6vz7_A
citing 3d-footprint
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legend
pdf
interface graph
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interface matrix
atomic interactions
interface residue numbers
structure name
ESCHERICHIA COLI TRANSCRIPTION-TRANSLATION COMPLEX C1 (TTC-C1) CONTAINING A 27 NT LONG MRNA SPACER, NUSG, AND FMET-TRNAS AT P-SITE AND E-SITE
experiment
NMR
structural superfamily
beta and beta-prime subunits of DNA dependent RNA-polymerase;
sequence family
RNA polymerase Rpb2, domain 6
;
RNA polymerase Rpb2, domain 7
;
RNA polymerase beta subunit external
;
RNA polymerase Rpb2, domain 3
;
RNA polymerase Rpb2, domain 2
;
multimeric complexes
3iyd_ACDFGH
5nss_GJKMN
6jnx_CDFPQ
6ldi_CDFGH
6n4c_ABCDF
6p18_CDFPQ
6pb4_CDFGH
6pb5_CFGH
6pb6_CDFGH
6vu3_ABE
6vyq_ABE
6vyr_ABE
6vys_ABE
6vyt_ABE
6vyu_ABE
6vyw_ABE
6vyx_ABE
6vyy_ABE
6vyz_ABE
6vz2_ABE
6vz3_ABE
6vz5_ABE
6vz7_ABE
6vzj_AE
6x6t_ABE
6x7f_ABE
6x7k_ABE
6x9q_ABE
6xas_BIJ
6xdq_ABE
6xdr_ABE
6xgf_ABE
6xh7_CDFGH
6xh8_CDFGH
6xii_ABE
6xij_ABE
6xl5_CDFGH
6xl9_CDFGH
6xlj_CDFGH
7c17_ACDFGH
7qv9_Mb
7qv9_ce
7vwz_CDFGI
7w5x_ACDFK
8g00_IJ
8igr_ACDGIJL
8igs_IJL
8jo2_CDFHI
8u3b_ACDFGH
8upo_AE
8upr_AE
8uql_ABE
8uqm_ABE
8uqp_AE
8ur0_AE
8urh_AE
8uri_AE
8urx_AE
8ury_AE
redundant complexes
3iyd
5nss
6jnx
6ldi
6n4c
6p18
6pb4
6pb5
6pb6
6vu3
6vyq
6vyr
6vys
6vyt
6vyu
6vyw
6vyx
6vyy
6vyz
6vz2
6vz3
6vz5
6vzj
6x6t
6x7f
6x7k
6x9q
6xas
6xdq
6xdr
6xgf
6xh7
6xh8
6xii
6xij
6xl5
6xl9
6xlj
7c17
7qv9
7vwz
7w5x
reference complex
8upo_A
links to other resources
NAKB
PDIdb
DNAproDB
protein sequence
> 6vz7_A interface=150,174,182,198,200,541, vysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiqsysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeqevymgeiplmtdngtfvingtervivsqlhRspgvffdsdkgkthssgkvlynaRiipyrgsWldfefdpkdnlfvriDrRrklpatiilralnytteqildlffekvifeirdnklqmelvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakdyidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrlsalveiyrmmrpgepptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgilskddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerlslgdldtlmpqdminakpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggltreRagfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvtdeihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqvvsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakrggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepvergdvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvsrdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgsdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdlseelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqydelkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskinpiedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevaklrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellklgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplggkaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmpesfnvllkeirslginielede
3D-footprint cannot reliably estimate the specificity of 'beta and beta-prime subunits of DNA dependent RNA-polymerases', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.
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updated Tue Dec 17 07:45:21 2024