6vyu_A
citing 3d-footprint
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interface matrix
atomic interactions
interface residue numbers
structure name
ESCHERICHIA COLI TRANSCRIPTION-TRANSLATION COMPLEX C2 (TTC-C2) CONTAINING A 27 NT LONG MRNA SPACER
experiment
NMR
structural superfamily
beta and beta-prime subunits of DNA dependent RNA-polymerase;
sequence family
RNA polymerase Rpb2, domain 6
;
RNA polymerase Rpb2, domain 7
;
RNA polymerase beta subunit external
;
RNA polymerase Rpb2, domain 3
;
RNA polymerase Rpb2, domain 2
;
multimeric complexes
3iyd_ACDFGH
5nss_GJKMN
6n4c_ABCDF
6oul_IJLR
6psq_ILM
6psr_JLM
6pss_ILM
6pst_ILM
6psu_IJLM
6psv_IJLM
6psw_IJLM
6vyq_ABE
6vyr_ABE
6vys_ABE
6vyt_ABE
6vyu_ABE
6vyw_ABE
6vyx_ABE
6vyy_ABE
6vyz_ABE
6vz2_ABE
6vz5_ABE
6vzj_AE
6x6t_ABE
6x7f_ABE
6x7k_ABE
6x9q_ABE
6xas_BIJ
6xdq_ABE
6xdr_ABE
6xgf_ABE
6xii_ABE
6xij_ABE
6ztj_CDF
6ztl_CDF
6ztm_CD
6ztn_CDF
6zto_CD
6ztp_CDJ
6zu1_CD
7bef_ACDFG
7beg_BCDFG
7c17_ACDFGH
7c97_CDFK
7chw_CDFK
7dy6_CDFK
7khc_ABF
7mkd_IJLR
7mkj_IJLR
7qv9_Mb
7qv9_ce
7vwy_CDFG
7vwz_CDFGI
7w5x_ACDFK
7w5y_ACDFK
8ftd_IJLR
8igr_ACDGIJL
8to1_LM
8to6_IJLM
8to8_LM
8toe_IJ
8toe_LM
8tom_IJ
8tom_LM
8u3b_ACDFGH
8upo_AE
8upr_AE
8uql_ABE
8uqm_ABE
8uqp_AE
8ur0_AE
8urh_AE
8uri_AE
8urx_AE
8ury_AE
8y6u_CDFHIJ
reference complex
8y6u_I
links to other resources
NAKB
PDIdb
DNAproDB
protein sequence
> 6vyu_A interface=150,174,182,198,200,541, vysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiqsysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeqevymgeiplmtdngtfvingtervivsqlhRspgvffdsdkgkthssgkvlynaRiipyrgsWldfefdpkdnlfvriDrRrklpatiilralnytteqildlffekvifeirdnklqmelvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakdyidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrlsalveiyrmmrpgepptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgilskddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerlslgdldtlmpqdminakpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggltreRagfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvtdeihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqvvsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakrggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepvergdvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvsrdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgsdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdlseelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqydelkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskinpiedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevaklrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellklgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplggkaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmpesfnvllkeirslginielede
3D-footprint cannot reliably estimate the specificity of 'beta and beta-prime subunits of DNA dependent RNA-polymerases', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.
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updated Tue Dec 17 07:41:10 2024