8vnp_B : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX AT PH6.0 (K+ MES) WITH 0.2 M SODIUM MALONATE (Intron-encoded endonuclease I-PpoI)
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.79, R-factor=0.172)
structural superfamily	His-Me finger endonucleases;
multimeric complexes	1a74_AB 1cyq_AB 1cz0_AB 1ipp_AB 2o6m_AB
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vnp_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK

Estimated binding specificities ?

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# IC=9.680 IC/col=0.968 n_of_columns=10

specificity:

A |   0   0  19   0   0   0   0   9   9   1
C |   0   0   4  96   0  96  30  74  11   4
G |   0  96  62   0   0   0   9   9   9   0
T |  96   0  11   0  96   0  57   4  67  91

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updated Fri Sep 13 14:28:43 2024