6vyy_A
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legend
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interface graph
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interface matrix
atomic interactions
interface residue numbers
structure name
ESCHERICHIA COLI TRANSCRIPTION-TRANSLATION COMPLEX C5 (TTC-C5) CONTAINING MRNA WITH A 21 NT LONG SPACER, NUSG, AND FMET-TRNAS AT E- SITE AND P-SITE
experiment
NMR
structural superfamily
beta and beta-prime subunits of DNA dependent RNA-polymerase;
sequence family
RNA polymerase Rpb2, domain 6
;
RNA polymerase Rpb2, domain 7
;
RNA polymerase beta subunit external
;
RNA polymerase Rpb2, domain 3
;
RNA polymerase Rpb2, domain 2
;
multimeric complexes
3iyd_ACDFGH
5nss_GJKMN
6jnx_CDFPQ
6ldi_CDFGH
6n4c_ABCDF
6p18_CDFPQ
6pb4_CDFGH
6pb5_CFGH
6pb6_CDFGH
6vu3_ABE
6vyq_ABE
6vyr_ABE
6vys_ABE
6vyt_ABE
6vyu_ABE
6vyw_ABE
6vyx_ABE
6vyy_ABE
6vyz_ABE
6vz2_ABE
6vz3_ABE
6vz5_ABE
6vz7_ABE
6vzj_AE
6x6t_ABE
6x7f_ABE
6x7k_ABE
6x9q_ABE
6xas_BIJ
6xdq_ABE
6xdr_ABE
6xgf_ABE
6xh7_CDFGH
6xh8_CDFGH
6xii_ABE
6xij_ABE
6xl5_CDFGH
6xl9_CDFGH
6xlj_CDFGH
7c17_ACDFGH
7qv9_Mb
7qv9_ce
7vwz_CDFGI
7w5x_ACDFK
8igr_ACDGIJL
8igs_IJL
reference complex
8jo2_H
links to other resources
NAKB
PDIdb
DNAproDB
protein sequence
> 6vyy_A interface=150,174,182,198,200,541, vysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiqsysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeqevymgeiplmtdngtfvingtervivsqlhRspgvffdsdkgkthssgkvlynaRiipyrgsWldfefdpkdnlfvriDrRrklpatiilralnytteqildlffekvifeirdnklqmelvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakdyidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrlsalveiyrmmrpgepptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgilskddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerlslgdldtlmpqdminakpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggltreRagfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvtdeihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqvvsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakrggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepvergdvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvsrdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgsdvkdsslrvpngvsgtvidvqvftrdgveddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskinpiedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevaklrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellklgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplggkaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmpesfnvllkeirslginielede
3D-footprint cannot reliably estimate the specificity of 'beta and beta-prime subunits of DNA dependent RNA-polymerases', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.
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updated Mon Dec 18 18:45:11 2023