8ybk_E : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CONTAINING THE H3.1 E97K MUTANT
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	8ybk_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ybk_E interface=27, stellirklpfqrlvreiaqdfktdlRfqssavmalqeackaylvglfedtnlcaihakrvtimpkdiqlarrirgera

  
  ------RG--                        +-----------------------------6iy2_A    
                                  +-3 
  LT----RC--                    +-4 +-----------------------------3kwq_E    
                                ! ! 
  ------RG--                  +-5 +-----------------------------7ccr_A    
                              ! ! 
  ------RT--                +-6 +-----------------------------7zs9_e    
                            ! ! 
  LT----RC--              +-7 +-----------------------------4xzq_E    
                          ! ! 
  LA----RG--            +-8 +-----------------------------7unc_a    
                        ! ! 
  QC----RG--          +-9 +-----------------------------7y7i_E    
                      ! ! 
  --IT------       +-10 +-----------------------------3wkj_D    
                   !  !  
  --------KG       !  +-----------------------------7nkx_f    
                 -11  
  ------RC--       !                          +--7xyf_B    
                   !            +-------------1 
  ------RT--       +------------2             +--7kbd_C    
                                ! 
  ----KT----   L                +----------------7cvo_A

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updated Sat Sep 14 12:44:45 2024