8vnr_A : 3D-footprint complex

structure name	HOMING ENDONUCLEASE H98A I-PPOI-DNA COMPLEX AT PH6.0 (K+ MES) WITH 1 MM MN2+ FOR 600S AND THEN 100 MM IMIDAZOLE FOR 15 HRS (Intron-encoded endonuclease I-PpoI)
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.98, R-factor=0.189)
structural superfamily	His-Me finger endonucleases;
multimeric complexes	1a74_AB 1cyq_AB 1cz0_AB 1ipp_AB 2o6m_AB
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vnr_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctasalchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK

Estimated binding specificities ?

readout + contact

# IC=9.974 IC/col=0.997 n_of_columns=10

specificity:

A |  11   0  28   0   0   0   0   5  13   0
C |   5   0   5  96   0  96   5  84   5   0
G |  13  96  58   0   0   0   0   5  11   0
T |  67   0   5   0  96   0  91   2  67  96

scan!

home
updated Fri Sep 13 14:28:57 2024