interface graph thumbnail
legend  pdf

structure nameHOMING ENDONUCLEASE H98A I-PPOI-DNA COMPLEX AT PH6.0 (K+ MES) WITH 1 MM MN2+ FOR 1800S
(Intron-encoded endonuclease I-PpoI)
referenceChang et al. 'To ? ? ?
sourcePhysarum polycephalum
experimentX-ray (resolution=1.93, R-factor=0.194)
structural superfamilyHis-Me finger endonucleases;
multimeric complexes1a74_AB 1cyq_AB 1cz0_AB 1ipp_AB 2o6m_AB
reference complex8vms_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureANRQKTVRLK

Estimated binding specificities ?

readout + contactlogo
# IC=8.910 IC/col=0.891 n_of_columns=10 specificity:   
A |   6   0  24   0   0   0   9   6   9   0
C |   6   0  24  96   0  96   6  75   6   6
G |   6  96  24   0   0   0   6   9   6   1
T |  78   0  24   0  96   0  75   6  75  89
scan!

home
updated Fri Sep 13 14:28:50 2024