interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CORE PARTICLE
(HISTONE H2A.A)
referenceKajimura et al. 'Nucleic 33 3424 2005
sourceHOMO SAPIENS
experimentX-ray (resolution=2.50, R-factor=?)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
redundant complexes3av1 3afa 3a6n 3av2 3an2 2f8n
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  KT--------RA               +---1kx5_G    
                             ! 
  --KT------RT   L   +-------6    +2f8n_G    
                     !       !  +-3 
  ----------RT       !       +--4 +1id3_C    
                     !          ! 
  ----------RA       !          +1f66_G    
                     !  
  ------IT----     -10      +-------3av1_D    
                     !    +-7 
  ------PT----       !    ! !      +1id3_F    
                     !    ! +------5 
  ----------RC       !  +-8        +1kx5_B    
                     !  ! ! 
  ----------RC       !  ! !       +1id3_E    
                     +--9 +-------1 
  ------LT--RC          !         +1kx5_E    
                        ! 
  ----------KG          !        +1jfi_A    
                        +--------2 
  ----RAAANA--                   +1jfi_B    
                   

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updated Mon Dec 16 19:25:38 2024