6vz7_A : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'beta and beta-prime subunits of DNA dependent RNA-polymerases', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.

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updated Fri Jan 9 10:55:31 2026

structure name	ESCHERICHIA COLI TRANSCRIPTION-TRANSLATION COMPLEX C1 (TTC-C1) CONTAINING A 27 NT LONG MRNA SPACER, NUSG, AND FMET-TRNAS AT P-SITE AND E-SITE
experiment	NMR
structural superfamily	beta and beta-prime subunits of DNA dependent RNA-polymerase;
sequence family	RNA polymerase Rpb2, domain 6; RNA polymerase Rpb2, domain 7; RNA polymerase beta subunit external; RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 2;
multimeric complexes	1lb2_ABE 3iyd_ACDFGH 3n4m_ABC 3n97_ABC 5ciz_AB 5nss_GJKMN 6n4c_ABCDF 6oul_IJLR 6psq_ILM 6psr_JLM 6pss_ILM 6pst_ILM 6psu_IJLM 6psv_IJLM 6psw_IJLM 6vu3_ABE 6vyq_ABE 6vyr_ABE 6vys_ABE 6vyt_ABE 6vyu_ABE 6vyw_ABE 6vyx_ABE 6vyy_ABE 6vyz_ABE 6vz2_ABE 6vz3_ABE 6vz5_ABE 6vz7_ABE 6vzj_AE 6x6t_ABE 6x7f_ABE 6x7k_ABE 6x9q_ABE 6xas_BIJ 6xdq_ABE 6xdr_ABE 6xgf_ABE 6xii_ABE 6xij_ABE 6ztj_CDF 6ztl_CDF 6ztm_CD 6ztn_CDF 6zto_CD 6ztp_CDJ 6zu1_CD 7bef_ACDFG 7beg_BCDFG 7c17_ACDFGH 7c97_CDFK 7chw_CDFK 7dy6_CDFK 7khc_ABF 7mkd_IJLR 7mkj_IJLR 7qv9_Mb 7qv9_ce 7vwy_CDFG 7vwz_CDFGI 7w5x_ACDFK 7w5y_ACDFK 8ftd_IJLR 8igr_ACDGIJL 8to1_LM 8to6_IJLM 8to8_LM 8toe_IJ 8toe_LM 8tom_IJ 8tom_LM 8u3b_ACDFGH 8upo_AE 8upr_AE 8uql_ABE 8uqm_ABE 8uqp_AE 8ur0_AE 8urh_AE 8uri_AE 8urx_AE 8ury_AE 8y6u_CDFHIJ
redundant complexes	3iyd 5nss 6jnx 6ldi 6n4c 6p18 6pb4 6pb5 6pb6 6vu3 6vyq 6vyr 6vys 6vyt 6vyu 6vyw 6vyx 6vyy 6vyz 6vz2 6vz3 6vz5 6vzj 6x6t 6x7f 6x7k 6x9q 6xas 6xdq 6xdr 6xgf 6xh7 6xh8 6xii 6xij 6xl5 6xl9 6xlj 7c17 7qv9 7vwz 7w5x
reference complex	8y6u_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6vz7_A interface=150,174,182,198,200,541, vysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiqsysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeqevymgeiplmtdngtfvingtervivsqlhRspgvffdsdkgkthssgkvlynaRiipyrgsWldfefdpkdnlfvriDrRrklpatiilralnytteqildlffekvifeirdnklqmelvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakdyidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrlsalveiyrmmrpgepptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgilskddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerlslgdldtlmpqdminakpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggltreRagfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvtdeihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqvvsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakrggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepvergdvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvsrdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgsdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdlseelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqydelkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskinpiedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevaklrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellklgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplggkaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmpesfnvllkeirslginielede