8vn2_A : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:REACTION AT PH6.0 (K+ MES) WITH 500 UM MG2+ FOR 320S (Intron-encoded endonuclease I-PpoI)
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.63, R-factor=0.176)
structural superfamily	His-Me finger endonucleases;
multimeric complexes	1a74_AB 1cyq_AB 1cz0_AB 1ipp_AB 2o6m_AB
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vn2_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK

Estimated binding specificities ?

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# IC=9.411 IC/col=0.941 n_of_columns=10

specificity:

A |  96  64   1  68   0  96   0   9   0  70
C |   0   9   9   1   0   0   0  59  96   4
G |   0  10  82  27  96   0  96  10   0   9
T |   0  13   4   0   0   0   0  18   0  13

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updated Fri Sep 13 14:26:56 2024