3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF HUMAN KINETOCHORE PROTEIN CENP-N WITH THE CENTROMERIC NUCLEOSOME CONTAINING CENP-A
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes1eqz_ABCDEFGH 1u35_ABCDEFGH 2cv5_ABCDEFGH 3a6n_ABCDEFGH 3afa_ABCDEFGH 3an2_ABCDEFGH 3av1_ABCDEFGH 3av2_ABCDEFGH 3ayw_ABCDEFGH 3aze_ABCDEFGH 3azf_ABCDEFGH 3azg_ABCDEFGH 3azh_ABCDEFGH 3azi_ABCDEFGH 3azj_ABCDEFGH 3azk_ABCDEFGH 3azl_ABCDEFGH 3azm_ABCDEFGH 3azn_ABCDEFGH 3kwq_ABCDEFGH 3w96_ABCDEFGH 3w97_ABCDEFGH 3w98_ABCDEFGH 3w99_ABCDEFGH 3wa9_ABCDEFGH 3waa_ABCDEFGH 3wtp_ABCDEFGH 3x1s_ABCDEFGH 3x1u_ABCDEFGH 4xzq_ABCDEFGH 4ym5_ABCDEFGH 4ym6_ABCDEFGH 4ys3_ABCDEFGH 4z5t_ABCDEFGH 4z66_ABCDEFGH 5av5_ABCDEFGH 5av6_ABCDEFGH 5av8_ABCDEFGH 5av9_ABCDEFGH 5avb_ABCDEFGH 5avc_ABCDEFGH 5ay8_ABCDEFGH 5b0y_ABCDEFGH 5b0z_ABCDEFGH 5b1l_ABCDEFGH 5b1m_ABCDEFGH 5b24_ABCDEFGH 5b2i_ABCDEFGH 5b2j_ABCDEFGH 5b31_ABCDEFGH 5b32_ABCDEFGH 5b33_ABCDEFGH 5b40_ABCDEFGH 5cpi_ABCDEFGH 5cpj_ABCDEFGH 5cpk_ABCDEFGH 5gse_ABCDEFGHKLMNOP 5gt0_ABCDEFGH 5gtc_ABCDEFGH 5gxq_ABCDEFGH 5jrg_ABCDEFGH 5kgf_ABCDEFGH 5x7x_ABCDEFGH 5xf3_ABCDEFGH 5xf4_ABCDEFGH 5xf5_ABCDEFGH 5xm0_ABCDEFGH 5xm1_ABCDEFGH 5y0c_ABCDEFGH 5y0d_ABCDEFGH 5z23_ABCDEFGH 5z30_ABCDEFGH 5zbx_ABCDEFGH 6a5l_AB 6a5l_Eabcdef 6a5l_gh 6a5o_ABEabcdefgh 6a5p_ABEabcdefgh 6a5r_ABEabcdef 6a5t_ABEabcdef 6a5u_ABEbc 6a5u_adef 6a5u_gh 6buz_ABCDEFGHN 6c0w_ABCDEFGHK 6e0c_ABCDEFGH 6e0p_ABCDEFGH 6hkt_0123ABCDEFGHKLMNOPQRUVWXYZabcdefghklmnopqruvwxyz 6inq_ABEbcdef 6inq_gh 6ipu_ABCDEFGH 6iq4_ABCDEFGH 6ir9_ABEWabcdef 6j4w_ABEWabcdefgh 6j4x_ABEWabcdef 6j4y_ABEWabcdef 6j4z_AB 6j4z_EWabcdef 6j4z_gh 6j50_BEbc 6j50_adef 6j50_gh 6j51_ABEWabcdef 6j51_gh 6jm9_ABCDEFGH 6jma_ABCDEFGH 6jou_ABCDEFGH 6jr0_ABCDEFGH 6jr1_ABCDEFGH 6jxd_ABCDEFGH 6k1i_ABCDEFGH 6k1j_ABCDEFGH 6k1k_ABCDEFGH 6ke9_ABCDEFGH 6kvd_ABCDEFGH 6kxv_ABCDEFGH 6l49_ABCDEFGHKLMNOPQRSTUVWXYZ 6l4a_ABCDEFGHKLMNOPQRSTUVWXYZ 6l9h_ABCDEFGH 6l9z_ABCDEFGHKLMNOPQRS 6la2_ACDEFGHKLMNQ 6la2_TUVWXabefgijkl 6la8_ABCDEFGHKLMNOPQRS 6la9_ABCDEFGHKLMNOPQRST 6lab_ABCDEFGH 6lab_KLMNOPQR 6lab_UV 6le9_ABCDEFGH 6ler_ABCDEFGH 6ler_KLMNOPQR 6m3v_ABCDEFGHKLMNOPQR 