Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CONTAINING THE H3.1 E97K MUTANT
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes8ybk_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  LT----RC------                +-----------------------------3kwq_E    
                             +-16  
  ------RG------             !  +-----------------------------6iy2_A    
                             !  
  ------RT------             !                             +7zs9_e    
                             !              +--------------1 
  ------RT------             !              !              +8grq_A    
                             !        +----10  
  ------RG------             !        !     !              +7ccr_A    
                             !        !     +--------------3 
  LC----RT------             !        !                    +8hr1_E    
                          +-17        !  
  LA----RG------          !  !     +-14          +---------7unc_a    
                          !  !     !  !       +--7 
  ------RA------          !  !     !  !       !  !         +1zla_C    
                          !  !     !  !  +----9  +---------4 
  ------RG------          !  !     !  !  !    !            +8ox0_C    
                          !  !     !  !  !    ! 
  ------RA----RA          !  !     !  +-12    +------------6a5l_g    
                          !  !     !     !  
  QC----RG------          !  !     !     !       +---------7y7i_E    
                          !  +----15     +-------8 
  --------RA----          !        !             +---------6g0l_D    
                       +-18        !  
  ----------KG--       !  !        !                      +7nkx_f    
                       !  !        !        +-------------5 
  ------RG------       !  !        !        !             +8jla_C    
                       !  !        !   +---11  
  ------RT------       !  !        !   !    !              +7kbd_C    
                       !  !        !   !    +--------------2 
  ------RG------     -19  !        +--13                   +5x0y_G    
                       !  !            !  
  ------RC------       !  !            !               +---7xyf_B    
                       !  !            +---------------6 
  ----KT--------   L   !  !                            +---7cvo_A    
                       !  !  
  LT----RC------       !  +-----------------------------4xzq_E    
                       !  
  --IT----------       +-----------------------------3wkj_D    
                     

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updated Wed Dec 18 20:07:27 2024