8vmw_B : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:GROUND STATE AT PH6.0 (K+ MES) WITH NA+ (Intron-encoded endonuclease I-PpoI)
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.60, R-factor=0.185)
structural superfamily	His-Me finger endonucleases;
multimeric complexes	1a74_AB 1cyq_AB 1cz0_AB 1ipp_AB 2o6m_AB
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vmw_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK

Estimated binding specificities ?

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# IC=8.420 IC/col=0.936 n_of_columns=9

specificity:

A |  90  65   0  55   0  96   0  16   0
C |   1  15   5  11   0   0   0  60  96
G |   5   6  80  30  96   0  96   5   0
T |   0  10  11   0   0   0   0  15   0

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updated Fri Sep 13 14:26:14 2024