interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CORE PARTICLE CONTAINING H4K59Q MUTATION
(HISTONE H4)
referenceKurumizaka et al. Biochemistry 50 7822 2011
sourceHOMO SAPIENS
experimentX-ray (resolution=3.20, R-factor=?)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes3azk_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RA----                              +1zla_C    
                         +--------------4 
  --RG----           +---7              +5x0y_G    
                     !   ! 
  --RG----       +---9   +---------------8jla_C    
                 !   ! 
  --RT----       !   !                   +8u14_G    
                 !   +-------------------2 
  --RG----       !                       +8ox0_C    
               -11  
  --RA--RA       !                         +6a5l_g    
                 !  +----------------------1 
  --RG----       !  !                      +8txv_G    
                 !  !  
  --RT----       +-10            +---------8smw_G    
                    !  +---------5 
  ----RA--          !  !         +---------6g0l_D    
                    +--8 
  LC------             !                   +8bvw_e    
                       !    +--------------3 
  --RT----             +----6              +8grq_A    
                            ! 
  LCRT----                  +--------------8hr1_E    
               

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updated Sun Aug 3 06:42:45 2025