6m44_ABCDEFGHKLMNOPQR 6m4d_ABCDEFGH 6m4g_ABCDEFGH 6m4h_ABCDEFGH 6muo_ABCDEFGHM 6mup_ABCDEFGHMN 6o1d_ABCDEFGH 6r0c_ABCDEFGH 6r8y_ABCDEFGHL 6r8z_ABCDEFGHL 6r90_ABCDEFGHL 6r91_ABCDEFGHL 6r92_ABCDEFGHL 6r93_ABCDEFGH 6r94_ABCDEFGH 6se0_ABCDEFGH 6se6_ABCDEFGH 6see_ABCDEFGH 6sef_ABCDEFGH 6seg_ABCDEFGH 6t79_ABCDEFGH 6t7a_ABCDEFGHK 6t7b_ABCDEFGHK 6t7c_ABCDEFGHKL 6t7d_ABCDEFGHK 6t90_ABCDEFGHKL 6t93_ABCDEFGH 6upk_ABCDEFGH 6upl_ABCDEFGHKL 6usj_ABCDEFGH 6usj_KLMNOPQR 6usj_UV 6v2k_ABCDEFGH 6x59_ABCDEFGH 6x5a_ABCDEFGH 6xjd_ABCDEFGH 6y5d_ABCDEFGH 6y5d_KMNOPQRST 6yov_ABCDEFGHKL 6z6p_ABCDEFGHM 6z6p_KN 7a08_bcdefghi 7bwd_ABCDEFGHLM 7bxt_ABCDEFGHMN 7by0_ABCDEFGH 7c0m_ABCDEFGHKk 7c0m_abcdefgh 7ccq_ABCDEFGH 7ccr_ABCDEFGH 7ccr_KV 7ccr_LMNOPQRS 7cow_ABCDEFGHKLMNOPQRST 7d1z_ABCDEFGH 7d20_ABCDEFGH 7dbh_ABCDEFGH 7dbp_ABCDEFGHK 7e8d_ABCDEFGHK 7ea8_ABCDEFGH 7jo9_ABCDEFGH 7joa_ABCDEFGH 7jzv_NOPQnopq 7k5x_ABCDEFGHU 7k5y_ABCDEFGHU 7k60_ABCDEFGHU 7k61_ABCDEFGH 7k63_ABCDEFGHU 7lya_ABCDEFGH 7lyb_ABCDEFGH 7lyc_ABCDEFGH 7nl0_ABCDEFGH 7pet_ABCDEFGHKLMNOPQRabcdefghklmnopqrsu 7peu_ABCDEFGHKLMNOPQRabcdefghu 7pev_ABCDEFGHKLMNOPQR 7pew_ABCDEFGH 7pex_abcdefghu 7pey_KLMNOPQR 7pez_eklmnopqs 7pf0_ABCDEFGHKLMNOPQRUabcdefghu 7pf2_ABCDEFGHKLMNOPQRU 7pf3_klmnopqrs 7pf4_KLMNOPQR 7pf5_abcdefghu 7pf6_ABCDEFGHU 7pfa_ABCDEFGHKLMNOPQRUabcdefghu 7pfc_ABCDEFGHKLMNOPQRU 7pfd_ABCDEFGHU 7pfe_abcdefghu 7pff_KLMNOPQR 7pft_ABCDEFGHKLMNOPQRSUabcdefghu 7pfu_ABCDEFGHKLMNOPQRSU 7pfv_ABCDEFGHU 7pfw_abcdefghu 7pfx_KLMNOPQRS 7pii_ABCDEFGH 7r5r_ABCDEFGH 7scy_ABCDEFGHK 7scz_ABCDEFGHK 7tan_ABCDEFGH 7u0j_ABCDEFGH 7u46_ABCDEFGHK 7u47_ABCDEFGHK 7u47_LMNOPQRSV 7u4d_ABCDEFGHK 7u4d_LMNOPQRS 7u50_ABCDEFGHK 7u51_ABCDEFGH 7u52_ABCDEFGH 7u53_ABCDEFGH 7v90_ABCDEFGH 7v96_ABCDEFGHKLMNOPQR 7v9c_ABCDEFGHKLMNOPQR 7v9j_ABCDEFGHKLMNOPQRSTUVWXYZ 7v9k_ABCDEFGHKLMNOPQRSTUVWXYZabcdefgh 7v9s_ABCDEFGHKLMNOPQRSTUVWXYZ 7va4_ABCDEFGHKLMNOPQRSTUVWXYZabcdefgh 7vbm_ABCDEFGH 7vz4_ABCDEFGH 7w9v_ABCDEFGH 7wbw_Mg 7xcr_ABCDEFGH 7xct_ABCDEFGHL 7xd0_ABCDEFGHKL 7xd1_ABCDEFGH 7xse_ABEWabcdef 7xse_hu 7xsx_ABEWabcdejk 7xsx_hu 7xsz_ABEWabcdefgh 7xt7_ABEWabcdefjk 7xt7_hu 7xtd_ABEabcdejk 7xtd_fh 7xvl_ABCDEFGH 7xvl_KLMNOPQR 7xvl_UVWXYZab 7xvl_efghijkl 7xvm_ABCDEFGH 7xx5_ABCDEFGH 7xx5_KLMNOPQR 7xx6_AXY 7xx6_BCDEFGHo 7xx6_KLMNOPQR 7xx6_UVWZabp 7xx6_efghijkl 7xzx_ABCDEFGHKLMN 7xzy_ABCDEFGH 7xzz_ABCDEFGHKLMN 7y00_ABCDEFGH 7y7i_ABCDEFGH 7yqk_ABCDEFGH 7ywx_ABCDEFGLNVW 8dk5_ABCDEFGH 8evg_ABCDEFGH 8g57_ABCDEFGH 8guk_ABCDEFGH 8hak_ABCDEFGH 8he5_Eh 8hr1_ABCDEFGH 8jbx_ABCDEFGH 8jh2_gh 8jhf_ABCDEFGH 8jhg_ABCDEFGH 8jl9_ABCDEFGH 8jla_ABCDEFGH 8jlb_ABCDEFGH 8jld_ABCDEFGH 8jnd_LNPQ 8jne_ABCDEFGH 8jne_KN 8jne_MQS 8kb5_ABCDEFGH 8ox0_ABCDEFGH 8pkj_ABCDEFGH 8smw_ABCDEFGH 8smx_ABCDEFGH 8smy_ABCDEFGH 8smz_ABCDEFGH 8sn0_ABCDEFGH 8sn1_ABCDEFGH 8sn2_ABCDEFGH 8sn6_ABCDEFGH 8sn7_ABCDEFGH 8sn9_ABCDEFGH 8sna_ABCDEFGH 8syp_ABCDEFGH 8txw_ABCDEFGH 8txx_ABCDEFGH 8u13_ABCDEFGH 8u14_ABCDEFGH 8upf_ABCDEFGH 8vfx_ABCDEFGH 8wg5_ABCDEFGH 8x7k_ABCDEFGH 8ybj_ABCDEFGH 8ybk_ABCDEFGH 8yti_ABCDEFGH 8yti_KLMNOPQR 8yti_UV
redundant complexes3ayw_D 3azg_D 3azi_H 3azl_H 3w96_D 3w98_H 3wa9_D 3wtp_D 4ym6_H 4ys3_H 5avb_H 5b2j_H 5b32_D 5b33_H 5xf3_H 5xf4_H 5y0d_H 6e0c_D 6j4y_d 6k1j_D 6k1k_H 6kvd_D 6l49_D 6l4a_D 6la8_R 6le9_D 6muo_D 6t93_H 7jo9_H 7joa_H 7k5y_D 7k61_H 7pf2_H 7pf6_H 7pfd_D 7pfe_d 7pfu_R 7tan_D 7u0j_H 7u50_H 7v90_D 7v9s_Z 7w9v_H 7xct_D 7xtd_d 7xx5_R 8evg_H 8evh_H 8h0w_h 8hak_D 8ham_H 8jl9_H 8jnd_Q 8jnf_P 8osj_D 8ott_D 8pki_D 8smy_D 8smz_H 8sn2_D 8sn8_H 8txw_D 8vg1_H 8yv8_H 1eqz 1u35 2cv5 3a6n 3afa 3an2 3av1 3av2 3aze 3azf 3azh 3azj 3azk 3azm 3azn 3kwq 3w97 3w99 3waa 3x1s 3x1u 4xzq 4ym5 4z5t 4z66 5av5 5av6 5av8 5av9 5avc 5ay8 5b0y 5b0z 5b1l 5b1m 5b24 5b2i 5b31 5b40 5cpi 5cpj 5cpk 5gse 5gt0 5gtc 5gxq 5jrg 5kgf 5x7x 5xf5 5xm0 5xm1 5y0c 5z23 5z30 5zbx 6a5l 6a5o 6a5p 6a5r 6a5t 6a5u 6buz 6e0p 6hkt 6inq 6ipu 6iq4 6ir9 6j4w 6j4x 6j4z 6j50 6j51 6jm9 6jma 6jou 6jr0 6jr1 6jxd 6k1i 6ke9 6kxv 6l9h 6l9z 6la2 6la9 6lab 6ler 6m3v 6m44 6m4d 6m4g 6m4h 6mup 6o1d 6r0c 6r8y 6r8z 6r90 6r91 6r92 6r93 6r94 6se0 6se6 6see 6sef 6seg 6t79 6t7a 6t7b 6t7c 6t7d 6t90 6upk 6upl 6usj 6v2k 6x59 6x5a 6xjd 6y5d 6yov 6z6p 7a08 7bwd 7bxt 7by0 7c0m 7ccq 7ccr 7cow 7d1z 7d20 7dbh 7dbp 7e8d 7ea8 7jzv 7k5x 7k60 7k63 7lya 7lyb 