6zto_C : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'beta and beta-prime subunits of DNA dependent RNA-polymerases', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.

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updated Mon Dec 18 19:33:07 2023

structure name	E. COLI 70S-RNAP EXPRESSOME COMPLEX IN UNCOUPLED STATE 1
experiment	NMR
structural superfamily	beta and beta-prime subunits of DNA dependent RNA-polymerase;Translation proteins SH3-like domain;Nucleic acid-binding proteins;Ribosomal protein S3 C-terminal domain;Prokaryotic type KH domain KH-domain type II;
sequence family	RNA polymerase Rpb2, domain 6; Ribosomal Proteins L2, Cterminal dom; Ribosomal protein S3, Cterminal doma; RNA polymerase Rpb2, domain 7; Ribosomal Proteins L2, RNA binding do; RNA polymerase beta subunit external; RNA polymerase Rpb2, domain 3; Ribosomal protein S3, Nterminal doma; KH domain; RNA polymerase Rpb2, domain 2;
multimeric complexes	3iyd_ACDFGH 5nss_GJKMN 6n4c_ABCDF 6oul_IJLR 6psq_ILM 6psr_JLM 6pss_ILM 6pst_ILM 6psu_IJLM 6psv_IJLM 6psw_IJLM 6vyq_ABE 6vyr_ABE 6vys_ABE 6vyt_ABE 6vyu_ABE 6vyw_ABE 6vyx_ABE 6vyy_ABE 6vyz_ABE 6vz2_ABE 6vz5_ABE 6vzj_AE 6x6t_ABE 6x7f_ABE 6x7k_ABE 6x9q_ABE 6xas_BIJ 6xdq_ABE 6xdr_ABE 6xgf_ABE 6xii_ABE 6xij_ABE 6ztj_CDF 6ztl_CDF 6ztm_CD 6ztn_CDF 6zto_CD 6ztp_CDJ 6zu1_CD 7bef_ACDFG 7beg_BCDFG 7c17_ACDFGH 7c97_CDFK 7chw_CDFK 7dy6_CDFK 7khc_ABF 7mkd_IJLR 7mkj_IJLR 7qv9_Mb 7qv9_ce 7vwy_CDFG 7vwz_CDFGI 7w5x_ACDFK 7w5y_ACDFK 8igr_ACDGIJL
reference complex	7c97_K
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6zto_C interface=632,664,680,681,852,875,926,927,932,1019,1023,1028, gqkvhpngirlgivkpwnstwfantkefadnldsdfkvrqyltkelakasvsrivierpaksirvtihtarpgivigkkgedveklrkvvadiagvpaqiniaevrkpeldaklvadsitsqlerrvmfrramkravqnamrlgakgikvevsgrlggaeiartewyregrvplhtlradidyntseahttygvigvkvwifkgeilggavvkckptspgrrhvvkvvnpelhkgkpfaplleknsksggrnnngrittrhiggghkqayrivdfkrnkdgipavverleydpnrsanialvlykdgerryilapkglkagdqiqsgvdaaikpgntlpmrnipvgstvhnvemkpgkggqlarsagtyvqivardgayvtlrlrsgemrkveadcratlgevgnaehmlrvlgkagaarwrgvrptvrgtamnpvdhphgggegrnfgkhpvtpwgvqtkgkktrsnkrtdkfivrrrskmvysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiqsysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeqevymgeiplmtdngtfvingtervivsqlhRspgvffdsdkgkthssgkvlynariipyrgsWldfefdpkdnlfvriDRrrklpatiilralnytteqildlffekvifeirdnklqmelvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakdyidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrlsalveiyrmmRpgepptreaaeslfenlffsedRydlsavgrmkfnrsllreeiegsgilskddiidvmkklidirngkgevddIDhlgnRrirsvgemaenqfrvglvrveravkerlslgdldtlmpqdminakpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggLtreRagfeVrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvtdeihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqvvsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakrggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepvergdvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvsrdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdlseelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqydelkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskinpiedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevaklrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellklgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplggkaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmpesfnvllkeirslginielede