3lz0_F : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

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updated Thu Sep 12 17:37:06 2024

structure name	CRYSTAL STRUCTURE OF NUCLEOSOME CORE PARTICLE COMPOSED OF THE WIDOM 601 DNA SEQUENCE (ORIENTATION 1) (HISTONE H4)
reference	Vasudevan et al. J.Mol.Biol. 403 1 2010
source	XENOPUS LAEVIS
experiment	X-ray (resolution=2.50, R-factor=0.269)
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	1aoi_ABCDEFGH 1eqz_ABCDEFGH 1f66_ABCDEFGH 1id3_ABCDEFGH 1kx3_ABCDEFGH 1kx4_ABCDEFGH 1kx5_ABCDEFGH 1m18_ABCDEFGH 1m19_ABCDEFGH 1m1a_ABCDEFGH 1p34_ABCDEFGH 1p3a_ABCDEFGH 1p3b_ABCDEFGH 1p3f_ABCDEFGH 1p3g_ABCDEFGH 1p3i_ABCDEFGH 1p3k_ABCDEFGH 1p3l_ABCDEFGH 1p3m_ABCDEFGH 1p3o_ABCDEFGH 1p3p_ABCDEFGH 1s32_ABCDEFGH 1u35_ABCDEFGH 1zbb_ABCDEFGHabcdefgh 1zla_ABCDEFGH 2cv5_ABCDEFGH 2f8n_ABDEFGHK 2fj7_ABCDEFGH 2nqb_ABCDEFGH 2nzd_ABCDEFGH 2pyo_ABCDEFGH 3a6n_ABCDEFGH 3afa_ABCDEFGH 3an2_ABCDEFGH 3av1_ABCDEFGH 3av2_ABCDEFGH 3ayw_ABCDEFGH 3aze_ABCDEFGH 3azf_ABCDEFGH 3azg_ABCDEFGH 3azh_ABCDEFGH 3azi_ABCDEFGH 3azj_ABCDEFGH 3azl_ABCDEFGH 3azm_ABCDEFGH 3azn_ABCDEFGH 3b6f_ABCDEFGH 3b6g_ABCDEFGH 3c1b_ABCDEFGH 3c1c_ABCDEFGH 3kuy_ABCDEFGH 3kxb_ABCDEFGH 3lel_ABCDEF 3lel_GH 3lel_KLMOPQR 3lja_ABCDEFGH 3lz0_ABCDEFGH 3lz1_ABCDEFGH 3mgp_ABCDEFGH 3mgq_ABCDEFGH 3mgr_ABCDEFGH 3mgs_ABCDEFGH 3mnn_ABCDEFGH 3mvd_ABCDEFGHKL 3o62_ABCDEFGH 3reh_ABCDEFGH 3rei_ABCDEFGH 3rej_ABCDEFGH 3rek_ABCDEFGH 3rel_ABCDEFGH 3tu4_ABCDEFGHKL 3ut9_ABCDEFGH 3uta_ABCDEFGH 3utb_ABCDEFGH 3w96_ABCDEFGH 3w97_ABCDEFGH 3w98_ABCDEFGH 3wa9_ABCDEFGH 3waa_ABCDEFGH 3wkj_ABCDEFGH 3wtp_ABCDEFGH 3x1s_ABCDEFGH 3x1t_ABCDEFGH 3x1u_ABCDEFGH 3x1v_ABCDEFGH 4j8u_ABCDEFGH 4j8v_ABCDEFGH 4j8w_ABCDEFGH 4j8x_ABCDEFGH 4jjn_ABCDEFGH 4kgc_ABCDEFGH 4kud_ABCDEFGH 4ld9_ABCDEFGH 4qlc_ABCDEFGHU 4r8p_ABCDEFGHL 4wu8_ABCDEFGH 4wu9_ABCDEFGH 4xuj_ABCDEFGH 4ym5_ABCDEFGH 4ym6_ABCDEFGH 4z5t_ABCDEFGH 4z66_ABCDEFGH 5av5_ABCDEFGH 5av6_ABCDEFGH 5av8_ABCDEFGH 5av9_ABCDEFGH 5avb_ABCDEFGH 5avc_ABCDEFGH 5ay8_ABCDEFGH 5b0y_ABCDEFGH 5b0z_ABCDEFGH 5b1l_ABCDEFGH 5b1m_ABCDEFGH 5b24_ABCDEFGH 5b2i_ABCDEFGH 5b2j_ABCDEFGH 5b31_ABCDEFGH 5b32_ABCDEFGH 5b33_ABCDEFGH 5b40_ABCDEFGH 5cp6_ABCDEFGH 5cpi_ABCDEFGH 5cpj_ABCDEFGH 5cpk_ABCDEFGH 5dnm_ABCDEFGH 5dnn_ABCDEFGH 5e5a_ABCDEFGH 5f99_ABCDEFGH 5gse_ABCDEFGHKLMNOP 5gsu_ABCDEFGH 5gt0_ABCDEFGH 5gt3_ABCDEFGH 5gtc_ABCDEFGH 5gxq_ABCDEFGH 5hq2_ABGH 5jrg_ABCDEFGH 5kgf_ABCDEFGH 5nl0_ABCDEFGHZ 5nl0_KLMN 5o9g_ABCDEFGHW 5omx_ABCDEFGH 5ong_ABCDEFGH 5onw_ABCDEFGH 5oxv_ABCDEFGHKLMNOPQR 5oy7_ABCDEFGHIJKLMNOPQRSTUVWXYZabcdef 5wcu_ABCDEFGHU 5wcu_KLMNOPQRV 5x0x_ABCDEFGHO 5x0y_ABCDEFGHO 5x7x_ABCDEFGH 5xf3_ABCDEFGH 5xf4_ABCDEFGH 5xf5_ABCDEFGH 5xf6_ABCDEFGH 5xm0_ABCDEFGH 5xm1_ABCDEFGH 5y0c_ABCDEFGH 5y0d_ABCDEFGH 5z23_ABCDEFGH 5z30_ABCDEFGH 5z3l_ABCDEFGHO 5z3o_ABCDEFGHO 5z3u_ABCDEFGHO 5z3v_ABCDEFGHO 5zbx_ABCDEFGH 6a5l_AB 6a5l_Eabcdef 6a5l_gh 6a5o_ABEabcdefgh 6a5p_ABEabcdefgh 6a5r_ABEabcdef 6a5t_ABEabcdef 6a5u_ABEbc 6a5u_adef 6a5u_gh 6buz_ABCDEFGHN 6c0w_ABCDEFGHK 6dzt_ABCDEFGH 6e0c_ABCDEFGH 6e0p_ABCDEFGH 6esf_ABCDEFGH 6esg_ABCDEFGH 6esh_ABCDEFGH 6esi_ABCDEFGH 6fq6_ABCDEFGH 6fq8_ABCDEFGH 6ftx_ABCDEFGHW 6g0l_ABCDEFGHMW 6hkt_0123ABCDEFGHKLMNOPQRUVWXYZabcdefghklmnopqruvwxyz 6inq_ABEbcdef 6inq_gh 6ipu_ABCDEFGH 6iq4_ABCDEFGH 6ir9_ABEWabcdef 6iro_ABCDEFGHL 6iy2_ABCDEFGHO 6iy3_ABCDEFGHO 6j4w_ABEWabcdefgh 6j4x_ABEWabcdef 6j4y_ABEWabcdef 6j4z_AB 6j4z_EWabcdef 6j4z_gh 6j50_BEbc 6j50_adef 6j50_gh 6j51_ABEWabcdef 6j51_gh 6j99_ABCDEFGH 6jm9_ABCDEFGH 6jma_ABCDEFGH 6jou_ABCDEFGH 6jr0_ABCDEFGH 6jr1_ABCDEFGH 6jxd_ABCDEFGH 6jyl_ABCDEFGHK 6k1i_ABCDEFGH 6k1j_ABCDEFGH 6k1k_ABCDEFGH 6k1p_ABCDEFGHK 6ke9_ABCDEFGH 6kvd_ABCDEFGH 6kxv_ABCDEFGH 6l49_ABCDEFGHKLMNOPQRSTUVWXYZ 6l4a_ABCDEFGHKLMNOPQRSTUVWXYZ 6l9h_ABCDEFGH 6l9z_ABCDEFGHKLMNOPQRS 6la2_ACDEFGHKLMNQ 6la2_TUVWXabefgijkl 6la8_ABCDEFGHKLMNOPQRS 6la9_ABCDEFGHKLMNOPQRST 6lab_ABCDEFGH 6lab_KLMNOPQR 6lab_UV 6le9_ABCDEFGH 6ler_ABCDEFGH 6ler_KLMNOPQR 6m3v_ABCDEFGHKLMNOPQR 6m44_ABCDEFGHKLMNOPQR 6m4d_ABCDEFGH 6m4g_ABCDEFGH 6m4h_ABCDEFGH 6muo_ABCDEFGHM 6mup_ABCDEFGHMN 6ne3_ABCDEFGHW 6nj9_ABCDEFGH 6nn6_ABCDEFGH 6nog_ABCDEFGH 6nqa_ABCDEFGH 6nzo_ABCDEFGHS 6o1d_ABCDEFGH 6o96_ABCDEFGH 6om3_ABCDEFGH 6om3_LMNOPQRST 6pa7_ABCDEFGHKP 6pwe_ABCDEFGH 6pwf_ABCDEFGHK 6pww_AGHIJKLMN 6pwx_AGHIJKLMN 6px1_ABCDEFGH 6px3_ABCDEFGHS 6r0c_ABCDEFGH 6r1t_ABCDEFGH 6r1u_ABCDEFGHK 6r25_ABCDEFGHM 6r8y_ABCDEFGHL 6r8z_ABCDEFGHL 6r90_ABCDEFGHL 6r91_ABCDEFGHL 6r92_ABCDEFGHL 6r93_ABCDEFGH 6r94_ABCDEFGH 6ryr_ABCDEFGHW 6ryu_ABCDEFGHVW 6s01_ABCDEFGHK 6se0_ABCDEFGH 6se6_ABCDEFGH 6see_ABCDEFGH 6sef_ABCDEFGH 6seg_ABCDEFGH 6t79_ABCDEFGH 6t7a_ABCDEFGHK 6t7b_ABCDEFGHK 6t7c_ABCDEFGHKL 6t7d_ABCDEFGHK 6t90_ABCDEFGHKL 6t93_ABCDEFGH 6tem_ABCDEFGH 6uph_ABCDEFGH 6upk_ABCDEFGH 6upl_ABCDEFGHKL 6usj_ABCDEFGH 6usj_KLMNOPQR 6usj_UV 6v2k_ABCDEFGH 6vyp_ABCDEFGHKLMN 6vyp_abcdefghklmn 6wkr_CEIJKMOQRS 6wz5_ABCDEFGH 6wz9_ABCDEFGH 6x0n_ABCDEFGHO 6x0n_PR 6x0n_abcdefgh 6x59_ABCDEFGH 6x5a_ABCDEFGH 6xjd_ABCDEFGH 6y5d_ABCDEFGH 6y5d_KMNOPQRST 6zhx_ABCDEFGH 6zhy_ABCDEF 7a08_bcdefghi 7at8_ADEFGHIJK 7bwd_ABCDEFGHLM 7bxt_ABCDEFGHMN 7by0_ABCDEFGH 7c0m_ABCDEFGHKk 7c0m_abcdefgh 7cow_ABCDEFGHKLMNOPQRST 7cro_BCDEFGHM 7crp_BCDEFGHM 7crq_BCDEFGHLM 7crr_BCDEFGHM 7d1z_ABCDEFGH 7d20_ABCDEFGH 7dbh_ABCDEFGH 7dbp_ABCDEFGHK 7e8d_ABCDEFGHK 7e8i_ABCDEFGH 7e9c_ABCDEFGH 7e9f_ABCDEFGH 7eg6_ABCDEFGH 7egp_AOPQRSTUV 7enn_ACDEFGHKL 7jo9_ABCDEFGH 7joa_ABCDEFGH 7jzv_NOPQnopq 7k5x_ABCDEFGHU 7k5y_ABCDEFGHU 7k60_ABCDEFGHU 7k61_ABCDEFGH 7k63_ABCDEFGHU 7k6p_ABCDEFGH 7k6q_ABCDEFGHK 7k78_ABCDEFGH 7k7g_ABCDEFGHM 7kbd_ABCDEFGH 7kbe_ABCDEFGH 7kbf_ABCDEFGHK 7lya_ABCDEFGH 7lyb_ABCDEFGH 7lyc_ABCDEFGH 7m1x_ABCDEFGH 7nkx_ABEWabcdef 7nky_ABEOQabcdef 7nky_Zh 7nl0_ABCDEFGH 7oh9_ABCDEFGHKL 7oha_ABCDEFGHKL 7ohb_ABCDEFGHK 7ohc_ABCDEFGH 7on1_abcdefgh 7otq_ABCDEFGHK 7pet_ABCDEFGHKLMNOPQRabcdefghklmnopqrsu 7peu_ABCDEFGHKLMNOPQRabcdefghu 7pev_ABCDEFGHKLMNOPQR 7pew_ABCDEFGH 7pex_abcdefghu 7pey_KLMNOPQR 7pez_eklmnopqs 7pf0_ABCDEFGHKLMNOPQRUabcdefghu 7pf2_ABCDEFGHKLMNOPQRU 7pf3_klmnopqrs 7pf4_KLMNOPQR 7pf5_abcdefghu 7pf6_ABCDEFGHU 7pfa_ABCDEFGHKLMNOPQRUabcdefghu 