Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCOMPOSITE MODEL OF A CHD1-NUCLEOSOME COMPLEX IN THE NUCLEOTIDE-FREE STATE DERIVED FROM 2.3A AND 2.7A CRYO-EM MAPS
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes7swy_ABCDEFGH 7tn2_ABCDEFGHW
redundant complexes7swy_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RG----------------                                       +7k60_H    
                                                         +-1 
  RG----------------                                     ! +7k5x_H    
                                            +------------5 
  RG----------------                        !            ! +6y5d_H    
                                         +-10            +-2 
  RT----------------                     !  !              +7v9c_H    
                                         !  !  
  --------------RT--                     !  +------------7m1x_C    
                                 +------11  
  --------------RA--             !       !              +6t7a_C    
                                 !       !    +---------3 
  --------------RT--             !       !    !         +7lyb_G    
                                 !       +----9 
  --------------RC--             !            !    +----6qld_f    
                                 !            !    ! 
  --------------RA--          +-13            +----7     +7xsx_a    
                              !  !                 !   +-4 
  --LT--------------          !  !                 +---6 +7ywx_E    
                              !  !                     ! 
  --LA----------RG--          !  !                     +7unc_a    
                           +-14  !  
  --------------RT--       !  !  !                +-----6m4d_C    
                           !  !  +----------------8 
  ----RA--ET--RT----       !  !                   +-----4ne1_p    
                         -15  !  
  --LT--------------       !  +------------------------4z5t_A    
                           !  
  ------RAAANA------       !       +-----------------1jfi_B    
                           +------12  
  ----------------RA               +-----------------7n8n_A    
                         

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updated Sat Sep 14 04:42:42 2024