7lyc 7nl0 7pet 7peu 7pev 7pew 7pex 7pey 7pez 7pf0 7pf3 7pf4 7pf5 7pfa 7pfc 7pff 7pft 7pfv 7pfw 7pfx 7pii 7r5r 7scy 7scz 7u0g 7u0i 7u46 7u47 7u4d 7u51 7u52 7u53 7uv9 7v96 7v9c 7v9j 7v9k 7va4 7vbm 7vz4 7wbv 7wbw 7wbx 7xcr 7xd0 7xd1 7xse 7xsx 7xsz 7xt7 7xvl 7xvm 7xx6 7xzx 7xzy 7xzz 7y00 7y7i 7yqk 7ywx 8atf 8dk5 8evi 8evj 8g57 8gui 8guj 8guk 8h0v 8hag 8hah 8hai 8haj 8hal 8han 8he5 8hr1 8jbx 8jh2 8jh3 8jh4 8jhf 8jhg 8jla 8jlb 8jld 8jne 8kb5 8osk 8osl 8ots 8ox0 8ox1 8pkj 8rbx 8smw 8smx 8sn0 8sn1 8sn3 8sn4 8sn5 8sn6 8sn7 8sn9 8sna 8sps 8spu 8syp 8txv 8txx 8u13 8u14 8upf 8vfx 8vfy 8vfz 8vg0 8vg2 8wg5 8x7k 8xbt 8xbu 8ybj 8ybk 8yti
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  ----RA--       +--------------------------6g0l_D    
                 !  
  --RA----       !                           +1zla_C    
                 !            +--------------5 
  --RG----     -13  +---------9              +5x0y_G    
                 !  !         ! 
  --RG----       !  !         +---------------8jla_C    
                 !  !  
  --RA--RA       +-12                         +6a5l_g    
                    !   +---------------------1 
  --RG----          !   !                     +8txv_G    
                    !   !  
  --RT----          !   !                      +8u14_G    
                    +--11  +-------------------2 
  --RG----              !  !                   +8ox0_C    
                        !  !  
  --RC----              !  !               +---6qld_f    
                        +-10               ! 
  --RA----                 !          +----7     +7xsx_a    
                           !          !    !   +-3 
  LARG----                 !          !    +---4 +7unc_a    
                           +----------8        ! 
  --RT----                            !        +8grq_A    
                                      ! 
  LC------                            !       +8bvw_e    
                                      +-------6 
  LCRT----                                    +8hr1_E

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updated Sun Aug 3 10:59:28 2025