7pfc_ABCDEFGHKLMNOPQRU 7pfd_ABCDEFGHU 7pfe_abcdefghu 7pff_KLMNOPQR 7pft_ABCDEFGHKLMNOPQRSUabcdefghu 7pfu_ABCDEFGHKLMNOPQRSU 7pfv_ABCDEFGHU 7pfw_abcdefghu 7pfx_KLMNOPQRS 7pii_ABCDEFGH 7r5r_ABCDEFGH 7scy_ABCDEFGHK 7scz_ABCDEFGHK 7swy_ABCDEFGH 7tan_ABCDEFGH 7tn2_ABCDEFGHW 7u0j_ABCDEFGH 7u46_ABCDEFGHK 7u47_ABCDEFGHK 7u47_LMNOPQRSV 7u4d_ABCDEFGHK 7u4d_LMNOPQRS 7u50_ABCDEFGHK 7u51_ABCDEFGH 7u52_ABCDEFGH 7u53_ABCDEFGH 7unc_ABabcdefgh 7und_ABEZabdefgh 7v90_ABCDEFGH 7v96_ABCDEFGHKLMNOPQR 7v9c_ABCDEFGHKLMNOPQR 7v9j_ABCDEFGHKLMNOPQRSTUVWXYZ 7v9k_ABCDEFGHKLMNOPQRSTUVWXYZabcdefgh 7v9s_ABCDEFGHKLMNOPQRSTUVWXYZ 7va4_ABCDEFGHKLMNOPQRSTUVWXYZabcdefgh 7vbm_ABCDEFGH 7vdt_ABCDEFGHK 7vz4_ABCDEFGH 7w9v_ABCDEFGH 7wbw_Mg 7x3v_ABCDEFGH 7x3x_ABCDEFGH 7x57_ABCDEFGH 7x58_ABCDEFGH 7xcr_ABCDEFGH 7xct_ABCDEFGHL 7xfc_ABCDEFGH 7xfi_ABCDEFGH 7xfl_ABCDEFGH 7xfn_ABCDEFGH 7xnp_ABCDEFGH 7xpx_ABCDEFGH 7xse_ABEWabcdef 7xse_hu 7xsx_ABEWabcdejk 7xsx_hu 7xsz_ABEWabcdefgh 7xt7_ABEWabcdefjk 7xt7_hu 7xtd_ABEabcdejk 7xtd_fh 7xti_ABEWabhjk 7xti_ef 7xvl_ABCDEFGH 7xvl_KLMNOPQR 7xvl_UVWXYZab 7xvl_efghijkl 7xvm_ABCDEFGH 7xx5_ABCDEFGH 7xx5_KLMNOPQR 7xx6_AXY 7xx6_BCDEFGHo 7xx6_KLMNOPQR 7xx6_UVWZabp 7xx6_efghijkl 7xzx_ABCDEFGHKLMN 7xzy_ABCDEFGH 7xzz_ABCDEFGHKLMN 7y00_ABCDEFGH 7y5w_ABCDEFG 7y60_ABCDEFGH 7y61_ABCDEFGH 7y7i_ABCDEFGH 7yoz_ABCDEFGH 7ywx_ABCDEFGLNVW 7zs9_257AMOQRUWXabcdefgh 7zsa_7ABMOQRUWXabcdefgh 7zsb_7ABMOQRUWXabcdefgh 8cze_ABCDEFGH 8dk5_ABCDEFGH 8du4_ABCDEFGH 8ett_ABCDEF 8etv_ABCDEF 8eu2_KLMNOP 8eue_ABCDEFHK 8evg_ABCDEFGH 8g57_ABCDEFGH 8g86_ABCDEFGH 8guk_ABCDEFGH 8hak_ABCDEFGH 8he5_Eh 8j6s_ABCDEFGH 8j6t_ABCDEFGH 8jh2_gh 8jhf_ABCDEFGH 8jhg_ABCDEFGH 8jl9_ABCDEFGH 8jlb_ABCDEFGH 8jld_ABCDEFGH 8kb5_ABCDEFGH 8ooa_MNOPQR 8oos_GMNOPQR 8ox0_ABCDEFGH 8siy_CDEFGHIJ 8syp_ABCDEFGH 8t3t_ABCDEFGH 8t3w_ABCDEFGH 8t3y_ABCDEFGH 8t9f_ABCDEFGH 8t9h_ABCDEFGH 8thu_ABCDEFGH 8ux1_ABCDEFGH
reference complex	8xgc_4
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3lz0_F interface=21, niqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg