(updated: Mon Aug 4 03:21:27 2025)
In these diagrams sets of entries from the database are clustered to show their interface (left) and overall structural (right) similarity. Mouse over complex names to check their SCOP superfamilies and click on the L links to see their structure-based sequence logos. Please check the help page for more details.
> 1aoi_D:COMPLEX BETWEEN NUCLEOSOME CORE PARTICLE (H3,H4,H2A,H2B) AND 146 BP LONG DNA FRAGMENT
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------3 ----RG---- ! +---6 +----5x0y_G -10 ! ! ----RG---- ! +---8 +-----------------8jla_C ! ! ! ----RG---- ! ! +---------------------8ox0_C ! ! ----RT---- ! ! +8u14_G +---9 +-----------1 ----RA---- ! +----4 +1zla_C ! ! ! --LCRT---- ! +-5 +-----------8hr1_E ! ! ! ----RA--RA ! ! ! +6a5l_g +------7 +----------------2 ----RG---- ! +8txv_G ! ----RT---- +------------------8grq_A |
> 1b72_A:PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEX
--RT--IAQCNA----MG---- L +---1b72_A +--------2 --RTQTVAQTNA---------- L ! ! +8osb_E +----3 +---1 RART--VTKGNA------KA-- L ! ! +2lkx_A +-------4 ! ------NCIC--RGRG------ L ! ! +------------4xrm_B --5 ! --RC--IAQCNA----YC---- L ! +-----------------3rkq_B ! ----------------YCFAKC L +-------------------------6pe2_B |
> 1bc8_C:STRUCTURES OF SAP-1 BOUND TO DNA SEQUENCES FROM THE E74 AND C-FOS PROMOTERS PROVIDE INSIGHTS INTO HOW ETS PROTEINS DISCRIMINATE BETWEEN RELATED DNA TARGETS
------QCKT--RGATRGNT------ L +-----------------------------8smh_F +-1 ------NCTTNA----VTNT------ L +-2 +-----------------------------1pp7_U ! ! TT----KATTQTTG--LTRTKAFTYT L --3 +-----------------------------2p7c_B ! --KTHG-------------------- +-----------------------------5hdn_C |
> 1cf7_A:STRUCTURAL BASIS OF DNA RECOGNITION BY THE HETERODIMERIC CELL CYCLE TRANSCRIPTION FACTOR E2F-DP
------------NGSA--RGHGSC-------- L +-----------------------------6el8_A +-1 --------ST--TAQC---------------- +-2 +-----------------------------8b4b_W ! ! ------HT----RTITYT-------------- L +-3 +-----------------------------4kfc_B ! ! ----RGTC--DCVA----RGRC----RC---- L +-4 +-----------------------------8hih_Q ! ! --STRGQTQA--ST----------HG--KT-- L +-5 +-----------------------------7t8k_B ! ! RA------------------------------ L --6 +-----------------------------8ac8_C ! --NTHG--RT--YTPT--------------RT L +-----------------------------6qil_A |
> 1ddn_B:DIPHTHERIA TOX REPRESSOR (C102D MUTANT)/TOX DNA OPERATOR COMPLEX
----RGSTRTSTHG------------ L +-----------------------------3zpl_B +-1 --SG--PTPGTT--------HG---- L +-2 +-----------------------------7d98_Q ! ! TT----KATTQTTGLTRTKA--FTYT L +-3 +-----------------------------2p7c_B ! ! --------------YG---------- --4 +-----------------------------3eyi_B ! --DCLT--AGTTRG--RG-------- L +-----------------------------5h3r_A |
> 1du0_A:ENGRAILED HOMEODOMAIN Q50A VARIANT DNA COMPLEX
QTVAQTNA------ L +8osb_E +--------------1 --VTKGNA--KA-- L +-3 +2lkx_A ! ! --NCRG-------- L +--------4 +--------------4xrm_B ! ! --IAQCNAMG---- L ! ! +---1b72_A --5 +-----------2 --IAQCNAYC---- L ! +---3rkq_B ! --VTCCNAQA--RT L +------------------------8g87_X |
> 1emh_A:CRYSTAL STRUCTURE OF HUMAN URACIL-DNA GLYCOSYLASE BOUND TO UNCLEAVED SUBSTRATE-CONTAINING DNA
--------PTLA------ +1emh_A +---1 --------PALA------ +-------------------2 +4uqm_A ! ! KT----TT------RA-- L --3 +---4yig_E ! --SGKT--CGACQT--PG L +-----------------------5hf7_A |
> 1eon_A:ECORV BOUND TO 3'-S-PHOSPHOROTHIOLATE DNA AND CA2+
------NC------TT--SGNATTNT L +--1eon_A +--------------------1 ------NC------TT--STNATTNT L +--2 +--2ge5_B ! ! ----QANT----PANA--YGNG---- L +-3 +-----------------------2gig_A ! ! TAKT------TT----DC-------- L --4 +--------------------------2ost_A ! --------DC---------------- L +---------------------------1dmu_A |
> 1eqz_E:X-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE AT 2.5 A RESOLUTION
--RG---- +-----------------------------5x0y_G ! --RT---- ! +8u14_G ! +-1 --RA---- ! +-------------------3 +1zla_C ! ! ! --RG---- ! ! +8ox0_C -11 ! --RG---- ! +--9 +8txv_G ! ! ! +----------------4 --RG---- ! ! ! ! +8jla_C ! ! +--8 --RT---- ! ! ! +8smw_G ! ! ! +------------5 --RA--RA +-----10 +---6 +6a5l_g ! ! ----RA-- ! +------------6g0l_D ! --RA---- ! +7xsx_a ! +--------------2 --RT---- +-------7 +8grq_A ! LCRT---- +--------------8hr1_E |
> 1esg_A:RESTRICTION ENDONUCLEASE BAMHI BOUND TO A NON-SPECIFIC DNA.
------------------RT--SADA +------------1esg_A +------------1 ----SANTYAFG--STNTSAST---- L +-2 +------------1dfm_A ! ! --RC------RT-------------- L +-3 +-------------------------4dav_B ! ! AC------------------------ L --4 +--------------------------7edb_A ! ----RT------NG------------ +---------------------------6bow_A |
> 1f5t_A:DIPHTHERIA TOX REPRESSOR (C102D MUTANT) COMPLEXED WITH NICKEL AND DTXR CONSENSUS BINDING SEQUENCE
----RGSTRTSTHG------------ L +-----------------------------3zpl_B +-1 TT----KATTQTTGLTRTKA--FTYT L +-2 +-----------------------------2p7c_B ! ! --SG--PTPGTT--------HG---- L +-3 +-----------------------------7d98_Q ! ! --DCLT--AGTTRG--RG-------- L --4 +-----------------------------5h3r_A ! --------------YG---------- +-----------------------------3eyi_B |
> 1fjl_B:HOMEODOMAIN FROM THE DROSOPHILA PAIRED PROTEIN BOUND TO A DNA OLIGONUCLEOTIDE
--RT--IAQCNAMG-- L +---1b72_A +------------2 RART--VTKGNA--KA L ! +---2lkx_A +-----3 --RTQTVAQTNA---- L ! ! +8osb_E +-4 +---------------1 ------NCICNARGRG L ! ! +4xrm_B --5 ! --RC--IAQCNAYC-- L ! +----------------------3rkq_B ! ------VTCCNAQA-- L +------------------------8g87_X |
> 1fok_A:STRUCTURE OF RESTRICTION ENDONUCLEASE FOKI BOUND TO DNA
QANARGQGDTNTWCNGNCECSAKGRGMG-------------------- L +------------------------1fok_A +--1 ----------------------------------------YG------ +-2 +------------------------3eyi_B ! ! ----------------------------RC--------IAQCNAYC-- L +-3 +---------------------------3rkq_B ! ! --------------------------------------NCICNARGRG L +-4 +----------------------------4xrm_B ! ! ------------------------------------QTVAQTNA---- L --5 +----------------------------8osb_E ! ------------------------------TTKATTQTTGLTRT--KA L +----------------------------2p7c_B |
> 1hry_A:THE 3D STRUCTURE OF THE HUMAN SRY-DNA COMPLEX SOLVED BY MULTID- DIMENSIONAL HETERONUCLEAR-EDITED AND-FILTERED NMR
RTNGFTIARA--NASG--STYA L +-----------------------------1j47_A ! --NAFTIARC----SGICSTYA L --3 +1hry_A ! +---------------1 RTNGFTMART--NTAT--SAYA +-------------2 +6t78_A ! RCNGFTMARTHTNG----STYA L +---------------6t90_L |
> 1id3_E:CRYSTAL STRUCTURE OF THE YEAST NUCLEOSOME CORE PARTICLE REVEALS FUNDAMENTAL DIFFERENCES IN INTER-NUCLEOSOME INTERACTIONS
RG--RT---- +-----------------------------8grq_A ! RG-------- ! +8jh2_e ! +---------------------3 RGLCRT---- ! ! +8hr1_E ! ! ----RA---- ! ! +--7xsx_a -11 ! +-------------4 ------RA-- ! +---9 ! +--6g0l_D ! ! ! +---7 ----RA---- ! ! ! ! ! +1zla_C ! ! ! ! ! +---------------2 ----RG---- ! ! ! ! +-6 +8ox0_C ! ! ! ! ! ----RG---- ! ! +-8 +---------------8jla_C +-10 ! ----RA--RA ! ! +6a5l_g ! ! +--------------1 ----RG---- ! +-----5 +8txv_G ! ! ----RG---- ! +--------------5x0y_G ! ----RT---- +--------------------------8u14_G |
> 1ig7_A:MSX-1 HOMEODOMAIN/DNA COMPLEX STRUCTURE
RART--VTKGNA--KA-- L +-----------------------------2lkx_A ! --RTQTVAQTNA------ L ! +8osb_E ! +-1 --RT--IAQCNAMG---- L ! +---------2 +1b72_A --6 ! ! ------NCRG-------- L ! +----------3 +--4xrm_B ! ! ! --RC--IAQCNAYC---- L ! +-4 +------------3rkq_B ! ! ! ------VTCCNAQA--RT L +---5 +-----------------------8g87_X ! ------------YCFAKC L +-------------------------6pe2_B |
> 1jfi_B:CRYSTAL STRUCTURE OF THE NC2-TBP-DNA TERNARY COMPLEX
RAAANA------RT +-------1jfi_B +--------------6 --------RA---- ! +-------6g0l_D ! ------RA------ ! +7xsx_a ! +---------------5 --LC--RT------ ! ! +8hr1_E -11 ! ------RT------ ! +-9 +8u14_G ! ! ! +-3 ------RA------ ! ! ! +----------4 +1zla_C ! ! ! ! ! ------RG------ ! ! +-----8 +8ox0_C ! ! ! ------RG------ +---10 +----------8jla_C ! ------RG------ ! +7e9c_G ! +-1 ------RG------ ! +---------2 +8txv_G ! ! ! ------RG------ +-------7 +5x0y_G ! ------RA--RA-- +---------6a5l_g |
> 1jgg_B:EVEN-SKIPPED HOMEODOMAIN COMPLEXED TO AT-RICH DNA
RT--VT----KGNA----KA---- L +-----------------------------2lkx_A ! RT--IA----QCNA--MG------ L ! +----1b72_A +-5 +-------2 RTQTVA----QTNA---------- L ! ! ! ! +8osb_E ! ! +----------3 +---1 ----NC----ICNA--RGRG---- L ! ! ! ! +4xrm_B --6 +-----4 ! RC--IA----QCNA--YC------ L ! ! +------------3rkq_B ! ! ----VT----CCNA--QA----RT L ! +-----------------------8g87_X ! RT----YTNC----NA----KG-- L +-----------------------------8pi8_B |
> 1kx5_G:X-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE, NCP147, AT 1.9 A RESOLUTION
RG--RG---- +-----------------------------8ox0_C +-9 RA--RG---- +-10 +-----------------------------8jla_C ! ! ----RG---- ! +-----------------------------5x0y_G ! ----RA---- ! +---------1zla_C ! +---3 ------RA-- -11 ! +---------6g0l_D ! +---5 ----RT---- ! ! ! +8smw_G ! +----6 +-------------2 ----RA--RA ! ! ! +6a5l_g ! ! ! ----RG---- ! ! +-----------------8txv_G +------8 ----RT---- ! +-----------8u14_G ! +-----4 --LCRT---- ! ! +-----------8hr1_E +----7 ----RA---- ! +7xsx_a +-----------------1 ----RT---- +8grq_A |
> 1le8_A:CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2-3A HETERODIMER BOUND TO DNA COMPLEX
QTVAQTNA---- L +8osb_E +--------------1 --VTKGNA--KA L +-----3 +2lkx_A ! ! --NCICNARGRG L +---4 +--------------4xrm_B ! ! --IAQCNAMG-- L ! ! +---1b72_A --5 +----------------2 --IAQCNAYC-- L ! +---3rkq_B ! --VTCCNAQA-- L +------------------------8g87_X |
> 1le8_B:CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2-3A HETERODIMER BOUND TO DNA COMPLEX
RT--VTKGNAKA---- L +-----------------------------2lkx_A ! RT--IAQCNAMG---- L ! +---1b72_A --4 +------------1 RTQTVAQTNA------ L ! +----2 +---8osb_E ! ! ! RC--IAQCNAYC---- L +-------3 +----------------3rkq_B ! ----NCICNA--RGRG L +---------------------4xrm_B |
> 1mnm_C:YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE
------NCICNARGRG L +-----------------------------4xrm_B +-3 RART--VTKGNA--KA L ! +-----------------------------2lkx_A --4 --RTQTVAQTNA---- L ! +8osb_E ! +---------------1 --RT--IAQCNAMG-- L +------------2 +1b72_A ! --RC--IAQCNAYC-- L +----------------3rkq_B |
> 1puf_A:CRYSTAL STRUCTURE OF HOXA9 AND PBX1 HOMEODOMAINS BOUND TO DNA
RART--VTKGNA--KA-- L +-----------------------------2lkx_A ! --RT--IAQCNAMG---- L ! +----1b72_A --5 +-------2 --RTQTVAQTNA------ L ! ! ! +8osb_E ! +----------3 +---1 ------NCICNARGRG-- L ! ! ! +4xrm_B +-----4 ! --RC--IAQCNAYC---- L ! +------------3rkq_B ! ------VTCCNAQA--RT L +-----------------------8g87_X |
> 1puf_B:CRYSTAL STRUCTURE OF HOXA9 AND PBX1 HOMEODOMAINS BOUND TO DNA
RART--VTKGNAKA---- L +-----------------------------2lkx_A +-2 ------NCICNA--RGRG L +-3 +-----------------------------4xrm_B ! ! --RC--IAQCNAYC---- L --4 +-----------------------------3rkq_B ! --RTQTVAQTNA------ L ! +8osb_E +----------------------------1 --RT--IAQCNAMG---- L +1b72_A |
> 1qbj_C:CRYSTAL STRUCTURE OF THE ZALPHA Z-DNA COMPLEX
NTHG--RT--YTPT--------------RT L +-----------------------------6qil_A +-1 --RGTC--DCVA----RGRC----RC---- L +-2 +-----------------------------8hih_Q ! ! ----ST--TAQC----ST------------ +-3 +-----------------------------8b4b_W ! ! ----HT----RTITYT-------------- L +-4 +-----------------------------4kfc_B ! ! ----------NGSA--RGHGSC-------- L --5 +-----------------------------6el8_A ! STRGQTQA--ST----------HG--KT-- L +-----------------------------7t8k_B |
> 1r7m_B:THE HOMING ENDONUCLEASE I-SCEI BOUND TO ITS DNA RECOGNITION REGION
PTNTYGRGRGQG--EC----KT--RG--VAQC------DTYCNT--------NCQC----------NGKG------------ L +-------------1r7m_B +--------1 ----YTST----------EC--RG--RG----CC--ST--YG------------------YA--------CCKT--KG--TT L +---2 +-------------2qoj_Z ! ! ----ST------EC--AT----YG--NA----CT----------------------RA--ET--RG----ATDT----TA-- L +-3 +----------------------4lq0_A ! ! --------------------------------YC----------QARTRGEC------YA--KG--KG--RTWC-------- L +-4 +--------------------------5t2o_A ! ! --------------------------------CC------------------------RT------KGRTVAEC--QT---- L +-5 +---------------------------4yit_A ! ! --------------------------------CTVA------------------------ST--DA--RGTC--KT--TG-- L --6 +----------------------------5esp_A ! --------------------------------HT------------------------YT--QA--YT--RTWCST--ST-- L +----------------------------5t8d_A |
> 1sax_A:THREE-DIMENSIONAL STRUCTURE OF S.AUREUS METHICILLIN-RESISTANCE REGULATING TRANSCRIPTIONAL REPRESSOR MECI IN COMPLEX WITH 25-BP DS- DNA
TT------KATT--QTTG--LTRT----KA----FTYT L +-----------------------------2p7c_B +-3 ----DCLT--AG--TTRG----RG--------RA---- L +-4 +-----------------------------5h3r_A ! ! --------------------YG---------------- ! +-----------------------------3eyi_B +-5 --------------NASTRTHT--ST------------ L ! ! +---3l2c_A ! ! +-----1 --------------NASTRGHT--STLT---------- L --6 +-------------------2 +---7cby_C ! ! --LANTHGTTET--YTRG-------------------- L ! +---------1f4k_B ! ------PTPG--TT----------------HG------ L +-----------------------------7d98_Q |
> 1sfu_A:CRYSTAL STRUCTURE OF THE VIRAL ZALPHA DOMAIN BOUND TO LEFT-HANDED Z- DNA
----ITRGECSC--SGKG-------- L +-----------------------------5i2d_R +-1 ------RGTC--DCVA--RGRCRC-- L +-2 +-----------------------------8hih_Q ! ! --QTSTRTETTA----RA-------- L --3 +-----------------------------3iyd_H ! VT--HTPTSA----TTKG------YT L +-----------------------------9c4c_G |
> 1u35_G:CRYSTAL STRUCTURE OF THE NUCLEOSOME CORE PARTICLE CONTAINING THE HISTONE DOMAIN OF MACROH2A
--RG---- +--------------------------8ox0_C ! --RA---- ! +--------------1zla_C ! ! --RT---- ! ! +8u14_G ! ! +--------------1 --RG---- -15 +-------12 ! +5x0y_G ! ! ! +-10 --RT---- ! ! ! ! ! +8smw_G ! ! ! ! +--------------4 --RA--RA ! ! +-11 +6a5l_g ! ! ! --RG---- ! ! ! +8txv_G +-14 +--------------5 --RG---- ! +8jla_C ! --RG--RG ! +----------------8kcb_A ! ! --RC---- ! ! +---6qld_f ! ! +------7 ----RA-- +-----13 ! +---6g0l_D ! +--8 LC------ ! ! ! +8bvw_e ! ! +---------6 LCRT---- +--9 +8hr1_E ! --RA---- ! +7xsx_a ! +-2 LARG---- +-------------3 +7unc_a ! --RT---- +8grq_A |
> 1u8r_B:CRYSTAL STRUCTURE OF AN IDER-DNA COMPLEX REVEALS A CONFORMATIONAL CHANGE IN ACTIVATED IDER FOR BASE-SPECIFIC INTERACTIONS
TT----KATTQTTGLTRTKA--FTYT L +-----------------------------2p7c_B +-1 --------------YG---------- +-2 +-----------------------------3eyi_B ! ! --DCLT--AGTTRG--RG-------- L +-3 +-----------------------------5h3r_A ! ! ----RGSTRTSTHG------------ L --4 +-----------------------------3zpl_B ! --SG--PTPGTT--------HG---- L +-----------------------------7d98_Q |
> 1w0t_A:HTRF1 DNA-BINDING DOMAIN IN COMPLEX WITH TELOMERIC DNA.
RT------QTVAQTNA-- L +8osb_E +--1 RT--------VTKGNA-- L +-----------------2 +2lkx_A ! ! RT--------IAQCNAMG L +--------3 +--1b72_A ! ! RC--------IAQCNAYC L --4 +--------------------3rkq_B ! --NARTQT--EC------ L +-----------------------------2kdz_A |
> 1xsd_A:CRYSTAL STRUCTURE OF THE BLAI REPRESSOR IN COMPLEX WITH DNA
TT----KATTQTTG--LTRT--KAFTYT L +-----------------------------2p7c_B +-1 ----RGSTRTSTHG----------RA-- L +-2 +-----------------------------3zpl_B ! ! --DCLT--AGTTRG----RG----RA-- L +-3 +-----------------------------5h3r_A ! ! ----------------YG---------- --4 +-----------------------------3eyi_B ! ----------NASTRTHT--ST------ L +-----------------------------3l2c_A |
> 1z9c_A:CRYSTAL STRUCTURE OF OHRR BOUND TO THE OHRA PROMOTER: STRUCTURE OF MARR FAMILY PROTEIN WITH OPERATOR DNA
--DCLT--AGTTRG----RG--RA---- L +-----------------------------5h3r_A +-1 ----RGTCTA--RGNT------RT---- L +-2 +-----------------------------4fx4_B ! ! ----RGSTRTSTHG--------RA---- L +-3 +-----------------------------3zpl_B ! ! TT----KATTQTTG--LTRTKA--FTYT L --4 +-----------------------------2p7c_B ! ----------------YG---------- +-----------------------------3eyi_B |
> 1zla_C:X-RAY STRUCTURE OF A KAPOSI'S SARCOMA HERPESVIRUS LANA PEPTIDE BOUND TO THE NUCLEOSOMAL CORE
--RA---- +1zla_C +--------------1 --RG---- +--2 +8ox0_C ! ! --RA--RA +---3 +--------------6a5l_g ! ! ----RA-- +-4 +-----------------6g0l_D ! ! --RG---- +--5 +---------------------5x0y_G ! ! --RG---- +-6 +-----------------------8jla_C ! ! LCRT---- --7 +--------------------------8hr1_E ! --RT---- +--------------------------8grq_A |
> 1zlk_A:CRYSTAL STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS HYPOXIC RESPONSE REGULATOR DOSR C-TERMINAL DOMAIN-DNA COMPLEX
----------------YG---- +-----------------------------3eyi_B +-1 --SG--PTPGTT---------- L +-2 +-----------------------------7d98_Q ! ! TT----KATTQTTG--LTRTKA L --3 +-----------------------------2p7c_B ! --DCLT--AG--TTRG--RG-- L +-----------------------------5h3r_A |
> 1zq3_P:NMR SOLUTION STRUCTURE OF THE BICOID HOMEODOMAIN BOUND TO THE CONSENSUS DNA BINDING SITE TAATCC
--RTQTVAQTNA------ L +8osb_E +---------------1 RART--VTKGNA--KA-- L +-3 +2lkx_A ! ! ------NCICNARGRG-- L +--------4 +---------------4xrm_B ! ! --RT--IAQCNAMG---- L ! ! +----1b72_A --5 +-----------2 --RC--IAQCNAYC---- L ! +----3rkq_B ! ------------YCFAKC L +-------------------------6pe2_B |
> 2a07_J:CRYSTAL STRUCTURE OF FOXP2 BOUND SPECIFICALLY TO DNA.
------------------NAST--RGHT--STLT-------- L +------7cby_C +--1 ------ST----------NAST--RTHT--ST---------- L +------2 +------3l2c_A ! ! --------RGSTRT--STHG----------------RA---- L +-------3 +---------3zpl_B ! ! RT--LA--NTHGTTET--YTRG-------------------- L +-4 +----------------1f4k_B ! ! --TT--------KATT--QTTG----LTRT----KA--FTYT L +--5 +------------------------2p7c_B ! ! --------------KT----RGAT--RGNT------------ L --6 +--------------------------8smh_F ! --------------------------YG-------------- +-----------------------------3eyi_B |
> 2c6y_A:CRYSTAL STRUCTURE OF INTERLEUKIN ENHANCER-BINDING FACTOR 1 BOUND TO DNA
----------------NASTRGHT--STLT------ L +------7cby_C +---1 ------ST--------NASTRTHT--ST-------- L +-----------2 +------3l2c_A ! ! --TT--------KATTQTTG--LTRT----KA--FT L +-3 +----------2p7c_B ! ! RT--LA--NTHGTTETYTRG---------------- L +----4 +----------------------1f4k_B ! ! ----------RGSTRTSTHG------------RA-- L --5 +------------------------3zpl_B ! --------------SA----------------RG-- +-----------------------------2xcr_U |
> 2d5v_B:CRYSTAL STRUCTURE OF HNF-6ALPHA DNA-BINDING DOMAIN IN COMPLEX WITH THE TTR PROMOTER
----------RTQTVAQTNA---- L +8osb_E +-1 ----------RT--VTKGNA--KA L +---------2 +2lkx_A ! ! ----------RT--IAQCNAMG-- L +----3 +-1b72_A ! ! --------------NCICNARGRG L +-------4 +-----------4xrm_B ! ! ----------RC--IAQCNAYC-- L --5 +----------------3rkq_B ! SGQATGCARG-------------- L +------------------------8g87_X |
> 2drp_D:THE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITION
--QA----TC----RA--SCDC--VT-- +-----------------------------5yeg_A +-1 ------HTHGRGTGTT--ACNA--KGRG L +-2 +-----------------------------1tf3_A ! ! --EC--SCKGRG--LT--FCNA------ L +-3 +-----------------------------1ubd_C ! ! --RGSTDCHGTT--RG--DAEG--RG-- L +-4 +-----------------------------6b0o_A ! ! --QAHTTT--QA--TTLAHGTCDTRG-- L +-5 +-----------------------------1g2d_F ! ! RGST--YGYC----QC--TGSTRGYT-- --6 +-----------------------------4is1_C ! --RGSTDCHGTT--RG--DAEG--RG-- L +-----------------------------5kl3_A |
> 2fr4_L:STRUCTURE OF FAB DNA-1 COMPLEXED WITH A STEM-LOOP DNA LIGAND
----YTYTNTEC--HTYT------ +-2fr4_L +-------------------2 NAYAYA--TA--SA------HA-- ! ! +3vw3_L --3 +-1 ----------ST----------WG ! +7v5n_E ! ------------------YA---- +---------------------3vw3_H |
> 2hdd_A:ENGRAILED HOMEODOMAIN Q50K VARIANT DNA COMPLEX
--VTKGNA--KA-- L +-----------------------------2lkx_A ! QTVAQTNA------ L ! +8osb_E ! +-1 --IAQCNAMG---- L ! +---------2 +1b72_A --6 ! ! --NCRG-------- L ! +----------3 +--4xrm_B ! ! ! --IAQCNAYC---- L ! +-4 +------------3rkq_B ! ! ! --VTCCNAQA--RT L +---5 +-----------------------8g87_X ! --------YCFAKC L +-------------------------6pe2_B |
> 2hos_A:PHAGE-SELECTED HOMEODOMAIN BOUND TO UNMODIFIED DNA
--VTKGNA--KA-- L +-----------------------------2lkx_A ! QTVAQTNA------ L ! +8osb_E ! +-1 --IAQCNAMG---- L ! +---------2 +1b72_A --6 ! ! --NCICRG------ L ! +----------3 +--4xrm_B ! ! ! --IAQCNAYC---- L ! +-4 +------------3rkq_B ! ! ! --VTCCNAQA--RT L +---5 +-----------------------8g87_X ! --------YCFAKC L +-------------------------6pe2_B |
> 2ihn_A:CO-CRYSTAL OF BACTERIOPHAGE T4 RNASE H WITH A FORK DNA SUBSTRATE
--IG--STTGLTVA------------NCSGKCFGNGKAKANAKASA--STWTECFCHA----MAHT----RTKCLCNGSC L +------------2ihn_A +----------2 ----------FCRT--KCHANGSA--------------LT------KC----------FTFC----RTLA---------- L ! +------------5hp4_A --3 IT--YTQT--KT-------------------------------------------------------------------- ! +4q0w_A +-----------------------1 ------------AGVG--QC----QCMC---------------------------------------------------- +5zoe_A |
> 2isz_B:CRYSTAL STRUCTURE OF A TWO-DOMAIN IDER-DNA COMPLEX CRYSTAL FORM I
--QT--PTAT--TT----------YT---- +8pw0_A +---------------1 ------RGSTRTSTHG------RA------ L +-----2 +3zpl_B ! ! ----DCLT--AGTTRG--RG---------- L +-3 +---------------5h3r_A ! ! TT------KATTQTTGLTRTKA----FTYT L +-4 +---------------------2p7c_B ! ! ----SG--PTPGTT----------HG---- L --5 +-----------------------7d98_Q ! ----------------YG------------ +-------------------------3eyi_B |
> 2n8a_A:1H, 13C AND 15N CHEMICAL SHIFT ASSIGNMENTS AND SOLUTION STRUCTURE FOR PARP-1 F1F2 DOMAINS IN COMPLEX WITH A DNA SINGLE-STRAND BREAK
--RGSTFGVTPCRG--QCLCIG L +------------2n8a_A +--------1 ------------RGKG--LCIG +--2 +------------3odc_B ! ! --RG--FCVGPG---------- --3 +---------------------3od8_G ! STRG------------------ +------------------------4av1_A |
> 2p5l_D:CRYSTAL STRUCTURE OF A DIMER OF N-TERMINAL DOMAINS OF AHRC IN COMPLEX WITH AN 18BP DNA OPERATOR SITE
TTKATG----LTRT--KAFTYT L +-----------------------------2p7c_B +-2 --------NAHT---------- L ! ! +------7cby_C --3 +----------------------1 ------NASTHT--ST------ L ! +------3l2c_A ! ----------YG---------- +-----------------------------3eyi_B |
> 2p7c_B:SOLUTION STRUCTURE OF THE BACILLUS LICHENIFORMIS BLAI MONOMERIC FORM IN COMPLEX WITH THE BLAP HALF-OPERATOR.
LTNTHG--RTYTPT----------RT L +-----------------------------6qil_A +-1 ----------NGSA--RGHGSC---- L +-2 +-----------------------------6el8_A ! ! --STRGQTQAST----------HGKT L +-3 +-----------------------------7t8k_B ! ! --------STTAQC----ST------ --4 +-----------------------------8b4b_W ! ------KGTGKANGYAST-------- L +-----------------------------1zlk_A |
> 2qby_A:CRYSTAL STRUCTURE OF A HETERODIMER OF CDC6/ORC1 INITIATORS BOUND TO ORIGIN DNA (FROM S. SOLFATARICUS)
----------TTKATTQTTG--LTRT----KAFTYT L +-----------------------------2p7c_B +-1 ------------------NASTHT--STLT------ L +-2 +-----------------------------7cby_C ! ! ----------------------YG------------ --3 +-----------------------------3eyi_B ! NGSGWGFARA-------------------------- L +-----------------------------7aud_E |
> 2uzk_A:CRYSTAL STRUCTURE OF THE HUMAN FOXO3A-DBD BOUND TO DNA
----ST------NASTRTHT--ST---------- L +---3l2c_A +-----1 ------------NASTRGHT--STLT-------- L +------2 +---7cby_C ! ! --------STRTSTHG------------RA---- L +---3 +---------3zpl_B ! ! --LA--NTTTETYTRG------------------ L --4 +----------------1f4k_B ! TT------KATTQTTG--LTRT----KA--FTYT L +--------------------2p7c_B |
> 2ve9_C:XRAY STRUCTURE OF KOPS BOUND GAMMA DOMAIN OF FTSK (P. AERUGINOSA)
------RGSTRT--STHG------------------RA---- L +-----------------------------3zpl_B +-3 TT------KATT--QTTG----LTRT----KA------FTYT L +-4 +-----------------------------2p7c_B ! ! --VTSARGTA----RT-------------------------- L +-5 +-----------------------------6za3_B ! ! ----DCLT--AG--TTRG------RG----------RA---- L +-6 +-----------------------------5h3r_A ! ! ----------------------YG------------------ +-7 +-----------------------------3eyi_B ! ! ------PTPG--TT--------------------HG------ L ! +-----------------------------7d98_Q +-8 ----------------NAST--HT--STLT------------ L ! ! +------7cby_C ! ! +--1 --------------NAST--RTHT--ST-------------- L +-9 +-------------------2 +------3l2c_A ! ! ! LA--NTHGTTET--YTRG------------------------ L ! ! +---------1f4k_B +-10 ! ----EGRTRGRG--YT-------------------------- L ! ! +-----------------------------4yo2_A -11 ! ----ITRGECSC--SGKG------------------------ L ! +-----------------------------5i2d_R ! ------------VT----ST------------WT-------- L +-----------------------------6lxn_A |
> 2xhb_A:CRYSTAL STRUCTURE OF DNA POLYMERASE FROM THERMOCOCCUS GORGONARIUS IN COMPLEX WITH HYPOXANTHINE-CONTAINING DNA
PIPIVIIIPGFIKGRINTNTFCQGMGDARAYT--RG--WGDG--------WG----------------------------RGDA-- L +--------------2xhb_A +--------2 ------IT------------------------------------QGQAVT--FTIGNGSGYGFT--VAKTLT-------------- L ! ! +------------3iay_A +----3 +-1 --------------------------------DG--FA----FG----------------------WC----------KT------ ! ! +------------2dtu_A --4 ! --------------------------RT----------------RC--------LC--SCYG--FAYA------------------ L ! +-----------------------8g9l_A ! ------------------------------------------------------------------------RTPTST------KT L +----------------------------7uin_D |
> 2xkk_C:CRYSTAL STRUCTURE OF MOXIFLOXACIN, DNA, AND A. BAUMANNII TOPO IV (PARE-PARC FUSION TRUNCATE)
KA------SA--------------RGIG---------- +-----------------------------2xcr_U +-1 --RC----ST----------------IA---------- +-2 +-----------------------------3ksb_B ! ! ------------NARGHT--STLT-------------- L +-3 +-----------------------------7cby_C ! ! ----DCLTAGTTRG----RG------------------ L --4 +-----------------------------5h3r_A ! ----------------------------NTATATSTRG L +-----------------------------1dh3_C |
> 2z33_A:SOLUTION STRUCTURE OF THE DNA COMPLEX OF PHOB DNA- BINDING/TRANSACTIVATION DOMAIN
--RGTCDCVA----RGRCRC L +-----------------------------8hih_Q +-1 --HT--RTITYT-------- L +-2 +-----------------------------4kfc_B ! ! ----STTAQC----ST---- +-3 +-----------------------------8b4b_W ! ! LG--TAKGTA----HTRG-- L --4 +-----------------------------6jhe_A ! ------NGSA--RG------ L +-----------------------------6el8_A |
> 3aaf_B:STRUCTURE OF WRN RQC DOMAIN BOUND TO DOUBLE-STRANDED DNA
TT------KATTQTTG--LTRT----KAYT L +-----------------------------2p7c_B ! ------------NASTRGHT--STLT---- L +-3 +------7cby_C ! ! +--1 ------------NASTRTHT--ST------ L ! +-------------------2 +------3l2c_A --4 ! --LANTHGTTETYTRG-------------- L ! +---------1f4k_B ! ------------------YG---------- +-----------------------------3eyi_B |
> 3azk_F:CRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CORE PARTICLE CONTAINING H4K59Q MUTATION
--RA---- +1zla_C +--------------4 --RG---- +---7 +5x0y_G ! ! --RG---- +---9 +---------------8jla_C ! ! --RT---- ! ! +8u14_G ! +-------------------2 --RG---- ! +8ox0_C -11 --RA--RA ! +6a5l_g ! +----------------------1 --RG---- ! ! +8txv_G ! ! --RT---- +-10 +---------8smw_G ! +---------5 ----RA-- ! ! +---------6g0l_D +--8 LC------ ! +8bvw_e ! +--------------3 --RT---- +----6 +8grq_A ! LCRT---- +--------------8hr1_E |
> 3co6_C:CRYSTAL STRUCTURE OF FOXO1 DBD BOUND TO DBE1 DNA
--------NAST--RTHT--ST-------- L +---3l2c_A +-----1 --------NAST--RGHT--STLT------ L +------2 +---7cby_C ! ! --RGSTRTSTHG----------------RA L +--------3 +---------3zpl_B ! ! TT--KATTQTTG----LTRT----KAFT-- L --4 +----------------2p7c_B ! ------KT--RGAT--RGNT---------- L +-------------------------8smh_F |
> 3cro_R:THE PHAGE 434 CRO/OR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTION
QTET--QASG--------ITNG-- L +------------------------7jvt_D +----2 --SGAAKGSGYGST--RT------ L ! ! +---3zkc_A +-3 +--------------------1 ----NTQASAHTSAQT----TTPG L ! ! +---8pi8_B --4 ! ----SGKGSCQTSTRG-------- L ! +-----------------------------6w1a_A ! ----SGQATG--CARG-------- L +-----------------------------8g87_X |
> 3eyi_B:THE CRYSTAL STRUCTURE OF THE SECOND Z-DNA BINDING DOMAIN OF HUMAN DAI (ZBP1) IN COMPLEX WITH Z-DNA
--------HT----RTITYT------------ L +-----------------------------4kfc_B +-1 --LTNTHG--RT--YTPT----------RT-- L +-2 +-----------------------------6qil_A ! ! --------ST--TAQC----ST---------- +-3 +-----------------------------8b4b_W ! ! ----STRGQTQA--ST----------HG--KT L +-4 +-----------------------------7t8k_B ! ! ------KGTG--KANGYA--ST---------- L +-5 +-----------------------------1zlk_A ! ! LG------TA--KGTA----HTRG-------- L --6 +-----------------------------6jhe_A ! --------------NGSA--RGHGSC------ L +-----------------------------6el8_A |
> 3g73_A:STRUCTURE OF THE FOXM1 DNA BINDING
--------------NAST--RGHT--STLT------ L +-------7cby_C +-1 --------------NAST--RTHT--ST-------- L +------2 +-------3l2c_A ! ! ----------STRTSTHG--------------RA-- L +---3 +---------3zpl_B ! ! RT--LANTHGTTETYTRG------------------ L +-----4 +----------------1f4k_B ! ! --TT------KATTQTTG----LTRT----KAFTYT L --5 +--------------------2p7c_B ! ------------KT--RGAT--RGNT---------- L +--------------------------8smh_F |
> 3iay_A:TERNARY COMPLEX OF DNA POLYMERASE DELTA
------IT--------------SAKT------------------QGQAVT--FTITSAQTIGNGSGYGFT--VAKTLTKARGRCNC L +------------3iay_A +----------1 --------------------------------DG--FA----FG----------------------------------KT------ ! +------------2dtu_A --3 PIPIVIIIPGFIKGRINTNTFC----DARAYT--RG--WGDG--------WG---------------------------------- L ! +---------------------2xhb_A +-2 --------------------------------------------RC--------------LC--SCYG--FAYA----KA--RG-- L +---------------------8g9l_A |
> 3kwq_E:STRUCTURAL CHARACTERIZATION OF H3K56Q NUCLEOSOMES AND NUCLEOSOMAL ARRAYS
RG-------- +8jh2_e +--------------2 RG--RT---- +---------6 +8grq_A ! ! RGLCRT---- ! +---------------8hr1_E ! ----RA---- ! +--7xsx_a ! +-------------4 ------RA-- -11 +---7 +--6g0l_D ! ! ! ----RG---- ! +--8 +----------------8ox0_C ! ! ! ----RG---- ! ! +--------------------5x0y_G ! ! ----RG---- +-10 +8txv_G ! +--------------1 ----RA---- ! ! +1zla_C ! +-------5 ----RT---- ! ! ! +-8u14_G +-9 +------------3 ----RG---- ! +-8jla_C ! ----RA--RA +----------------------6a5l_g |
> 3l2c_A:CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF FOXO4 BOUND TO DNA
------ST------NASTRTHT--ST------ L +---3l2c_A +-----1 --------------NASTRGHT--STLT---- L +------2 +---7cby_C ! ! ------------RTSTHG------------RA L +---3 +---------3zpl_B ! ! RT--LA--HGTTETYTRG-------------- L --4 +----------------1f4k_B ! --TT------KATTQTTG--LTRT----KA-- L +--------------------2p7c_B |
> 3mx9_A:MOLECULAR BASIS OF ENGINEERED MEGANUCLEASE TARGETING OF THE ENDOGENOUS HUMAN RAG1 LOCUS
STITQA----ST--RGRGYCTCYC--RG------VCQT--------STITQAKGRGSTNTQT--ATTC--YTSC--VCDTRGSTTG L +------3mx9_A +-------------2 SGMGRGRG--KTYALTVT--TT--KT--SC----TA--RGEC------KGITKG--SGITQAICQATCECDTRG--WTYC--TC-- L ! ! +5e67_A +-3 +-----1 ST--SC--------HTRTTTMT----LTNC----YA----YA----SAFCRGRG------RGQGECSC------RTWCQTRTEC-- L ! ! +7rcf_A --4 ! STITQAKGRGSTNTQTSTATTC----YT--SC--VCDTRGSTKGTG---------------------------------------- L ! +--------------------3mxb_B ! CA--QGVTRTDCYA--RT--FG----RGRGNTDTMCEA------KG---------------------------------------- L +----------------------5a78_B |
> 3q5f_A:CRYSTAL STRUCTURE OF THE SALMONELLA TRANSCRIPTIONAL REGULATOR SLYA IN COMPLEX WITH DNA
----RGSTRTSTHG------RA---- L +-----------------------------3zpl_B +-1 --DCLT--AGTTRG--RG--RA---- L +-2 +-----------------------------5h3r_A ! ! TT----KATTQTTGLTRTKA--FTYT L --3 +-----------------------------2p7c_B ! --------------YG---------- +-----------------------------3eyi_B |
> 3qex_A:RB69 DNA POLYMERASE (L561A/S565G/Y567A) TERNARY COMPLEX WITH DGTP OPPOSITE DT
----------------------------DG--FA--FG------------------------------WC----KT------ +-----------------------------2dtu_A ! ------IT------------------------------QGQAVT--FTITSAQT--IGNGSGYGFT--VAKTLTKARGRCNC L --3 +----------------3iay_A ! +---1 PIPIVIIIPGFIKGRINTNTFCDARAYT--RG--WG--------WG------------------------------------ L +--------2 +----------------2xhb_A ! --------------------------------------RC--------------LC----SCYG--FAYA--------RG-- L +--------------------8g9l_A |
> 3rax_B:DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER T BASE OPPOSITE THE 1-METHYLGUANINE (M1G) LESION
------FT------------PT----------ST----------LT--IT------RG--RA +2agp_B +-----------------------------1 ----VC------AC------------------------------LG----SC--------RA +-2 +4fbt_A ! ! ----VTFT----AT------PC----------ST----------LA--------RART--RG +-3 +-----------------------------1jx4_A ! ! ----VT------AT------PC----------------------LA----------RT--RA +-4 +-----------------------------4ruc_A ! ! FCYC----------TTAT----SCICDCEC--ST----------------SG----RC--RT +-5 +-----------------------------4tqr_A ! ! ----QT--WA------RTST--------------ST--PATA----LT----RG--MTFT-- +-6 +-----------------------------3jaa_A ! ! ----------ST--------WG--------------DTWC--MG------------------ --7 +-----------------------------6x6z_A ! ------------------------------KT------------------------------ +-----------------------------7c97_K |
> 3w99_F:CRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CORE PARTICLE LACKING H4 N- TERMINAL REGION
--RT---- +8u14_G +--------------1 --RG---- ! +5x0y_G +----5 --RA---- ! ! +1zla_C +---7 +--------------3 --RG---- ! ! +8ox0_C +-9 ! LCRT---- ! ! +-------------------8hr1_E ! ! --RG---- ! +-----------------------8jla_C +-10 --RA--RA ! ! +6a5l_g ! ! +--------------------2 --RG---- ! +---8 +8txv_G -11 ! --RT---- ! +--------------------8grq_A ! --RA---- ! +-----------------8rbx_M +--------6 --RG--RG ! +-----8kcb_A +-----------4 ----RA-- +-----6g0l_D |
> 3wkj_D:THE NUCLEOSOME CONTAINING HUMAN TSH2B
------RA-- +-----------------------------6g0l_D ! RT-------- ! +-----9fgq_D ! +-----4 ----RA---- ! ! ! +1zla_C ! +-------5 +-----2 ----RG---- ! ! ! +8ox0_C ! ! ! ----RA--RA -10 +-6 +-----------6a5l_g ! ! ! ----RT---- ! ! ! +8u14_G ! +-7 +-------------------1 ----RG---- ! ! ! +5x0y_G ! ! ! ----RT---- ! +-8 +-------------------8grq_A ! ! ! ----RG---- ! ! ! +8txv_G +-------9 +--------------------3 ----RG---- ! +8jla_C ! --LCRT---- +---------------------8hr1_E |
> 3x1t_G:CRYSTAL STRUCTURE OF NUCLEOSOME CORE PARTICLE CONSISTING OF MOUSE TESTIS SPECIFIC HISTONE VARIANTS H2AA AND H2BA
--RA---- +1zla_C +---------------2 --RG---- +----5 +8ox0_C ! ! --RG---- ! +---------------8jla_C ! --RT---- +-7 +8u14_G ! ! +----------------1 --RG---- ! ! ! +5x0y_G ! +---6 --RG---- ! ! +8txv_G +-8 ! +------------3 --RA--RA ! ! +---4 +6a5l_g ! ! ! ----RA-- --9 ! +------------6g0l_D ! ! LCRT---- ! +----------------------8hr1_E ! --RT---- +-----------------------8grq_A |
> 3x1t_H:CRYSTAL STRUCTURE OF NUCLEOSOME CORE PARTICLE CONSISTING OF MOUSE TESTIS SPECIFIC HISTONE VARIANTS H2AA AND H2BA
----RA-- +-----------------------------6g0l_D +-8 --RG---- ! +-----------------------------8ox0_C ! --RA---- ! +1zla_C --9 +--------------2 --RG---- ! +---------4 +5x0y_G ! ! ! --RG---- ! ! +---------------8jla_C ! ! --RG---- +---7 +8txv_G ! +--------------------1 --RA--RA ! +--5 +6a5l_g ! ! ! --RT---- +-6 +--------------------8grq_A ! --RT---- ! +-----------8u14_G +-----------3 LCRT---- +-----------8hr1_E |
> 3zkc_A:CRYSTAL STRUCTURE OF THE MASTER REGULATOR FOR BIOFILM FORMATION SINR IN COMPLEX WITH DNA.
--SGAAKGSGYGST--RTQG---- L +3zkc_A +--------------1 QTET--QASG--------ITNG-- L +-----2 +7jvt_D ! ! ----SGKGSCQTSTRG-------- L --3 +--------------6w1a_A ! ----NTQASAHTSAQT----TTPG L +--------------------8pi8_B |
> 3zp5_A:CRYSTAL STRUCTURE OF THE DNA BINDING ETS DOMAIN OF THE HUMAN PROTEIN FEV IN COMPLEX WITH DNA
------QCKT--RGATRGNT------ L +-----------------------------8smh_F ! --KTHG-------------------- --3 +--------5hdn_C ! +------------1 ------NCTTNA----VTNT------ L +-------2 +--------1pp7_U ! TT----KATTQTTG--LTRTKAFTYT L +---------------------2p7c_B |
> 4aik_A:CRYSTAL STRUCTURE OF ROVA FROM YERSINIA IN COMPLEX WITH AN INVASIN PROMOTER FRAGMENT
----RGSTRTSTHG--------RA-- L +-----------------------------3zpl_B +-1 --DCLT--AGTTRG----RG--RA-- L +-2 +-----------------------------5h3r_A ! ! TT----KATTQTTG--LTRTKAFTYT L +-3 +-----------------------------2p7c_B ! ! ----------------YG-------- --4 +-----------------------------3eyi_B ! ----------NCTTNAVTNT------ L +-----------------------------1pp7_U |
> 4awl_B:THE NF-Y TRANSCRIPTION FACTOR IS STRUCTURALLY AND FUNCTIONALLY A SEQUENCE SPECIFIC HISTONE
--RA-- +-----------------------------6g0l_D +-5 RT---- +-6 +-----------------------------8grq_A ! ! RT---- +-7 +-----------------------------8hr1_E ! ! RA--RA ! ! +6a5l_g ! +-----------------------------1 RG---- ! +8txv_G +-8 RA---- ! ! +1zla_C ! ! +--------------2 RG---- ! ! +----3 +8ox0_C --9 ! ! ! RG---- ! +---------4 +--------------5x0y_G ! ! RG---- ! +-------------------8jla_C ! RT---- +-----------------------------8u14_G |
> 4awl_C:THE NF-Y TRANSCRIPTION FACTOR IS STRUCTURALLY AND FUNCTIONALLY A SEQUENCE SPECIFIC HISTONE
--RT---- +8u14_G +-1 --RA---- +---------3 +1zla_C ! ! --RG---- +---4 +5x0y_G ! ! --RA--RA +-5 +----------6a5l_g ! ! --RG---- ! ! +8txv_G +---6 +--------------2 --RG---- ! ! +8ox0_C +--7 ! --RG---- ! ! +---------------8jla_C +-8 ! ----RA-- ! ! +-------------------6g0l_D --9 ! --RT---- ! +----------------------8grq_A ! LCRT---- +-----------------------8hr1_E |
> 4cyc_A:CRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND UBDA MOTIFS
RT--IAQCNAMG---- L +---1b72_A +-------2 RTQTVAQTNA------ L ! ! +8osb_E +----3 +---1 RT--VTKGNA--KA-- L ! ! +2lkx_A +-------4 ! ----NCICNARGRG-- L ! ! +-----------4xrm_B +-5 ! RC--IAQCNAYC---- L ! ! +----------------3rkq_B --6 ! ----VTCCNAQA--RT L ! +------------------------8g87_X ! ----------YCFAKC L +-------------------------6pe2_B |
> 4fbu_B:DPO4 POLYMERASE PRE-INSERTION BINARY COMPLEX WITH THE N- (DEOXYGUANOSIN-8-YL)-1-AMINOPYRENE LESION
----VT------AT------PC----------------------LA----------RT--RA +-----------------------------4ruc_A +-2 ------FT------------PT----------ST----------LT--IT------RG--RA ! ! +2agp_B +-3 +-----------------------------1 ----VC------AC------------------------------LG----SC--------RA ! ! +4fbt_A +-4 ! ----VTFT----AT------PC----------ST----------LA--------RART--RG ! ! +-----------------------------1jx4_A +-5 ! FCYC----------TTAT----SCICDCEC--ST----------------SG----RC--RT ! ! +-----------------------------4tqr_A +-6 ! ----QT--WA------RTST--------------ST----TA----LT----RG--MTFT-- ! ! +-----------------------------3jaa_A --7 ! ----------ST--------WG--------------DTWC--MG------------------ ! +-----------------------------6x6z_A ! ------------------------------KT------------------------------ +-----------------------------7c97_K |
> 4g3i_B:CRYSTAL STRUCTURE OF DPO4 IN COMPLEX WITH DNA DUPLEX
----VT------AT------PC----------------------LA------RT--RA +-----------------------------4ruc_A +-2 ------FT------------PT----------ST----------LTIT----RG--RA ! ! +2agp_B +-3 +-----------------------------1 ----VC------AC------------------------------LG--SC------RA ! ! +4fbt_A +-4 ! ----VTFT----AT------PC----------ST----------LA----RART--RG ! ! +-----------------------------1jx4_A +-5 ! FCYC----------TTAT----SCICDCEC--ST--------------SG--RC--RT ! ! +-----------------------------4tqr_A +-6 ! ----QT--WA------RTST--------------ST----TA--LT--RG--MTFT-- ! ! +-----------------------------3jaa_A --7 ! ----------ST--------WG--------------DTWC--MG-------------- ! +-----------------------------6x6z_A ! ------------------------------KT-------------------------- +-----------------------------7c97_K |
> 4g92_B:CCAAT-BINDING COMPLEX FROM ASPERGILLUS NIDULANS WITH DNA
----RA-- +-----------------------------6g0l_D +-6 --RT---- +-7 +-----------------------------8grq_A ! ! LCRT---- +-8 +-----------------------------8hr1_E ! ! --RG---- ! +-----------------------------5x0y_G ! --RA---- --9 +1zla_C ! +---------------1 --RG---- ! +----------4 +8ox0_C ! ! ! --RG---- ! ! +---------------8jla_C +--5 --RT---- ! +--------------8u14_G +-----------3 --RG---- ! +8txv_G +--------------2 --RA--RA +6a5l_g |
> 4g92_C:CCAAT-BINDING COMPLEX FROM ASPERGILLUS NIDULANS WITH DNA
--RG---- +-----------------------------8jla_C +-8 --RG---- ! +-----------------------------8ox0_C ! --RA---- ! +---------1zla_C ! +---3 ----RA-- ! ! +---------6g0l_D ! +-----4 --RA--RA --9 ! ! +6a5l_g ! ! +-------------1 --RG---- ! +-5 +8txv_G ! ! ! --RT---- ! ! ! +8u14_G ! +-6 +-------------------2 --RG---- ! ! ! +5x0y_G +-------7 ! --RT---- ! +--------------------8grq_A ! LCRT---- +---------------------8hr1_E |
> 4h0e_A:CRYSTAL STRUCTURE OF MUTANT ORR3 IN COMPLEX WITH NTD OF ARAR
VTSARGTA----RT------------ L +-----------------------------6za3_B +-1 --ITRGECSC--SGKG---------- L +-2 +-----------------------------5i2d_R ! ! --EGRTRGRG--YT------------ L +-3 +-----------------------------4yo2_A ! ! --------------------YG---- +-4 +-----------------------------3eyi_B ! ! ------------NAST--RTHTST-- L +-5 +-----------------------------3l2c_A ! ! --RG----DTVT----ST------WT L --6 +-----------------------------6lxn_A ! --------SA---------------- +-----------------------------2xcr_U |
> 4hf1_A:CRYSTAL STRUCTURE OF ISCR BOUND TO ITS PROMOTER
TT------KATTQTTGLTRTKAFTYT L +-----------------------------2p7c_B +-1 ----------------YG-------- +-2 +-----------------------------3eyi_B ! ! --VTSARGTA--RT------------ L --3 +-----------------------------6za3_B ! ----EGRTRGRGYT------------ L +-----------------------------4yo2_A |
> 4hn5_B:GR DNA BINDING DOMAIN - TSLP NGRE COMPLEX
----KGVG--RG-- L +-----------------------------5cbx_B +-1 --EC----RGRGRT +-2 +-----------------------------8hbm_B ! ! --DAKG--RGRG-- L +-3 +-----------------------------4iqr_B ! ! CAECKG--KGRG-- L --4 +-----------------------------6l6q_B ! CAECKG--KGRG-- L +-----------------------------7wnh_D |
> 4hqe_A:THE CRYSTAL STRUCTURE OF QSRR-DNA COMPLEX
------RGSTRTSTHG------------RA-- L +-----------------------------3zpl_B +-3 ----DCLT--AGTTRG----RG------RA-- L ! +-----------------------------5h3r_A +-4 ------------NASTRGHT--STLT------ L ! ! +------7cby_C ! ! +------------1 ------------NASTRTHT--ST-------- L +-5 +---------2 +------3l2c_A ! ! ! TT------KATTQTTG--LTRT----KAFTYT L ! ! +-------------------2p7c_B --6 ! ------------------YG------------ ! +-----------------------------3eyi_B ! --VTSARGTA--RT------------------ L +-----------------------------6za3_B |
> 4i2o_B:THE STRUCTURE OF FIXK2 FROM BRADYRHIZOBIUM JAPONICUM
--HT--STAT--STRG---------- L +-----------------------------5lej_A +-2 ----RT----VG--RT---------- ! ! +8h40_X --3 +-----------------------------1 --ITRGECSC--SGKG---------- L ! +5i2d_R ! TT----KATT--QTTGLTRTKAFTYT L +-----------------------------2p7c_B |
> 4i3h_A:A THREE-GATE STRUCTURE OF TOPOISOMERASE IV FROM STREPTOCOCCUS PNEUMONIAE
--KT---------------------------------------- +-----------------------------4juo_C +-1 --KTSA--------------EGIGSC------------------ +-2 +-----------------------------3l4j_A ! ! RCKTSA------------RG--IG--QT---------------- L +-3 +-----------------------------5npk_d ! ! --KG---------------------------------------- +-4 +-----------------------------5iwi_D ! ! ------NASTRGHTSTLTKA------------------------ L --5 +-----------------------------2c6y_A ! ----------------------------RGQGNARTAGQTFTRG L +-----------------------------1gd2_G |
> 4jcy_A:CRYSTAL STRUCTURE OF THE RESTRICTION-MODIFICATION CONTROLLER PROTEIN C.CSP231I OR OPERATOR COMPLEX
--SG--AAKGSGYG--ST--RTQG---- L +3zkc_A +--------------1 QTET----QASG----------ITNG-- L +-----2 +7jvt_D ! ! ------SGKGSCQT--STRG-------- L --3 +--------------6w1a_A ! ----NTQASAHT--SAQT------TTPG L +--------------------8pi8_B |
> 4ka4_B:CRYSTAL STRUCTURE OF A PROTEOLYTICALLY DEFINED ZBETA DOMAIN OF HUMAN DAI (ZBP1, DLM-1)
------HT----RTITYT---------- L +-----------------------------4kfc_B +-1 --STRGQTQA--ST----------HGKT L +-2 +-----------------------------7t8k_B ! ! ------ST--TAQC----ST-------- +-3 +-----------------------------8b4b_W ! ! LTNTHG--RT--YTPT------------ L +-4 +-----------------------------6qil_A ! ! ------------NGSA--RGHGSC---- L --5 +-----------------------------6el8_A ! ----KGTG--KANGYA--ST-------- L +-----------------------------1zlk_A |
> 4kdp_B:TCAR-SSDNA COMPLEX CRYSTAL STRUCTURE REVEALS THE NOVEL SSDNA BINDING MECHANISM OF THE MARR FAMILY PROTEINS
--DCLT--AGTTRG--RG--RA---- L +-----------------------------5h3r_A +-1 ------ST--STHG------RA---- L +-2 +-----------------------------3zpl_B ! ! TT----KATTQTTGLTRTKA--FTYT L --3 +-----------------------------2p7c_B ! --------------YG---------- +-----------------------------3eyi_B |
> 4lln_I:CRYSTAL STRUCTURE OF S. AUREUS MEPR-DNA COMPLEX
--DCLT--AGTTRG----RG--RA---- L +-----------------------------5h3r_A +-1 ----RGTCTA--RGNT------RT---- L +-2 +-----------------------------4fx4_B ! ! ----RGSTRTSTHG--------RA---- L +-3 +-----------------------------3zpl_B ! ! TT----KATTQTTG--LTRTKA--FTYT L +-4 +-----------------------------2p7c_B ! ! ----------------YG---------- --5 +-----------------------------3eyi_B ! --ITRGECSCSGKG-------------- L +-----------------------------5i2d_R |
> 4lup_A:CRYSTAL STRUCTURE OF THE COMPLEX FORMED BY REGION OF E. COLI SIGMAE BOUND TO ITS -10 ELEMENT NON TEMPLATE STRAND
--------SC------PTSC--KTATSCFCRC--DC------TAWTYARTIT--NT--KCNC--VTRA-- L +-----------------------------6jbq_F +-1 IA--LAKARAFT--YTTT--WT------FA--KAYA----HA--YATAQAAT--NT--VA--IT----VT L +-2 +-----------------------------7d7c_F ! ! --DGQG----LGMART--PG--KT----FTRT----TTNTKGAGWTYGRTITTGNTYAICNCYA--RG-- --3 +-----------------------------5zx2_F ! --DG------LG------PG--KT----FTRT----TTNT--AGWTYGRTITTGNT-------------- +-----------------------------6jcy_F |
> 4m8o_A:TERNARY COMPLEX OF DNA POLYMERASE EPSILON WITH AN INCOMING DATP
------IT----------------------------QGQAVT--FTITQTIGNGSGYGFT--VAKTLTRC--NC L +------------3iay_A +----------1 ------------------------DG--FA----FG--------------------------WC---------- ! +------------2dtu_A --3 PIPIVIIIPGFIKGRINTNTFCYT--RG--WGDG--------WG--------------------------DA-- L ! +---------------------2xhb_A +-2 ------------------------------------RC------------LC--SCYG--FAYA----RG---- L +---------------------8g9l_A |
> 4mtd_D:ZINC UPTAKE REGULATOR COMPLEXED WITH ZINC AND DNA
--YAKTPTPG----YTRG------------------ L +--------------4mtd_D +-------1 TT------KATT--QTTG----LTRT----KAFTYT L +--2 +--------------2p7c_B ! ! ----------------------YG------------ +-3 +----------------------3eyi_B ! ! ----RG------VT----STRG-------------- L --4 +-------------------------6lxn_A ! ----------------ST--RGHT--STLT------ L +--------------------------7cby_C |
> 4nhj_A:CRYSTAL STRUCTURE OF KLEBSIELLA PNEUMONIAE RSTA DNA-BINDING DOMAIN IN COMPLEX WITH RSTA BOX
HT--RTITYT------ L +-----------------------------4kfc_B +-1 RGTCDCVA--RGRCRC L +-2 +-----------------------------8hih_Q ! ! --STTAQC--ST---- --3 +-----------------------------8b4b_W ! KGTGKANGYAST---- L +-----------------------------1zlk_A |
> 4on0_B:CRYSTAL STRUCTURE OF NOLR FROM SINORHIZOBIUM FREDII IN COMPLEX WITH OLIGO AA DNA
--DCLT--AG--TTRG------RG----RA---- L +-----------------------------5h3r_A +-1 TT----KATT--QTTG----LTRTKA----FTYT L +-2 +-----------------------------2p7c_B ! ! ----RGSTRT--STHG------------RA---- L +-3 +-----------------------------3zpl_B ! ! --------------------YG------------ +-4 +-----------------------------3eyi_B ! ! --ITRGECSC--SGKG------------------ L --5 +-----------------------------5i2d_R ! --RG------VT----STRG------WT------ L +-----------------------------6lxn_A |
> 4rb3_D:CRYSTAL STRUCTURE OF MAGNETOSPIRILLUM GRYPHISWALDENSE MSR-1 FUR-MN2+- FEOAB1 OPERATOR
KA----SG--AT----YTRG-------------------- L +4rb3_D +------------1 ----YAKTPTPG----YTRG-------------------- L +------4 +4mtd_D ! ! --TT------KATT--QTTG----LTRT----KA--FTYT L +---5 +-------------2p7c_B ! ! --------------VT----STRG----------WT---- L +--6 +--------------------6lxn_A ! ! ----------------NAST--RGHT--STLT-------- L ! ! +------7cby_C --7 +-----------------3 ----------------NAST--RTHT--ST---------- L ! +------3l2c_A ! ----------------QTVA----QTNA------------ L ! +---8osb_E +-----------------------2 ------------------IA----QCNA--YC-------- L +---3rkq_B |
> 4rul_A:CRYSTAL STRUCTURE OF FULL-LENGTH E.COLI TOPOISOMERASE I IN COMPLEX WITH SSDNA
------------------------------------------------RGAGTGFGYGKGTGNGRTFTYTTTRAAGFGAAFAPTRATGRCYTSTST L +----------4rul_A +--------1 ------HCDC--KT--RCRC--RCYTSTPT--WT--PTKTQTRTSTTG------------------------------------------------ L +----2 +----------6cqi_A ! ! ----RTHCDGRT----RCRC--RCYTSTPT--WTKAPAKT--RTSTTG------------------------------------------------ L --3 +-------------------6pcm_B ! ECKC----------DC----DCWCIG--RGRC------VC--RC--TT------------------------------------------------ L +------------------------2o5c_B |
> 4u0y_B:CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAINS OF YVOA IN COMPLEX WITH PALINDROMIC OPERATOR DNA
--VTSARGTA--RT---- L +-----------------------------6za3_B +-1 ----ITRGECSCSGKG-- L +-2 +-----------------------------5i2d_R ! ! RC--EGRTRGRGYT---- L --3 +-----------------------------4yo2_A ! ----------------YG +-----------------------------3eyi_B |
> 4uqm_A:CRYSTAL STRUCTURE DETERMINATION OF URACIL-DNA N-GLYCOSYLASE (UNG) FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH DNA - NEW INSIGHTS INTO THE ROLE OF THE LEUCINE-LOOP FOR DAMAGE RECOGNITION AND REPAIR
--------PALA-- +4uqm_A +--1 --------PTLA-- +--------------------2 +1emh_A ! ! KT----TTRA---- L +--3 +---4yig_E ! ! ----RA--RCQTNT L --4 +------------------------2dp6_A ! VGRG----PG---- +---------------------------1oe4_B |
> 4wuh_B:CRYSTAL STRUCTURE OF E. FAECALIS DNA BINDING DOMAIN LIAR WILD TYPE COMPLEXED WITH 22BP DNA
--KGTG--KANGYAST-- L +-----------------------------1zlk_A +-1 ----ST--TAQC--ST-- +-2 +-----------------------------8b4b_W ! ! NTHG--RT--YTPT---- L --3 +-----------------------------6qil_A ! --RGTC--DCVA--RGRC L +-----------------------------8hih_Q |
> 4wzs_A:CRYSTAL STRUCTURE OF THE MOT1 N-TERMINAL DOMAIN IN COMPLEX WITH TBP AND NC2 BOUND TO A PROMOTER DNA FRAGMENT
RG +8txv_G +--------------1 RG +-------6 +8ox0_C ! ! RA ! +--------------6a5l_g ! RT ! +8u14_G --8 +-2 RA ! +----------4 +1zla_C ! ! ! RG ! +------5 +5x0y_G ! ! ! RG +----7 +----------8jla_C ! RT ! +7zs9_e +-----------------3 RT +8grq_A |
> 4wzs_B:CRYSTAL STRUCTURE OF THE MOT1 N-TERMINAL DOMAIN IN COMPLEX WITH TBP AND NC2 BOUND TO A PROMOTER DNA FRAGMENT
----RA---- +-----------------------------6g0l_D ! --RC------ ! +7xyf_B ! +-3 ------KG-- ! ! +7nkx_f ! +---------5 --RA------ ! ! ! +1zla_C --9 ! +-2 --RG------ ! +---6 +8ox0_C ! ! ! --RT------ ! ! ! +7kbd_C ! +------7 +-----------1 --RG------ ! ! ! +5x0y_G ! ! ! KT-------- L +------8 ! +-7cvo_A ! +-------------4 --RG------ ! +-8jla_C ! --RA----RA +----------------------6a5l_g |
> 4x0p_B:TERNARY COMPLEX OF HUMAN DNA POLYMERASE THETA C-TERMINAL DOMAIN BINDING DDATP OPPOSITE A TETRAHYDROFURAN AP SITE ANALOG
------------------------NA--KG----------RC----NT--QC--------------------NG--YGATRT--QG--HC L +--4x0p_B +--------------2 ----------------------------KA----------------NT------------------------------------QG--HT L ! +--6xbu_A +-----3 --------------------------RC------------RA--NGNG----YG--YT--SCYC------------------NTQT---- L ! ! +6vdd_A +-4 +-----------------1 --NGKGYGMG--RC--EG--------------SGHGVC---------------------------------------------------- ! ! +1kln_A +-5 ! ------------------------KT----YG--------RG--NGNG----YG--YAIGSCYC----NGRC--FG--------QA--HG ! ! +-----------------------4yfu_D +-6 ! ------------------------KT--------------RG------EGKGYGACYCAC----RC----------QTATRTNGQG--HC L ! ! +-------------------------4xvk_A +-7 ! ------------------AAVAAAKC--------------RT--NGNC--TC----YCMCSAHARAQAEA------------NGQG---- ! ! +--------------------------6fbc_A +-8 ! ----------------------------------------RT--NGQG------------------------------------------ ! ! +---------------------------1x9m_A +-9 ! --------------------------------------------NANC----FC--YG------RG--------------RGNGQC---- L ! ! +---------------------------1tau_A -10 ! LCNC--FC--RC--YA-------------------------------------------------------------------------- ! +-----------------------------4fzx_D ! --------------------------------------RCRCYC----------TTYT----------------------------HT-- L +-----------------------------1msw_D |
> 4x23_D:CRYSTAL STRUCTURE OF CENP-C IN COMPLEX WITH THE NUCLEOSOME CORE PARTICLE
--RA-- +---------------------------6g0l_D ! RA---- ! +1zla_C ! +---------------------4 RG---- ! ! +8jla_C ! +-7 RT---- ! ! ! +8u14_G +-10 ! +----------------------1 RG---- ! ! ! +8ox0_C ! ! +-8 RC---- ! ! ! ! +---6qld_f ! ! ! ! +-------5 RA---- ! ! ! ! ! ! +7xsx_a ! ! ! +----------6 +---3 RT---- -11 +---9 ! +8grq_A ! ! ! RT---- ! ! +-----------8hr1_E ! ! RA--RA ! ! +6a5l_g ! +-----------------------2 RG---- ! +8txv_G ! RG---- +-----------------------------5x0y_G |
> 4xzq_E:NUCLEOSOME DISASSEMBLY BY RSC AND SWI/SNF IS ENHANCED BY H3 ACETYLATION NEAR THE NUCLEOSOME DYAD AXIS
RG-------- +8jh2_e +--------------2 RG--RT---- +---------5 +8grq_A ! ! RGLCRT---- ! +---------------8hr1_E ! ----RA---- ! +--7xsx_a ! +-------------4 ------RA-- ! +---6 +--6g0l_D -11 ! ! ----RG---- ! +--8 +----------------8ox0_C ! ! ! ----RG---- ! +-9 +--------------------5x0y_G ! ! ! ----RG---- ! ! +-----------------------8jla_C ! ! ----RG---- +-10 +8txv_G ! +-1 ----RA---- ! +-------------------3 +1zla_C ! ! ! ----RA--RA +---7 +6a5l_g ! ----RT---- +--------------------8u14_G |
> 5a78_B:CRYSTAL STRUCTURE OF THE HOMING ENDONUCLEASE I-CVUI IN COMPLEX WITH I- CREI TARGET (C1221) IN THE PRESENCE OF 2 MM MG REVEALING DNA NOT CLEAVED
STITQAKGRG--STNTQTSTATTC------YT--SC--VCDTRGSTKGTG L +-----------------------------3mxb_B +-1 SALTRGRGNT--KT--STECQGTAHAKA----ST--------KGTC---- L +-2 +-----------------------------6uwj_A ! ! --MTHTEC--------RGRGQGKG----NT--------ET--KTRG---- L +-3 +-----------------------------4z1x_A ! ! ST--------SC--LAHTRTTTMT----LT--NC----YA----YA---- L --4 +-----------------------------7rcf_A ! YTSTTC----------YTTC--EC------RG----IA----RGRG---- L +-----------------------------2qoj_Z |
> 5ay8_E:CRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CONTAINING H3.Y
RG-------- +8jh2_e +-------------4 RGLCRT---- ! +8hr1_E +----7 RGLC------ ! ! +8bvw_e +--9 +--------------1 RG--RT---- ! ! +8grq_A ! ! ----RG---- ! +-------------------5x0y_G ! ----RA---- ! +1zla_C -11 +--------------3 ----RA--RA ! ! +6a5l_g ! +-6 ----RG---- ! ! ! +8txv_G ! +-----8 +--------------2 ----RG---- ! ! ! +8ox0_C ! ! ! ----RG---- +-10 +--------------8jla_C ! ----RT---- ! +---------8u14_G +----------5 ------RA-- +---------6g0l_D |
> 5b40_A:THE NUCLEOSOME STRUCTURE CONTAINING H2B-K120 AND H4-K31 MONOUBIQUITINATIONS
--RT---- +-----------------------------8grq_A +-8 LCRT---- ! +-----------------------------8hr1_E ! --RA---- ! +1zla_C ! +-------------3 --RA--RA ! ! +6a5l_g ! ! --RG---- --9 +-5 +8txv_G ! ! ! +--------------1 --RG---- ! ! ! ! +5x0y_G ! ! +-4 --RT---- ! +------6 ! +8u14_G ! ! ! +--------------2 --RG---- ! ! ! +8ox0_C +-------7 ! --RG---- ! +--------------8jla_C ! ----RA-- +---------------------6g0l_D |
> 5bs8_A:CRYSTAL STRUCTURE OF A TOPOISOMERASE II COMPLEX
--SA------------RGIG---------- +-----------------------------2xcr_U +-1 RCST--------------IA---------- +-2 +-----------------------------3ksb_B ! ! ----NASTRGHTSTLT-------------- L --3 +-----------------------------7cby_C ! --------------------NTATATSTRG L +-----------------------------1dh3_C |
> 5cqq_A:CRYSTAL STRUCTURE OF THE DROSOPHILA ZESTE DNA BINDING DOMAIN IN COMPLEX WITH DNA
RA----------YAQTNAAARG L +-----------------------------6wig_A +-1 ------RGKGSGSAQAVC---- L +-2 +-----------------------------5no6_N ! ! --RC------------------ +-3 +-----------------------------6l9z_S ! ! RT--------FTYAQTNAATRG L --4 +-----------------------------6ryd_F ! ----NT---------------- +-----------------------------7tve_F |
> 5e67_A:K103A/K262A DOUBLE MUTANT OF I-SMAMI
SGMGRGRG--KTYALT--VT----TT----KT--SC----TA--RGEC----KGITKG--SGITQAICQATC--ECDTRG--WTYC--TC L +5e67_A +--------------------2 ST--SC--------HT--RT--TTMT----LT--NC----YA----YAWGSAFCRGRG------RGQGECSCYT------RTWCQTRTEC L ! +7rcf_A +------4 STITQA----ST--RG--RG--YCTCYC----RG------VCQT------STITQAKGRGSTNTQT--ATTC----YTSC--VCDTRGST L ! ! +--------------3mx9_A ! +------3 CA--QGVTRTDCYA----RT----FG----RG--RG--DTMCEA---------------------------------------------- L --5 ! +5a78_B ! +--------------1 STITQAKGRGSTNTQT--ST--ATTC----YT----SC--VCDTRGST------------------------------------------ L ! +3mxb_B ! --YTLC--------RGSGECRGVTTG--QG--VG------RTEARGSC------------------------------------------ L +----------------------------5o6i_A |
> 5ed4_A:STRUCTURE OF A PHOP-DNA COMPLEX
----RG--DTVTSTRG----WT---- L +-----------------------------6lxn_A +-1 ------------YG------------ +-2 +-----------------------------3eyi_B ! ! --TTKATTQTTG----LTRT--FTYT L --3 +-----------------------------2p7c_B ! ET------------------------ L +-----------------------------7aud_E |
> 5flv_I:CRYSTAL STRUCTURE OF NKX2-5 AND TBX5 BOUND TO THE NPPA PROMOTER REGION
--------------RGTTATFGFG +-----------------------------4a04_B ! RTQTVAQTNA-------------- L ! +8osb_E --5 +---------------1 RT--VTKGNAKA------------ L ! +-3 +2lkx_A ! ! ! ----NCICNARGRG---------- L +------------4 +---------------4xrm_B ! RT--IAQCNAMG------------ L ! +----1b72_A +-----------2 RC--IAQCNAYC------------ L +----3rkq_B |
> 5gt0_C:CRYSTAL STRUCTURE OF NUCLEOSOME COMPLEX WITH HUMAN TESTIS-SPECIFIC HISTONE VARIANTS, TH2A
--RG---- +8txv_G +-------------------1 --RG---- ! +8ox0_C ! --RT---- ! +8u14_G +--11 +-2 --RA---- ! ! +---------5 +1zla_C ! ! ! ! --RA--RA ! ! +---7 +6a5l_g ! ! ! ! --RG---- ! +----8 +----------8jla_C ! ! --RT---- -12 ! +8smw_G ! +--------------3 --RG---- ! +5x0y_G ! --RG--RG ! +------8kcb_A ! +----------6 ----RA-- ! ! +------6g0l_D +----10 --RA---- ! +7xsx_a ! +--------------4 --RT---- +--9 +8grq_A ! LCRT---- +--------------8hr1_E |
> 5gtc_H:CRYSTAL STRUCTURE OF COMPLEX BETWEEN DMAP-SH CONJUGATED WITH A KAPOSI'S SARCOMA HERPESVIRUS LANA PEPTIDE (5-15) AND NUCLEOSOME CORE PARTICLE
----RA-- +----------------------6g0l_D ! --RT---- +-11 +-------------------8u14_G ! ! ! --RC---- ! ! ! +---6qld_f ! +-10 ! --RA---- ! ! +---6 +7xsx_a ! ! ! ! +-1 LARG---- ! ! ! +---2 +7unc_a ! +-----------7 ! --RT---- ! ! +8grq_A +-12 ! LC------ ! ! ! +8bvw_e ! ! +-------5 LCRT---- ! ! +8hr1_E ! ! --RA---- ! ! +1zla_C ! ! +--------------3 --RG---- -13 ! +----8 +8ox0_C ! ! ! ! --RG---- ! +-----9 +--------------5x0y_G ! ! --RG---- ! +-------------------8jla_C ! --RG---- ! +8txv_G +-------------------------4 --RA--RA +6a5l_g |
> 5gxq_A:THE CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING H3.6
--RT--RG-------------- +6pww_K +--------------1 --RG----------RT------ +------11 +8grq_A ! ! --RG----------RG------ ! +--------------6iy2_A ! HARA----LT----RC------ ! +3kwq_E ! +--------------4 --RG----LC----RT------ ! +-12 +8hr1_E ! ! ! HARAYT--LT----RC------ ! ! +---------------4xzq_E ! ! --RT----LA----RG------ ! +-15 +---------7unc_a ! ! ! +------9 --------------RA------ +----19 ! ! ! ! +1zla_C ! ! ! +-13 +--------6 --------------RG------ ! ! ! ! +5x0y_G ! ! ! ! --RG----------RT------ ! ! +-16 +----------------7zs9_e ! ! ! ! --RCYA--------RG------ ! ! ! ! +---------7ccr_A ! ! ! ! +-------8 --------------RG------ ! ! ! ! ! +---------8ox0_C ! ! ! ! ! --------------RC------ ! ! ! +-14 +7xyf_B ! ! ! ! +-5 ------------------KG-- ! ! ! ! +-----------7 +7nkx_f -20 +-18 ! ! ! --------------RG------ ! ! +--10 +-8jla_C ! ! ! ------------IT-------- ! ! ! +3wkj_D ! ! +-------------2 ----------------RA---- ! ! +6g0l_D ! ! HGRGYG--QC----RG------ ! ! +--------------------7y7i_E ! +-17 --------------RT------ ! ! +7kbd_C ! +--------------------3 --------------RA----RA ! +6a5l_g ! ----------KT---------- L +----------------------------7cvo_A |
> 5hdn_C:CRYSTAL STRUCTURE OF HEAT SHOCK FACTOR1-DBD COMPLEX WITH DS-DNA AND TTT
--KTHG---------------- +--------5hdn_C +------------1 ------NCTTNAVTNT------ L +--2 +--------1pp7_U ! ! ------QCKT--RGNT------ L --3 +---------------------8smh_F ! TT----KATG--LTRTKAFTYT L +------------------------2p7c_B |
> 5hlg_E:STRUCTURE OF REDUCED ABFR BOUND TO DNA
----RGSTRTSTHG------RA---- L +-----------------------------3zpl_B +-1 --DCLT--AGTTRG--RG--RA---- L +-2 +-----------------------------5h3r_A ! ! TT----KATTQTTGLTRTKA--FTYT L --3 +-----------------------------2p7c_B ! --------------YG---------- +-----------------------------3eyi_B |
> 5k5q_D:STRUCTURE OF ASPA-DNA COMPLEX: NOVEL CENTROMERE BINDNG PROTEIN- CENTROMERE COMPLEX
--------RGSTRTSTHG----------------RA---- L +-----------------------------3zpl_B +-4 ------SG--PTPGTT----------------HG------ L ! +-----------------------------7d98_Q ! ----------------NAST--HT--STLT---------- L +-5 +------7cby_C ! ! +-----------1 --------------NAST--RTHT--ST------------ L ! ! +---2 +------3l2c_A ! ! ! ! ----LANTHGTTETYTRG---------------------- L +-6 +------3 +------------------1f4k_B ! ! ! --TT------KATTQTTG----LTRT----KA----FTYT L ! ! +----------------------2p7c_B +-7 ! ------DCLT--AGTTRG------RG--------RA---- L ! ! +-----------------------------5h3r_A +-8 ! ----------------------YG---------------- ! ! +-----------------------------3eyi_B --9 ! RC----EGRTRGRGYT------------------------ L ! +-----------------------------4yo2_A ! ----------NCTTNA------VTNT-------------- L +-----------------------------1pp7_U |
> 5kbj_B:STRUCTURE OF REP-DNA COMPLEX
------------YG-------- +-----------------------------3eyi_B +-1 ----KATTQTTGLTRTKAFTYT L +-2 +-----------------------------2p7c_B ! ! --TTSGLTYA------------ L --3 +-----------------------------2nra_C ! RG-------------------- +-----------------------------8ity_V |
> 5mlu_A:CRYSTAL STRUCTURE OF THE PFV GAG CBS BOUND TO A MONONUCLEOSOME
RG--RT---- +-----------------------------8grq_A ! RG-------- ! +8jh2_e ! +------------------4 RGLCRT---- -10 +----7 +8hr1_E ! ! ! ------RA-- ! ! +-------------------6g0l_D ! ! ----RA--RA ! ! +6a5l_g +----9 +--------------2 ----RG---- ! +-------6 +8txv_G ! ! ! ----RG---- ! ! +--------------8jla_C +-8 ----RT---- ! +8u14_G ! +--------------1 ----RG---- ! ! +5x0y_G +-------5 ----RA---- ! +1zla_C +--------------3 ----RG---- +8ox0_C |
> 5mlu_F:CRYSTAL STRUCTURE OF THE PFV GAG CBS BOUND TO A MONONUCLEOSOME
----RA-- +-----------------------------6g0l_D +-7 --RG---- +-8 +-----------------------------8ox0_C ! ! --RG---- +-9 +-----------------------------8jla_C ! ! --RG---- ! +-----------------------------5x0y_G ! --RA--RA -10 +6a5l_g ! +----------------------1 --RG---- ! ! +8txv_G ! ! --RT---- +------6 +8u14_G ! +-----------2 --RA---- ! +------4 +1zla_C ! ! ! LCRT---- +---5 +-----------8hr1_E ! --RA---- ! +7xsx_a +------------------3 --RT---- +8grq_A |
> 5n8o_A:CRYO EM STRUCTURE OF THE CONJUGATIVE RELAXASE TRAI OF THE F/R1 PLASMID SYSTEM
--------------------VTETRTHTPTVT-- L +-----------------------------6sjf_D +-2 --------------------------DT----RT L +-3 +-----------------------------4n0o_E ! ! ------KATT------------------------ L +-4 +-----------------------------2p7c_B ! ! --SGAT---------------------------- L ! ! +4rb3_D --5 +----------------------------1 ----------KTPTPGYTRG-------------- L ! +4mtd_D ! TT-------------------------------- +-----------------------------8pw0_A |
> 5n9g_C:TFIIIB -TBP/BRF2/DNA AND SANT DOMAIN OF BDP1-
RAYC-------------- +-----------------------------6f40_W +-1 ----RTSTVCKGDCRG-- L +-2 +-----------------------------1w0t_A ! ! ----RTRCET--SAQAKT L --3 +-----------------------------6qec_A ! --------------YGRG +-----------------------------4wcg_A |
> 5o6i_A:STRUCTURES AND DYNAMICS OF MESOPHILIC VARIANTS FROM THE HOMING ENDONUCLEASE I-DMOI
YAKGLG--RT----------QG--EC----------------------------------RT----KT L +6x1j_A +-------------------------1 YGRGRG--------------QG--EC------------------------------------YCNGKG L +---2 +1r7m_B ! ! CGRG--ST--TTKARGQTFA--QG--NG----------------HC--SC----LAQGRGQA------ L +-3 +-------------------------4yit_A ! ! SAYCLC--------------------------------NA--RG----RG--DTIC--RG-------- L +-4 +-----------------------------2fld_B ! ! STIT----------QTST--AT--TC--------------------YT--------DTRGST------ L +-5 +-----------------------------3mxb_B ! ! SAIAQG--------QA----QA--TC------------------------------------------ L +-6 +-----------------------------1t9i_B ! ! ----------------------------ACSTICICRCKCIC--EC----------RC---------- L +-7 +-----------------------------1zzi_A ! ! STIGRG--------LTEC--ST--KG------------------TT--NA------MGRTSC------ L +-8 +-----------------------------5t2n_A ! ! ST--SC----RG--HTRT--TT--MT------------------LT--NC----YA----YA------ L --9 +-----------------------------7rcf_A ! SGIG----------RGQG--DG--TA----------------YC--AT--SC--VCKGRG-------- L +-----------------------------6fb0_A |
> 5o9g_E:STRUCTURE OF NUCLEOSOME-CHD1 COMPLEX
RG-------- +8jh2_e +--------------3 RG--RT---- +---------7 +8grq_A ! ! RGLCRT---- ! +--------------8hr1_E ! ----RA---- ! +1zla_C ! +--------------4 ----RA--RA ! ! +6a5l_g -10 +-5 ----RG---- ! ! ! +8txv_G ! +--6 +--------------2 ----RG---- ! ! ! +8ox0_C ! ! ! ----RG---- ! +--8 +--------------8jla_C ! ! ! ----RT---- ! ! ! +8u14_G +---9 +-----------------1 ----RG---- ! +5x0y_G ! ------RA-- +--------------------6g0l_D |
> 5o9g_F:STRUCTURE OF NUCLEOSOME-CHD1 COMPLEX
--RT---- +8u14_G +---------------1 --RG---- +------5 +5x0y_G ! ! --RG---- ! +---------------8jla_C ! --RG---- ! +8txv_G ! +-2 --RA---- +-8 +---------3 +1zla_C ! ! ! ! --RG---- ! ! +------4 +8ox0_C ! ! ! ! --RA--RA ! ! +-----6 +---------6a5l_g --9 ! ! ! ----RA-- ! +-7 +----------------6g0l_D ! ! --RT---- ! +----------------------8grq_A ! LCRT---- +-----------------------8hr1_E |
> 5o9g_G:STRUCTURE OF NUCLEOSOME-CHD1 COMPLEX
--RA---- +1zla_C +--------------5 --RA--RA ! +6a5l_g +------7 --RG---- ! ! +8txv_G ! +--------------1 --RG---- +-10 +8ox0_C ! ! --RG--RG ! ! +-----8kcb_A ! ! +------------6 ----RA-- ! +--8 +-----6g0l_D +-11 ! LCRT---- ! ! +------------------8hr1_E ! ! --RT---- ! ! +8smw_G ! ! +-------------------4 --RG---- ! ! ! +8jla_C -12 +--9 LC------ ! ! +8bvw_e ! +-------------------3 --RT---- ! +8grq_A ! --RT---- ! +8u14_G +----------------------2 --RG---- +5x0y_G |
> 5omv_A:TERNARY COMPLEX OF 9N DNA POLYMERASE IN THE REPLICATIVE STATE WITH TWO METAL IONS IN THE ACTIVE SITE
------IT------------------------------------QGQAVT--FTITSAQTIGNGSGYGFT--VAKTLTKARGRCNC L +------------3iay_A +----------1 --------------------------------DG--FA----FG----------------------------WC----KT------ ! +------------2dtu_A --3 PIPIVIIIPGFIKGRINTNTFCQGMGDARAYT--RG--WGDG--------WG---------------------------------- L ! +---------------------2xhb_A +-2 --------------------------RT----------------RC--------------LC--SCYG--FAYA----KA--RG-- L +---------------------8g9l_A |
> 5omx_C:X-RAY STRUCTURE OF THE H2A-N38C NUCLEOSOME CORE PARTICLE
--RT +---------7jzv_N +-------------------2 --RC ! ! +---6qld_f +-3 +-----1 LC-- ! ! +---8bvw_e --4 ! --RT ! +-----------------------------8com_C ! --RT +-----------------------------7on1_e |
> 5t5k_E:STRUCTURE OF HISTONE-BASED CHROMATIN IN ARCHAEA
--RG---- +-----------------------------5x0y_G ! --RT---- ! +8smw_G ! +----------------1 --RG---- ! ! +8ox0_C ! ! --RA---- ! +--9 +8rbx_M ! ! ! +-------------3 --RT---- -12 ! ! ! +8grq_A ! ! +--8 --RA---- ! ! ! +1zla_C ! +-10 +------------4 --RG---- ! ! ! +8jla_C ! ! ! --RG--RG ! ! ! +8kcb_A ! ! ! +------------2 --RA--RA ! ! ! ! +6a5l_g +-----11 +------7 --RG---- ! ! +---------8txv_G ! +--5 ----RA-- ! +---------6g0l_D ! --RT---- ! +-----------8u14_G +----------6 LCRT---- +-----------8hr1_E |
> 5wcu_N:CRYSTAL STRUCTURE OF 167 BP NUCLEOSOME BOUND TO THE GLOBULAR DOMAIN OF LINKER HISTONE H5
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------4 ----RG---- ! ! +----5x0y_G ! +-----5 ----RT---- ! ! ! +8u14_G ! ! ! +-1 ----RA---- -10 +-6 +-----------3 +1zla_C ! ! ! ! ----RG---- ! ! ! +8ox0_C ! +-7 ! ----RT---- ! ! ! +-----------------8grq_A ! ! ! ----RA--RA ! +-----8 ! +6a5l_g ! ! ! +------------------2 ----RG---- ! ! ! +8txv_G +--9 ! --LCRT---- ! +--------------------8hr1_E ! ----RG---- +--------------------------8jla_C |
> 5x0y_D:COMPLEX OF SNF2-NUCLEOSOME COMPLEX WITH SNF2 BOUND TO SHL2 OF THE NUCLEOSOME
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +--------------4 ----RG---- ! ! +----5x0y_G ! ! ----RA---- -11 ! +1zla_C ! +-----9 +-------------3 ----RA--RA ! ! ! ! +6a5l_g ! ! ! +-7 ----RG---- ! ! ! ! ! +8txv_G ! ! +----8 +--------------1 ----RG---- ! ! ! +8ox0_C +--10 ! ----RG---- ! +--------------8jla_C ! ----RA---- ! +7xsx_a ! +------2 ----RT---- ! +------5 +8grq_A ! ! ! ----RT---- +-----------6 +------8u14_G ! --LCRT---- +-------------8hr1_E |
> 5x0y_G:COMPLEX OF SNF2-NUCLEOSOME COMPLEX WITH SNF2 BOUND TO SHL2 OF THE NUCLEOSOME
--RT +-----------------------------7jzv_N +-1 --RT +-2 +-----------------------------8com_C ! ! IT-- +-3 +-----------------------------6r8y_H ! ! --RA +-4 +-----------------------------5mlu_F ! ! --RC --5 +-----------------------------7nkx_a ! --RT +-----------------------------7on1_e |
> 5x11_A:CRYSTAL STRUCTURE OF BACILLUS SUBTILIS PADR IN COMPLEX WITH OPERATOR DNA
--------------NASTRGHT--STLT------ L +-------7cby_C +-----------1 RT--LANTHGTTETYTRG---------------- L +---------2 +-------1f4k_B ! ! --TT------KATTQTTG--LTRT----KAFTYT L --3 +-------------------2p7c_B ! --------------------YG------------ +-----------------------------3eyi_B |
> 5x5l_H:CRYSTAL STRUCTURE OF RESPONSE REGULATOR ADER DNA BINDING DOMAIN IN COMPLEX WITH AN INTERCISTRONIC REGION
--RGTC--DCVA----RGRC--RC L +-----------------------------8hih_Q +-1 ----HT----RTITYT-------- L +-2 +-----------------------------4kfc_B ! ! --ST--TAQC----ST-------- +-3 +-----------------------------8b4b_W ! ! ------KGTG--KANGYA--ST-- L --4 +-----------------------------1zlk_A ! LGTA--KGTA----HTRG------ L +-----------------------------6jhe_A |
> 5xm1_A:THE MOUSE NUCLEOSOME STRUCTURE CONTAINING H2A, H2B TYPE3-A, H3MM7, AND H4
RG-------- +8jh2_e +---------------3 RG--RT---- +------5 +8grq_A ! ! RGLCRT---- +-7 +---------------8hr1_E ! ! ------RA-- +-8 +----------------------6g0l_D ! ! ----RG---- +-9 +------------------------8ox0_C ! ! ----RG---- ! +-------------------------8jla_C ! ----RA---- -10 +--------------1zla_C ! +----4 ----RA--RA ! ! ! +6a5l_g ! ! +--------------2 ----RG---- +-------6 +8txv_G ! ----RT---- ! +8u14_G +-------------------1 ----RG---- +5x0y_G |
> 5xon_W:RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH SPT4/5 AND TFIIS
TAFCAG----------RCFADARAEGACRCNCMCAC---------- L +--------------------6dg0_A +--------2 ------NCKGCAYGRA------------------------------ L ! ! +---2ayg_A --3 +----------------1 --------KGCGFT-------------------------------- L ! +---2bop_A ! ------------------------------------RAYACAPAWA +-----------------------------3jca_H |
> 5yi2_J:STRUCTURE OF LACTOCOCCUS LACTIS ZITR, WILD TYPE IN COMPLEX WITH DNA
--NTHG--RT--YTPT--------RT L +-----------------------------6qil_A +-1 LG------TA--KGTA----HTRG-- L +-2 +-----------------------------6jhe_A ! ! ------KGTG--KANGYA--ST---- L --3 +-----------------------------1zlk_A ! ------ST--TAQC----ST------ +-----------------------------8b4b_W |
> 5z23_A:CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING A CHIMERIC HISTONE H3/CENP-A CATD
HGRGYG--QC----RG------ +7y7i_E +--------------1 --RG----------RT------ +-11 +8grq_A ! ! --RT--RG-------------- +-12 +--------------6pww_K ! ! HARA----LT----RC------ ! ! +3kwq_E +-16 +-------------3 --RG----LC----RT------ ! ! +8hr1_E +-18 ! --RG----------RT------ ! ! +-----------------7zs9_e ! ! --RG----------RG------ ! +--------------------6iy2_A ! --RT----LA----RG------ ! +---------7unc_a ! +------9 --------------RA----RA ! ! +---------6a5l_g ! ! --RCYA--------RG------ ! +-14 +---------7ccr_A ! ! ! +----8 --------------RG------ -20 ! ! ! +---------5x0y_G ! ! ! ! ------------------KG-- ! ! +-13 +7nkx_f ! ! ! +---------5 --------------RG------ ! ! ! ! +8jla_C ! +-17 +--10 ------------KT-------- L ! ! ! ! +-7cvo_A ! ! ! +--------6 --------------RA------ ! ! ! ! +1zla_C ! ! ! +-4 --------------RG------ ! ! ! +8ox0_C +-19 ! HARAYT--LT----RC------ ! +------------------4xzq_E ! --------------RC------ ! +---7xyf_B ! +------------7 --------------RT------ ! ! +---7kbd_C +--15 ----------IT---------- ! +3wkj_D +----------------2 ----------------RA---- +6g0l_D |
> 5z23_C:CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING A CHIMERIC HISTONE H3/CENP-A CATD
--RG---- +-----------------------------8ox0_C +-7 --RG---- +-8 +-----------------------------5x0y_G ! ! --RG---- ! +-----------------------------8jla_C ! --RT---- ! +8u14_G ! +-------1 --RA---- ! ! +1zla_C --9 +---3 --RG---- ! ! ! +8txv_G ! +------4 +-------2 --RA--RA ! ! ! +6a5l_g ! +-5 ! ----RA-- ! ! ! +-----------6g0l_D +--------6 ! LCRT---- ! +------------------8hr1_E ! --RT---- +--------------------8grq_A |
> 5z3u_A:STRUCTURE OF SNF2-NUCLEOSOME COMPLEX AT SHL2 IN ADP BEFX STATE
RG--RT---- +-----------------------------8grq_A ! RG-------- ! +8jh2_e ! +------------------4 RGLCRT---- -10 +----7 +8hr1_E ! ! ! ------RA-- ! ! +-------------------6g0l_D ! ! ----RA---- +----9 +1zla_C ! +-------------------3 ----RG---- ! ! +5x0y_G ! ! ----RT---- ! ! +8u14_G +---8 +--------------1 ----RG---- ! ! +8ox0_C ! +-5 ----RG---- ! ! ! +8txv_G +-----6 +--------------2 ----RA--RA ! +6a5l_g ! ----RG---- +--------------8jla_C |
> 5zbx_A:THE CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING HISTONE H3.1 CATD(V76Q, K77D)
RG-------- +8jh2_e +--------------3 RG--RT---- +-------7 +8grq_A ! ! RGLCRT---- +-9 +--------------8hr1_E ! ! ----RG---- ! +----------------------8jla_C ! ----RT---- ! +8u14_G ! +--------------1 ----RG---- -10 ! +8ox0_C ! +-5 ----RG---- ! ! ! +8txv_G ! +--6 +--------------2 ----RG---- ! ! ! +5x0y_G ! ! ! ----RA--RA +------8 +--------------6a5l_g ! ----RA---- ! +--------1zla_C +--------4 ------RA-- +--------6g0l_D |
> 6a5l_d:RNA POLYMERASE II ELONGATION COMPLEX STALLED AT SHL(-1) OF THE NUCLEOSOME, WITH FOREIGN DNA
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------3 ----RG---- ! ! +----5x0y_G -10 +------6 ----RA---- ! ! ! +1zla_C ! ! ! +---------------2 ----RG---- ! ! +-5 +8ox0_C ! ! ! ----RG---- ! ! +---------------8jla_C +----9 ----RT---- ! +-----------8u14_G ! +-----4 --LCRT---- ! ! +-----------8hr1_E ! +--7 ----RA--RA ! ! ! +6a5l_g +---8 +-----------------1 ----RG---- ! +8txv_G ! ----RT---- +--------------------8grq_A |
> 6a5l_e:RNA POLYMERASE II ELONGATION COMPLEX STALLED AT SHL(-1) OF THE NUCLEOSOME, WITH FOREIGN DNA
RG------------ +8jh2_e +--------------4 RG------RT---- +----------9 +8grq_A ! ! RG--LC--RT---- ! +--------------8hr1_E ! --------RA---- ! +-7xsx_a -13 +-------------6 ----------RA-- ! ! +-6g0l_D ! +-11 --------RT---- ! ! ! +8u14_G ! ! +---------------3 --------RG---- ! ! +8ox0_C +------12 --RAAANA------ ! +---------------1jfi_B ! ! --------RG---- ! ! +7e9c_G +-10 +--------------1 --------RG---- ! ! +5x0y_G ! ! --------RG---- +-8 +8txv_G ! +-2 --------RA---- ! +---------5 +1zla_C ! ! ! --------RA--RA +----7 +6a5l_g ! --------RG---- +---------8jla_C |
> 6ako_C:CRYSTAL STRUCTURE OF FOXC2 DBD BOUND TO DBE2 DNA
--------------NAST--RGHT--STLT-------- L +------7cby_C +--1 --------------NAST--RTHT--ST---------- L +-------2 +------3l2c_A ! ! --------RGSTRTSTHG--------------RA---- L +------3 +---------3zpl_B ! ! --TT------KATTQTTG----LTRT----KA--FTYT L +-4 +-----------------2p7c_B ! ! RT--LANTHGTTETYTRG-------------------- L +--5 +------------------------1f4k_B ! ! ------------KT--RGAT--RGNT------------ L --6 +--------------------------8smh_F ! ----------------------YG-------------- +-----------------------------3eyi_B |
> 6buz_A:CRYO-EM STRUCTURE OF CENP-A NUCLEOSOME IN COMPLEX WITH KINETOCHORE PROTEIN CENP-N
--RT---- +-----------------------------8grq_A +-9 LCRT---- ! +-----------------------------8hr1_E ! --RA---- ! +--7xsx_a ! +-------------4 ----RA-- -10 +---6 +--6g0l_D ! ! ! --RG---- ! +-7 +----------------8jla_C ! ! ! --RA---- ! ! ! +1zla_C ! ! +--------------------2 --RG---- +-------8 +8ox0_C ! --RG---- ! +8txv_G ! +--------------1 --RG---- ! ! +5x0y_G +------5 --RT---- ! +8u14_G +-------------3 --RA--RA +6a5l_g |
> 6buz_H:CRYO-EM STRUCTURE OF CENP-A NUCLEOSOME IN COMPLEX WITH KINETOCHORE PROTEIN CENP-N
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +--------4 ----RG---- ! ! +----5x0y_G ! ! ----RT---- ! +-----6 +8u14_G -10 ! ! +-1 ----RA---- ! ! ! +----------3 +1zla_C ! ! ! ! ! ----RG---- ! +-7 +--5 +8ox0_C ! ! ! ! ----RG---- ! ! ! +----------8jla_C ! ! ! ----RT---- +-------9 +-------------------8grq_A ! ----RA--RA ! +6a5l_g ! +--------------------2 ----RG---- +-8 +8txv_G ! --LCRT---- +--------------------8hr1_E |
> 6c0w_H:CRYO-EM STRUCTURE OF HUMAN KINETOCHORE PROTEIN CENP-N WITH THE CENTROMERIC NUCLEOSOME CONTAINING CENP-A
----RA-- +--------------------------6g0l_D ! --RA---- ! +1zla_C ! +--------------5 --RG---- -13 +---------9 +5x0y_G ! ! ! --RG---- ! ! +---------------8jla_C ! ! --RA--RA +-12 +6a5l_g ! +---------------------1 --RG---- ! ! +8txv_G ! ! --RT---- ! ! +8u14_G +--11 +-------------------2 --RG---- ! ! +8ox0_C ! ! --RC---- ! ! +---6qld_f +-10 ! --RA---- ! +----7 +7xsx_a ! ! ! +-3 LARG---- ! ! +---4 +7unc_a +----------8 ! --RT---- ! +8grq_A ! LC------ ! +8bvw_e +-------6 LCRT---- +8hr1_E |
> 6c2s_C:TRANSCRIPTIONAL REPRESSOR, COUR, BOUND TO A 23-MER DNA DUPLEX
----RGSTRTSTHG--------RA---- L +-----------------------------3zpl_B +-1 --DCLT--AGTTRG----RG--RA---- L +-2 +-----------------------------5h3r_A ! ! ----RGTCTA--RGNT------RT---- L +-3 +-----------------------------4fx4_B ! ! TT----KATTQTTG--LTRTKA--FTYT L +-4 +-----------------------------2p7c_B ! ! ----------------YG---------- --5 +-----------------------------3eyi_B ! --ITRGECSCSGKG-------------- L +-----------------------------5i2d_R |
> 6cnb_P:YEAST RNA POLYMERASE III INITIAL TRANSCRIBING COMPLEX
--------------YG---------- +-----------------------------3eyi_B +-1 TT----KATTQTTGLTRTKA--FTYT L +-2 +-----------------------------2p7c_B ! ! ----RGSTRTSTHG------RA---- L --3 +-----------------------------3zpl_B ! --DCLT--AGTTRG--RG--RA---- L +-----------------------------5h3r_A |
> 6e0p_A:CRYO-EM STRUCTURE OF THE CENTROMERIC NUCLEOSOME (NATIVE ALPHA SATELLITE DNA) IN COMPLEX WITH A SINGLE CHAIN ANTIBODY FRAGMENT
--RT---- +-----------------------------8grq_A +-5 LCRT---- +-6 +-----------------------------8hr1_E ! ! ----RA-- +-7 +-----------------------------6g0l_D ! ! --RG---- +-8 +-----------------------------8jla_C ! ! --RG---- ! +-----------------------------8ox0_C ! --RG---- --9 +8txv_G ! +-1 --RA---- ! +-------------------3 +1zla_C ! ! ! --RA--RA +---------4 +6a5l_g ! --RT---- ! +8u14_G +-------------------2 --RG---- +5x0y_G |
> 6el8_A:CRYSTAL STRUCTURE OF THE FORKHEAD DOMAIN OF HUMAN FOXN1 IN COMPLEX WITH DNA
------------NAST--RGHT--STLT------ L +------7cby_C +--1 ------------NAST--RTHT--ST-------- L +------2 +------3l2c_A ! ! --------STRTSTHG------------------ L +---3 +---------3zpl_B ! ! RT--LANTTTETYTRG------------------ L +-----4 +----------------1f4k_B ! ! --TT----KATTQTTG----LTRT----KAFTYT L +--5 +--------------------2p7c_B ! ! ----------KT--RGAT--RGNT---------- L +-6 +--------------------------8smh_F ! ! ----------SA---------------------- --7 +-----------------------------2xcr_U ! --------------------YG------------ +-----------------------------3eyi_B |
> 6fq8_A:CLASS 3 : TRANSLOCATED NUCLEOSOME
RG-------- +8jh2_e +--------------2 RG--RT---- +-------5 +8grq_A ! ! RGLCRT---- +-8 +--------------8hr1_E ! ! ----RG---- +-9 +----------------------5x0y_G ! ! ----RG---- ! +------------------------8jla_C ! ----RA---- ! +---------1zla_C -10 +------4 ------RA-- ! ! +---------6g0l_D ! +----6 ----RT---- ! ! ! +8u14_G ! ! +----------------1 ----RG---- +----7 +8ox0_C ! ----RG---- ! +8txv_G +---------------------3 ----RA--RA +6a5l_g |
> 6fq8_D:CLASS 3 : TRANSLOCATED NUCLEOSOME
--RA-- +-----------------------------6g0l_D +-8 RG---- ! +-----------------------------5x0y_G ! RG---- ! +8txv_G ! +--------------1 RG---- --9 +--------4 +8ox0_C ! ! ! RG---- ! ! +--------------8jla_C ! ! RT---- ! ! +8u14_G +-----7 +-2 RA---- ! +----------------3 +1zla_C ! ! ! RA--RA ! +--5 +6a5l_g ! ! ! RT---- +--6 +-----------------8hr1_E ! RT---- +--------------------8grq_A |
> 6ftx_B:STRUCTURE OF THE CHROMATIN REMODELLING ENZYME CHD1 BOUND TO A UBIQUITINYLATED NUCLEOSOME
--RT---- +8u14_G +--------------1 --RG---- ! +8ox0_C ! --RG---- +--5 +8txv_G ! ! +-2 --RA---- ! ! +--------3 +1zla_C ! ! ! ! --RA--RA +---6 +----4 +6a5l_g ! ! ! --RG---- ! ! +---------5x0y_G +-7 ! ----RA-- ! ! +-----------------6g0l_D +-8 ! --RG---- ! ! +---------------------8jla_C --9 ! LCRT---- ! +----------------------8hr1_E ! --RT---- +-----------------------8grq_A |
> 6g0l_D:STRUCTURE OF TWO MOLECULES OF THE CHROMATIN REMODELLING ENZYME CHD1 BOUND TO A NUCLEOSOME
RGIT-- +-----------------------------6r8y_H +-3 ----RT ! +-----------------------------8com_C +-4 ----RC ! ! +---6qld_f ! ! +----------------1 --LC-- --5 +--------2 +---8bvw_e ! ! ----RT ! +--------------------7jzv_N ! ----RT +-----------------------------7on1_e |
> 6iod_A:THE STRUCTURE OF UDGX IN COMPLEX WITH SINGLE-STRANDED DNA
DGDG------------LGRG---- +-----------6iod_A +--------1 ------RA----RCQTNT--QGTC L +---2 +-----------2dp6_A ! ! ------------------RG---- +-3 +--------------------1mwi_A ! ! ----KT----CGQT--PG------ --4 +------------------------4z47_A ! --------TT-------------- L +--------------------------4yig_E |
> 6ir9_e:RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH ELF1 AND SPT4/5, STALLED AT SHL(-1) OF THE NUCLEOSOME
RG------RT---- +-----------------------------8grq_A ! RG------------ ! +8jh2_e ! +------------------3 RG--LC--RT---- ! ! +8hr1_E ! +-10 --------RA---- ! ! ! +1zla_C ! ! ! +--------------2 --------RG---- -13 ! +----6 +8ox0_C ! ! ! --------RG---- ! +-11 +--------------5x0y_G ! ! ! --------RA---- ! ! ! +--7xsx_a ! ! ! +-------------4 ----------RA-- ! ! +----8 +--6g0l_D ! ! ! --------RG---- +---12 +----------------8jla_C ! --RAAANA------ ! +---------------1jfi_B ! +--7 --------RG---- ! ! ! +--------------8txv_G ! ! +-5 --------RG---- +-----9 ! +7e9c_G ! +--------------1 --------RA--RA ! +6a5l_g ! --------RT---- +------------------8u14_G |
> 6iro_A:THE CROSSLINKED COMPLEX OF ISWI-NUCLEOSOME IN THE ADP-BOUND STATE
RG-------- +8jh2_e +---------------2 RG--RT---- +------5 +8grq_A ! ! RGLCRT---- +-7 +---------------8hr1_E ! ! ------RA-- ! +----------------------6g0l_D ! ----RA---- +-8 +1zla_C ! ! +--------------3 ----RG---- ! ! +----4 +8ox0_C ! ! ! ! ----RG---- +--9 +----6 +--------------5x0y_G ! ! ! ----RG---- ! ! +-------------------8jla_C ! ! ----RA--RA -10 ! +6a5l_g ! +--------------------------1 ----RG---- ! +8txv_G ! ----RT---- +-----------------------------8u14_G |
> 6iy2_A:STRUCTURE OF SNF2-MMTV-A NUCLEOSOME COMPLEX AT SHL2 IN ADP STATE
RG-------- +8jh2_e +--------------2 RG--RT---- +-------7 +8grq_A ! ! RGLCRT---- +--9 +---------------8hr1_E ! ! ------RA-- ! +-----------------------6g0l_D ! ----RG---- ! +8txv_G -10 +--------------1 ----RG---- ! +-------5 +8ox0_C ! ! ! ----RG---- ! ! +--------------5x0y_G +---8 ----RA---- ! +1zla_C ! +--------------3 ----RA--RA ! ! +6a5l_g +------6 ----RT---- ! +-8u14_G +-------------4 ----RG---- +-8jla_C |
> 6iy2_G:STRUCTURE OF SNF2-MMTV-A NUCLEOSOME COMPLEX AT SHL2 IN ADP STATE
RG--RG---- +-----------------------------8ox0_C +-7 RA--RG---- +-8 +-----------------------------8jla_C ! ! ----RG---- ! +-----------------------------5x0y_G ! ----RA---- ! +---------1zla_C ! +---2 ------RA-- --9 ! +---------6g0l_D ! +------4 ----RG---- ! ! ! +8txv_G ! +-5 +-------------1 ----RA--RA ! ! ! +6a5l_g ! ! ! ----RT---- +------6 +--------------------8grq_A ! ----RT---- ! +-----------8u14_G +----------3 --LCRT---- +-----------8hr1_E |
> 6iy2_H:STRUCTURE OF SNF2-MMTV-A NUCLEOSOME COMPLEX AT SHL2 IN ADP STATE
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------3 ----RG---- ! +---6 +----5x0y_G -10 ! ! ----RG---- ! +---8 +-----------------8jla_C ! ! ! ----RG---- ! ! +---------------------8ox0_C ! ! ----RT---- ! ! +8u14_G +---9 +-----------1 ----RA---- ! +----4 +1zla_C ! ! ! --LCRT---- ! +-5 +-----------8hr1_E ! ! ! ----RA--RA ! ! ! +6a5l_g +------7 +----------------2 ----RG---- ! +8txv_G ! ----RT---- +------------------8grq_A |
> 6iy3_D:STRUCTURE OF SNF2-MMTV-A NUCLEOSOME COMPLEX AT SHL-2 IN ADP STATE
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +-------4 ----RA---- ! ! ! +1zla_C ! +--5 +---3 ----RG---- ! ! ! +5x0y_G ! ! ! ----RG---- -10 +---6 +------------8jla_C ! ! ! ----RA--RA ! ! ! +6a5l_g ! +-7 +---------------2 ----RG---- ! ! ! +8txv_G ! ! ! ----RT---- ! +-8 +-------------------8grq_A ! ! ! ----RT---- ! ! ! +8u14_G +-------9 +--------------------1 ----RG---- ! +8ox0_C ! --LCRT---- +---------------------8hr1_E |
> 6j99_D:CRYO-EM STRUCTURE OF HUMAN DOT1L IN COMPLEX WITH AN H2B- MONOUBIQUITINATED NUCLEOSOME
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------3 ----RG---- ! ! +----5x0y_G ! +-5 ----RA---- ! ! ! +1zla_C ! +---6 +-----------------2 ----RG---- -10 ! ! +8ox0_C ! ! ! ----RT---- ! +-7 +-------------------8grq_A ! ! ! ----RT---- ! ! ! +-----------8u14_G ! +-8 +-----------4 --LCRT---- ! ! ! +-----------8hr1_E ! ! ! ----RA--RA +--9 ! +6a5l_g ! +-------------------------1 ----RG---- ! +8txv_G ! ----RG---- +--------------------------8jla_C |
> 6jm9_A:CRYO-EM STRUCTURE OF DOT1L BOUND TO UNMODIFIED NUCLEOSOME
RG--RT---- +-----------------------------8grq_A ! RG-------- ! +8jh2_e ! +------------------4 RGLCRT---- ! +----6 +8hr1_E -10 ! ! ------RA-- ! ! +-------------------6g0l_D ! ! ----RA---- ! ! +1zla_C ! ! +---------------3 ----RG---- +----9 +---5 +8ox0_C ! ! ! ----RG---- ! +---7 +---------------8jla_C ! ! ! ----RT---- ! ! ! +8u14_G +-8 +-------------------1 ----RG---- ! +5x0y_G ! ----RA--RA ! +6a5l_g +-----------------------2 ----RG---- +8txv_G |
> 6jma_C:CRYO-EM STRUCTURE OF DOT1L BOUND TO H2B UBIQUITINATED NUCLEOSOME
--RT +---------7jzv_N +-------------------2 --RC ! ! +---6qld_f +-3 +-----1 LC-- ! ! +---8bvw_e --4 ! --RT ! +-----------------------------8com_C ! --RT +-----------------------------7on1_e |
> 6kw4_Y:THE CLASSB RSC-NUCLEOSOME COMPLEX
EG--SCRG L +-----6kw4_Y +-----------1 ------RC +-------2 +-----6ryu_V ! ! --NG--RC --3 +-----------------8wha_K ! ET------ L +-------------------------7aud_E |
> 6kxv_A:CRYSTAL STRUCTURE OF A NUCLEOSOME CONTAINING LEISHMANIA HISTONE H3
LCRT---- +-----------------------------8hr1_E +-8 --RT---- ! +-----------------------------8grq_A ! --RT---- ! +8u14_G ! +-1 --RA---- ! +---------3 +1zla_C --9 ! ! --RG---- ! +-----4 +8ox0_C ! ! ! --RG---- ! +-----5 +---------5x0y_G ! ! ! --RG---- ! +-6 +---------------8jla_C ! ! ! ----RA-- +-----7 +---------------------6g0l_D ! --RA--RA ! +6a5l_g +-----------------------2 --RG---- +8txv_G |
> 6lui_A:CRYSTAL STRUCTURE OF THE SAMD1 WH DOMAIN AND DNA COMPLEX
TT----KATTQTTG----LTRT----KAFTYT L +-----------------------------2p7c_B ! ----------NAST--RGHT--STLT------ L +-3 +------7cby_C ! ! +--------------1 ----------NAST--RTHT--ST-------- L ! +-------2 +------3l2c_A +-4 ! ------QCKT--RGAT--RGNT---------- L ! ! +---------------------8smh_F +-5 ! ------------------YG------------ ! ! +-----------------------------3eyi_B --6 ! --ITRGECSCSGKG------------------ L ! +-----------------------------5i2d_R ! --------SA---------------------- +-----------------------------2xcr_U |
> 6m4d_C:STRUCTURAL MECHANISM OF NUCLEOSOME DYNAMICS GOVERNED BY HUMAN HISTONE VARIANTS H2A.B AND H2A.Z.2.2
--RA---- +1zla_C +-------------3 --RA--RA ! +6a5l_g +-5 --RG---- ! ! +8txv_G +--6 +--------------2 --RG---- ! ! +8ox0_C ! ! --RG---- +--7 +---------------8jla_C ! ! --RT---- ! ! +8u14_G +-9 +------------------1 --RG---- ! ! +5x0y_G ! ! LCRT---- -10 +---------------------8hr1_E ! --RG--RG ! +------8kcb_A ! +-----------4 ----RA-- +----8 +------6g0l_D ! --RT---- +------------------8grq_A |
> 6m4g_G:STRUCTURAL MECHANISM OF NUCLEOSOME DYNAMICS GOVERNED BY HUMAN HISTONE VARIANTS H2A.B AND H2A.Z.2.2
--RA---- +1zla_C +--------------2 --RG---- +--------7 +8ox0_C ! ! --RG---- ! +---------------8jla_C ! --RG---- ! +8txv_G ! +--------------1 --RG---- ! ! +5x0y_G -11 +--6 --RT---- ! ! ! +8smw_G ! ! +-------------3 --RA--RA ! +---8 +6a5l_g ! ! ! --RT---- ! ! ! +-----------8u14_G ! ! +-----5 LCRT---- +-10 +-----------8hr1_E ! --RG--RG ! +------8kcb_A ! +-----------4 ----RA-- +--9 +------6g0l_D ! --RT---- +------------------8grq_A |
> 6mup_E:CENP-A NUCLEOSOME BOUND BY TWO COPIES OF CENP-C(CD) AND TWO COPIES CENP-N(NT)
RG----RT---- +-----------------------------8grq_A +-9 RG--LCRT---- ! +-----------------------------8hr1_E ! --RG-------- ! +---------8jh2_e ! +---------4 --------RA-- -10 ! +---------6g0l_D ! +----6 ------RA---- ! ! ! +1zla_C ! ! ! +---------------3 ------RG---- ! ! +---5 +8ox0_C ! ! ! ------RG---- +----8 +---------------8jla_C ! ------RA--RA ! +6a5l_g ! +---------------------1 ------RG---- ! ! +8txv_G +--7 ------RT---- ! +8u14_G +---------------------2 ------RG---- +5x0y_G |
> 6n1p_A:DIHEDRAL OLIGOMERIC COMPLEX OF GYRA N-TERMINAL FRAGMENT WITH DNA, SOLVED BY CRYOEM IN C2 SYMMETRY
------SA------------------RGIG---------- +-----------------------------2xcr_U +-2 RC----ST--------------------IA---------- ! +-----------------------------3ksb_B +-3 --------NAST--RGHTST-------------------- L ! ! +---------7cby_C --4 +-------------------1 --TTKATT--QTTG------LTRTKA-------------- L ! +---------2p7c_B ! ------------------------------NTATATSTRG L +-----------------------------1dh3_C |
> 6nce_A:CRYSTAL STRUCTURE OF THE HUMAN FOXN3 DNA BINDING DOMAIN IN COMPLEX WITH A FORKHEAD DNA SEQUENCE
------------NAST--RGHT--STLT---- L +------7cby_C +--1 ------------NAST--RTHT--ST------ L +------------2 +------3l2c_A ! ! ------RGSTRTSTHG---------------- L +-3 +---------3zpl_B ! ! RT--LA--TTETYTRG---------------- L +-4 +----------------------1f4k_B ! ! --TT----KATTQTTG----LTRT----KAFT L +--5 +------------------------2p7c_B ! ! ----------KT--RGAT--RGNT-------- L +-6 +--------------------------8smh_F ! ! ----------SA-------------------- --7 +-----------------------------2xcr_U ! --------------------YG---------- +-----------------------------3eyi_B |
> 6nj9_H:ACTIVE STATE DOT1L BOUND TO THE H2B-UBIQUITINATED NUCLEOSOME, 2-TO-1 COMPLEX
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +-----4 ----RG---- ! ! +----5x0y_G ! +--------5 ----RA---- ! ! ! +1zla_C -10 +--6 +----------2 ----RG---- ! ! ! +8ox0_C ! ! ! ----RT---- ! ! +-------------------8grq_A ! +-8 ----RT---- ! ! ! +8u14_G ! ! ! +-------------------3 ----RG---- ! ! +-7 +8jla_C +-----9 ! --LCRT---- ! +--------------------8hr1_E ! ----RA--RA ! +6a5l_g +-----------------------1 ----RG---- +8txv_G |
> 6nn6_D:STRUCTURE OF DOT1L-H2BK120UB NUCLEOSOME COMPLEX
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +-----3 ----RG---- ! ! +----5x0y_G ! +-----4 ----RA---- ! ! ! +1zla_C -10 +------6 +----------2 ----RG---- ! ! ! +8ox0_C ! ! ! ----RG---- ! ! +----------------8jla_C ! +-8 ----RA--RA ! ! ! +6a5l_g ! ! ! +--------------------1 ----RG---- ! ! +--7 +8txv_G +----9 ! ----RT---- ! +--------------------8grq_A ! ----RT---- ! +-----------8u14_G +------------5 --LCRT---- +-----------8hr1_E |
> 6nqa_A:ACTIVE STATE DOT1L BOUND TO THE H2B-UBIQUITINATED NUCLEOSOME, 1-TO-1 COMPLEX
RG--RT-- +-----------------------------8grq_A ! RG------ ! +8jh2_e ! +------------------3 RGLCRT-- ! ! +8hr1_E +-8 +---6 ----RA-- ! ! ! ! +1zla_C ! ! ! ! +---------------2 ----RG-- ! ! ! +---5 +8ox0_C ! ! ! ! ----RG-- ! +-----7 +---------------8jla_C --9 ! ----RARA ! ! +6a5l_g ! ! +--------------1 ----RG-- ! +--------4 +8txv_G ! ! ----RG-- ! +--------------5x0y_G ! ----RT-- +-----------------------------8u14_G |
> 6pwe_G:CRYO-EM STRUCTURE OF NUCLEOSOME CORE PARTICLE
--RG---- +--------------------------8ox0_C ! --RT---- ! +8u14_G ! +-----------1 --RA---- ! +----7 +1zla_C ! ! ! LCRT---- ! +-----8 +-----------8hr1_E ! ! ! --RG---- ! ! ! +8txv_G +-12 ! +----------------4 --RA--RA ! ! ! +6a5l_g ! ! ! --RC---- ! ! +-10 +---6qld_f ! ! ! ! +----5 ----RA-- ! ! ! ! ! +---6g0l_D ! ! ! ! +---------6 --RA---- ! ! ! ! ! ! +7xsx_a -13 ! ! ! ! ! +-2 LC------ ! +-11 +---9 +--------3 +8bvw_e ! ! ! ! --RT---- ! ! ! +8grq_A ! ! ! LARG---- ! ! +------------------7unc_a ! ! --RG---- ! +-----------------------8jla_C ! --RG---- +-----------------------------5x0y_G |
> 6pwe_H:CRYO-EM STRUCTURE OF NUCLEOSOME CORE PARTICLE
----RA-- +---------------------------6g0l_D ! RT------ ! +----9fgq_D ! +------------5 --RG---- ! +---8 +----5x0y_G -13 ! ! --RG---- ! +-10 +-----------------8ox0_C ! ! ! --RG---- ! ! +---------------------8jla_C ! ! --RA---- +-12 +--------------1zla_C ! +---------7 --RG---- ! ! ! +8txv_G ! ! +--------------2 --RA--RA ! ! +6a5l_g +-11 --RT---- ! +------------------8u14_G ! ! --RA---- ! ! +7xsx_a +-----9 +--1 --RT---- ! +-------4 +8grq_A ! ! ! --RC---- +-------6 +--6qld_f ! --RG---- ! +7unc_a +----------3 --RT---- +8hr1_E |
> 6pww_K:CRYO-EM STRUCTURE OF MLL1 IN COMPLEX WITH RBBP5 AND WDR5 BOUND TO THE NUCLEOSOME
RG------RT---- +-----------------------------8grq_A ! RG------------ ! +8jh2_e ! +---------------------3 RG--LC--RT---- ! ! +8hr1_E ! ! --------RA---- ! ! +--7xsx_a ! ! +-------------4 ----------RA-- -13 ! ! +--6g0l_D ! +-10 ! --------RG---- ! ! ! ! +8txv_G ! ! ! +-8 +-1 --------RA---- ! ! ! ! ! +---------2 +1zla_C ! ! ! ! ! ! ! --------RG---- ! ! ! ! ! +----5 +8ox0_C ! ! +----9 ! ! ! --------RA--RA +--12 ! +-6 +---------6a5l_g ! ! ! --------RG---- ! ! +--------------5x0y_G ! ! --------RG---- ! +-----------------8jla_C ! --RAAANA------ ! +---------------1jfi_B ! +------7 --------RG---- +-11 +---------------7e9c_G ! --------RT---- +----------------------8u14_G |
> 6px1_C:SET2 BOUND TO NUCLEOSOME
--RA---- +1zla_C +-------------------3 --RG---- +-8 +5x0y_G ! ! --RT---- ! +--------------------8grq_A ! --RA--RA +-9 +6a5l_g ! ! +--------------1 --RG---- ! ! +----5 +8txv_G ! ! ! ! --RG---- ! +-7 +--------------8jla_C ! ! --RT---- -10 ! +8u14_G ! +-------------------2 --RG---- ! +8ox0_C ! --RG--RG ! +------8kcb_A ! +-----------4 ----RA-- +----6 +------6g0l_D ! LCRT---- +------------------8hr1_E |
> 6qil_A:THE COMPLEX STRUCTURE OF HSROSR-S1 (VNG0258H/ROSR-S1)
--TT------KATT--QTTG----LTRT----KA--FTYT L +-----------------------------2p7c_B ! ------------------NAST--HT--STLT-------- L ! +------7cby_C +-4 +--1 ----------------NAST--RTHT--ST---------- L ! ! +--------------2 +------3l2c_A ! ! ! ! RT--LANTHGTTET--YTRG-------------------- L +-5 +----3 +---------1f4k_B ! ! ! ----------QCKT----RGAT--RGNT------------ L ! ! +------------------------8smh_F +-6 ! ------------------------YG-------------- ! ! +-----------------------------3eyi_B --7 ! ------SG--PTPG--TT----------------HG---- L ! +-----------------------------7d98_Q ! ------RG----DTVT----STRG----------WT---- L +-----------------------------6lxn_A |
> 6qld_f:STRUCTURE OF INNER KINETOCHORE CCAN-CENP-A COMPLEX
--RC---- +6qld_f +--------6 --RT---- ! ! +8u14_G ! +-1 --RG---- +-9 +8ox0_C ! ! --RG---- ! ! +8txv_G +----10 +---------2 --RG---- ! ! +5x0y_G ! ! --RA---- +--12 ! +1zla_C ! ! +-----------5 --RA--RA ! ! +6a5l_g ! ! --RG---- ! +-----------------8jla_C ! LARG---- ! +7unc_a -14 +--3 --RT---- ! +-----------7 +8grq_A ! ! ! --RA---- ! +---11 +--7xsx_a ! ! ! --RA---- ! ! ! +8rbx_M +-13 +--------------4 LCRT---- ! +8hr1_E ! LC------ ! +--------8bvw_e +----------8 ----RA-- +--------6g0l_D |
> 6r1t_D:STRUCTURE OF LSD2/NPAC-LINKER/NUCLEOSOME CORE PARTICLE COMPLEX: CLASS 1, FREE NUCLESOME
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------3 ----RG---- ! ! +----5x0y_G -10 +------6 ----RA---- ! ! ! +1zla_C ! ! ! +---------------1 ----RG---- ! ! +-5 +8ox0_C ! ! ! ----RG---- ! ! +---------------8jla_C +----9 ----RG---- ! +8txv_G ! +-----------------2 ----RA--RA ! ! +6a5l_g ! +--7 ----RT---- ! ! ! +-----------8u14_G +---8 +-----4 --LCRT---- ! +-----------8hr1_E ! ----RT---- +--------------------8grq_A |
> 6r25_E:STRUCTURE OF LSD2/NPAC-LINKER/NUCLEOSOME CORE PARTICLE COMPLEX: CLASS 3
--RG--------RG------ +6iy2_A +-------------------------3 --RG--------RT------ ! +8grq_A ! --RG---------------- ! +----------------------5z3u_A ! ! --RT--RG------------ ! ! +-------------------6pww_K ! ! ! --RT----LA--RG------ ! ! ! +------------------7unc_a ! ! ! ! --------LT---------- ! ! ! ! +------7ywx_E ! ! ! ! +----8 ------------RA------ ! ! +-16 +-14 ! ! +1zla_C ! ! ! ! ! ! ! +-----5 ------------RG------ ! ! ! ! ! ! +--10 +8ox0_C ! +-20 ! ! ! ! ! ! ----------------KG-- ! ! ! ! ! ! ! ! ! +7nkx_f ! ! ! ! ! ! +-12 +----------6 ------------RG------ ! ! ! ! +-15 ! +8jla_C -23 ! ! ! ! ! ------------RG------ ! ! ! +-18 ! ! +3w99_F ! ! ! ! ! ! +---------------2 ------------RG------ ! ! ! ! ! ! +5x0y_G ! ! ! ! ! ! --------EA----RG---- ! ! ! ! ! ! +---------7n8n_A ! ! ! ! ! +--------9 ------------RA----RA ! ! +-19 ! +---------6a5l_g ! ! ! ! --RG--------RT------ ! +-21 ! +--------------------7zs9_e ! ! ! ! ------------RC------ ! ! ! ! +---7xyf_B ! ! ! ! +------------7 ------------RT------ ! ! ! ! ! +---7kbd_C ! ! ! +---13 ----------IT-------- ! ! ! ! +3wkj_D ! ! ! +----------------1 --------------RA---- ! ! ! +6g0l_D +-22 ! HARA----LT--RC------ ! ! +3kwq_E ! ! +-------------4 --RG----LC--RT------ ! ! +---11 +8hr1_E ! ! ! ! --RCYA------RG------ ! +-17 +--------------7ccr_A ! ! HARAYT--LT--RC------ ! +-------------------4xzq_E ! HGRGYG--QC--RG------ +------------------------7y7i_E |
> 6r2v_B:ARABIDOPSIS NF-Y/CCAAT-BOX COMPLEX
--RA-- +-----------------------------6g0l_D +-6 RT---- +-7 +-----------------------------8grq_A ! ! RT---- +-8 +-----------------------------8hr1_E ! ! RG---- ! +-----------------------------5x0y_G ! RA--RA ! +6a5l_g --9 +---------------------1 RG---- ! ! +8txv_G ! +---4 RT---- ! ! ! +8u14_G ! ! +---------------------2 RG---- +---5 +8ox0_C ! RA---- ! +1zla_C +------------------------3 RG---- +8jla_C |
> 6r2v_C:ARABIDOPSIS NF-Y/CCAAT-BOX COMPLEX
----RG---- +8txv_G +--------------1 ----RG---- ! +5x0y_G +-------5 ----RA---- ! ! +1zla_C +-8 +-------------3 ----RG---- ! ! +8ox0_C +-9 ! ----RG---- ! ! +----------------------8jla_C ! ! ----RA--RA ! +-----------------------6a5l_g -10 ----RT---- ! +-----------8u14_G ! +--------4 --LCRT---- ! ! +-----------8hr1_E +----7 RT-------- ! +9fgq_D ! +-------------------2 ------RA-- +-6 +6g0l_D ! ----RT---- +-------------------8grq_A |
> 6r8y_H:CRYO-EM STRUCTURE OF NCP-6-4PP(-1)-UV-DDB
------------RA---- +-----------------------------6g0l_D ! RT---------------- ! +-----6nj9_H ! +-----6 ----------RA------ ! ! ! +1zla_C ! ! +-----2 ----------RG------ ! +--9 +8ox0_C ! ! ! --------------KG-- ! ! ! +7nkx_f ! +---11 +----------4 ----------RG------ ! ! ! +8jla_C ! ! ! ------IT---------- ! ! ! +------3wkj_D ! +----15 +-------8 ----------RA----RA ! ! ! +------6a5l_g ! ! ! RG---------------- ! ! ! +-----3x1t_H ! ! +-------------7 ----------RG------ ! ! +-----5x0y_G -21 ! ----------RC------ ! ! +--7xyf_B ! +-17 +---------5 ----------RT------ ! ! ! ! +--7kbd_C ! ! ! +-10 ------LT--RC------ ! ! ! ! ! +3kwq_E ! ! ! +-13 +------------1 ----------RT------ ! ! ! ! ! +8grq_A ! ! ! +-14 ! ----------RG------ ! ! ! ! ! +---------------6iy2_A ! +-18 ! ! ! ----------RT------ ! ! ! +----16 +------------------7zs9_e ! ! ! ! --LT------RC------ ! ! ! ! +--------------4xzq_E ! ! ! +---12 ----------RG------ ! +-19 ! ! +7ccr_A ! ! ! ! +--------------3 ------LC--RT------ ! ! ! ! +8hr1_E ! ! ! ! ----LA----RG------ +-20 ! +--------------------------7unc_a ! ! --------KT-------- L ! +----------------------------7cvo_A ! --QC------RG------ +----------------------------7y7i_E |
> 6see_H:CLASS2A : CENP-A NUCLEOSOME IN COMPLEX WITH CENP-C CENTRAL REGION
--RA-- +-----------------------------6g0l_D +-8 RG---- ! +-----------------------------8ox0_C ! RA---- ! +1zla_C ! +--------------3 RG---- ! ! +8jla_C --9 +----4 RT---- ! ! ! +8u14_G ! +-5 +---------------1 RG---- ! ! ! +5x0y_G ! ! ! RT---- ! ! +--------------------8hr1_E +-------7 RA--RA ! +6a5l_g ! +--------------------2 RG---- +-6 +8txv_G ! RT---- +--------------------8grq_A |
> 6sjf_B:CRYO-EM STRUCTURE OF THE RECBCD CHI UNRECOGNISED COMPLEX
----RT--RTKTIAQCNA----RT L +-1ig7_A +------2 --------RC--IAQCNAYC---- L ! +-3rkq_B +-------------3 ------YART--VTQTNAMTKTRT L ! ! +1jgg_B +------4 +--------1 --------RT--IAQCNAMG---- L ! ! +1b72_A --5 ! ------------ITATNA--KT-- ! +----------------------1du0_A ! HTKT-------------------- +-----------------------------2pjr_B |
> 6t7a_C:STRUCTURE OF HUMAN SOX11 TRANSCRIPTION FACTOR IN COMPLEX WITH A NUCLEOSOME
--RT---- +8u14_G +--------------1 --RG---- +----11 +8ox0_C ! ! --RA--RA ! +--------------6a5l_g ! --RG---- ! +8txv_G +-14 +--------------2 --RG---- ! ! ! +5x0y_G ! ! +--10 --RT---- ! ! ! ! +8smw_G ! ! ! ! +-3 --RA---- ! +-12 +-------------5 +1zla_C ! ! ! --RG---- ! ! +8jla_C -15 ! LCRT---- ! +------------------8hr1_E ! --RG--RG ! +-------8kcb_A ! +-----------8 LARG---- ! ! +-------7unc_a ! ! --RC---- +--13 +---6qld_f ! +-6 ----RA-- ! +-----7 +---6g0l_D ! ! ! LC------ +-------9 +-----8bvw_e ! --RA---- ! +7xsx_a +-----------4 --RT---- +8grq_A |
> 6t7a_H:STRUCTURE OF HUMAN SOX11 TRANSCRIPTION FACTOR IN COMPLEX WITH A NUCLEOSOME
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------4 ----RG---- ! ! +----5x0y_G -10 +-5 ----RA---- ! ! ! +1zla_C ! +---6 +----------------3 ----RG---- ! ! ! +8jla_C ! ! ! ----RT---- ! ! +-------------------8grq_A +-----9 ----RA--RA ! +6a5l_g ! +---------------------1 ----RG---- ! ! +8txv_G +-8 ----RT---- ! +8u14_G ! +--------------------2 ----RG---- +-7 +8ox0_C ! --LCRT---- +--------------------8hr1_E |
> 6uph_C:STRUCTURE OF A YEAST CENTROMERIC NUCLEOSOME AT 2.7 ANGSTROM RESOLUTION
--RA--RA +6a5l_g +--------------2 --RG---- +----7 +8txv_G ! ! --RA---- +---10 +--------------1zla_C ! ! --RG---- ! +-------------------8jla_C ! --RT---- +-11 +----------8smw_G ! ! +-------5 LCRT---- ! ! ! +----------8hr1_E ! ! ! --RG--RG ! +-----9 +-----8kcb_A ! ! +-----------4 ----RA-- ! ! ! +-----6g0l_D -12 +-8 --RA---- ! ! +7xsx_a ! +-----------------3 --RT---- ! +8grq_A ! --RT---- ! +8u14_G ! +--------------1 --RG---- +----------6 +5x0y_G ! --RG---- +--------------8ox0_C |
> 6uph_D:STRUCTURE OF A YEAST CENTROMERIC NUCLEOSOME AT 2.7 ANGSTROM RESOLUTION
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------3 ----RG---- ! ! +----5x0y_G ! +-----6 ----RA---- ! ! ! +1zla_C -10 ! ! +---------------1 ----RG---- ! ! +-5 +8ox0_C ! ! ! ----RG---- ! +-8 +---------------8jla_C ! ! ! ----RG---- ! ! ! +8txv_G ! ! ! +--------------------2 ----RA--RA +----9 +--7 +6a5l_g ! ! ----RT---- ! +--------------------8grq_A ! ----RT---- ! +-----------8u14_G +------------4 --LCRT---- +-----------8hr1_E |
> 6uw0_B:ENGINEERED VARIANT OF I-ONUI MEGANUCLEASE WITH IMPROVED THERMOSTABILITY AND FULLY ALTERED SPECIFICITY TARGETING CHOLERA TOXIN A SUBUNIT
SA--RARGRGKT----EC--ECKG--STATRGRG--WGCAFT--NTLA------QACT----SA--YTLAKG----FTWCEA--TT L +6uw0_B +------------------------1 SGSTLGQG--KTYARGKGVT----HCHG--QTRTDC--SANA--KG--STTASARGQGRG----------YC--------RTEAVG L +-2 +4yis_A ! ! ------------------------------------------DT----------------------------NGKG---------- L --3 +-------------------------1r7m_B ! ------------------------------------------------------------FC--AG--RC----------FA---- L +---------------------------6dg0_A |
> 6uwj_A:INTERMEDIATE ENGINEERED VARIANT OF I-ONUI MEGANUCLEASE WITH IMPROVED THERMOSTABILITY AND PARTIALLY ALTERED SPECIFICITY
SA--RARGRGKT----EC--ECKG--STATRGRG--WGCAFT--NT--LA------QACT----SA--YTLAKG--FTWCEA--TT L +6uw0_B +------------------------1 SGSTLGQG--KTYARGKGVT----HCHG--QTRTDC--SANA--KGSC--STTASARGQGRG----------YC------RTEAVG L +-2 +4yis_A ! ! --------------------------------EC--------DT------------------------------NG---------- L --3 +-------------------------1r7m_B ! --------------------------------------------------------------FC--AG--RC--------FA---- L +---------------------------6dg0_A |
> 6vdk_A:CRYOEM STRUCTURE OF HIV-1 CONSERVED INTASOME CORE
------KT--------QT----PAQG--AGECRGQG---- L +-----------------------------7u32_A +-1 ----RT----------------PATA----QCRG------ +-2 +-----------------------------6voy_C ! ! TGRTYTTTQT--------------QGTT--ECRCQAAATC L --3 +-----------------------------8b4h_A ! ----------YGLIRG--QIII------------------ +-----------------------------2w36_A |
> 6wig_A:STRUCTURE OF STENOFOLIA PROTEIN HD DOMAIN BOUND WITH DNA
--RT----QTVAQTNA------ L +8osb_E +---------------1 RART------VTKGNA--KA-- L +----3 +2lkx_A ! ! ----------NCICNARGRG-- L +--------4 +---------------4xrm_B ! ! --RT------IAQCNAMG---- L ! ! +----1b72_A --5 +---------------2 --RC------IAQCNAYC---- L ! +----3rkq_B ! ----RCKG----TTTCATDCKG L +-----------------------------4ix7_B |
> 6x0n_f:BRIDGING OF DOUBLE-STRAND DNA BREAK ACTIVATES PARP2/HPF1 TO MODIFY CHROMATIN
------RC------ +7xyf_B +-6 ----------KG-- +--------7 +7nkx_f ! ! ------RG------ +-9 +-8jla_C ! ! ------RT------ ! ! +7kbd_C +----10 +----------1 ------RG------ ! ! +8ox0_C ! ! ------RG------ ! +------------5x0y_G ! IT------------ +--15 +3wkj_D ! ! +-------3 --------RA---- ! ! +-------8 +6g0l_D ! ! ! ! ------RA------ ! +-13 +-------1zla_C ! ! ------RC------ ! ! +7on1_c ! +---------------2 ------RA----RA ! +6a5l_g ! --------RA---- +-18 +7n8n_A ! ! +--------------4 --LC--RT------ ! ! ! +8hr1_E ! ! +-12 --LT--RC------ ! ! ! ! +3kwq_E ! ! ! ! +--------------5 ------RT------ ! ! +-14 +-11 +8grq_A ! ! ! ! ! --LA--RG------ +-19 ! ! ! +--------------7unc_a ! ! ! +-16 ! ------RG------ ! ! ! ! ! +-----------------7ccr_A ! ! +-17 ! --LT--RC------ ! ! ! +-------------------4xzq_E +-20 ! ! ------RT------ ! ! ! +---------------------7zs9_e ! ! ! ------RG------ -21 ! +------------------------6iy2_A ! ! ----KT-------- L ! +-------------------------7cvo_A ! ------RG------ +----------------------------7y7i_E |
> 6x1j_A:THE HOMING ENDONUCLEASE I-WCAI BOUND TO ITS DNA RECOGNITION SEQUENCE
PTNTYGRGRGQGEC------KTRGVAQC------DTYCNTNCQC------NGKG-------- L +-----------------------------1r7m_B +-2 ----------------------------CA--FT----------YTLAKG----FTWC--TT L ! ! +6uw0_B --3 +----------------------------1 ----------QT----------------SAKG----------------YC------RTEAVG L ! +4yis_A ! --------------NCKGRA------------------------------------------ L +-----------------------------2ayg_A |
> 6x59_H:THE MOUSE CGAS CATALYTIC DOMAIN BINDING TO HUMAN ASSEMBLED NUCLEOSOME
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------4 ----RG---- ! ! +----5x0y_G ! +-5 ----RA---- ! ! ! +1zla_C -10 +--6 +----------------3 ----RG---- ! ! ! +8jla_C ! ! ! ----RT---- ! ! +-------------------8grq_A ! +-8 ----RT---- ! ! ! +8u14_G ! ! ! +--------------------1 ----RG---- ! ! +-7 +8ox0_C +-----9 ! --LCRT---- ! +--------------------8hr1_E ! ----RA--RA ! +6a5l_g +-----------------------2 ----RG---- +8txv_G |
> 6y5d_H:STRUCTURE OF HUMAN CGAS (K394E) BOUND TO THE NUCLEOSOME
----RA-- +-----------------------------6g0l_D ! RT------ ! +----9fgq_D ! +-------4 --RA---- ! ! ! +1zla_C ! +------6 +---3 --RG---- ! ! ! +5x0y_G ! ! ! --RG---- -11 +-7 +------------8jla_C ! ! ! --RT---- ! ! ! +8u14_G ! +-8 +-------------------1 --RG---- ! ! ! +8ox0_C ! ! ! --RT---- ! +----9 +-------------------8grq_A ! ! ! --RA--RA ! ! ! +6a5l_g +--10 +--------------------2 --RG---- ! +8txv_G ! --RG--RG ! +-------8kcb_A +-----------------5 --RT---- +-------8hr1_E |
> 6y5d_Q:STRUCTURE OF HUMAN CGAS (K394E) BOUND TO THE NUCLEOSOME
--RT---- +-----------------------------8grq_A +-9 LCRT---- ! +-----------------------------8hr1_E ! --RA---- ! +--7xsx_a ! +-------4 ----RA-- ! ! +--6g0l_D -10 +-5 --RA---- ! ! ! +1zla_C ! ! +---------3 --RA--RA ! +--6 +6a5l_g ! ! ! --RG---- ! ! ! +8txv_G ! ! +------------2 --RG---- +-------------8 +8ox0_C ! --RT---- ! +8u14_G ! +---------------1 --RG---- +-7 +5x0y_G ! --RG---- +---------------8jla_C |
> 6yov_C:OCT4-SOX2-BOUND NUCLEOSOME - SHL+6
--RG---- +8txv_G +--------------1 --RG---- ! +5x0y_G +--9 --RT---- ! ! +8u14_G ! ! +-2 --RA---- +---11 +--------------5 +1zla_C ! ! ! --RG---- ! ! +8ox0_C ! ! --RA--RA ! +-----------------6a5l_g ! --RG---- ! +---------------8jla_C -13 ! --RC---- ! +--10 +---6qld_f ! ! ! +-6 ----RA-- ! ! +---------7 +---6g0l_D ! ! ! LC------ ! ! +-----8bvw_e +-12 --RA---- ! +7xsx_a ! +-3 LARG---- ! +---------4 +7unc_a ! ! ! --RT---- +---------8 +8grq_A ! LCRT---- +---------8hr1_E |
> 6z6p_F:HDAC-PC-NUC
--RG---- +-----------------------------8jla_C ! --RT---- ! +8u14_G ! +-1 --RA---- ! +---------4 +1zla_C ! ! ! --RG---- ! +------5 +5x0y_G -10 ! ! --RA--RA ! +-7 +---------6a5l_g ! ! ! ----RA-- ! +----8 +----------------6g0l_D ! ! ! --RG---- ! ! ! +8txv_G ! ! +------------------2 --RG---- +-----9 +8ox0_C ! --RA---- ! +8rbx_M ! +--------------3 --RT---- +--------6 +8grq_A ! LCRT---- +--------------8hr1_E |
> 7at8_D:HISTONE H3 RECOGNITION BY NUCLEOSOME-BOUND PRC2 SUBUNIT EZH2.
--RG--------RG------ +-------------------6iy2_A ! --RG--------RT------ +-18 +7zs9_e ! ! +--------------1 --RG--------RT------ ! +---10 +8grq_A +-21 ! --RG---------------- ! ! +--------------5z3u_A ! ! --RT----LA--RG------ ! ! +--------------7unc_a ! +------12 HARA----LT--RC------ ! ! +3kwq_E ! +--------------3 --RG----LC--RT------ ! +8hr1_E ! --RT--RG------------ ! +-----------------6pww_K ! ! --RCYA------RG------ ! ! +--------7ccr_A ! +-15 +-----8 ------------RA------ ! ! ! ! ! +1zla_C ! ! ! ! +--------4 ------------RG------ ! ! +-11 +8ox0_C ! ! ! --------EA----RG---- -22 ! ! +--------7n8n_A ! +-16 +-----9 ------------RA----RA ! ! ! +--------6a5l_g ! ! ! --------LT---------- ! ! ! +------7ywx_E ! ! ! +---------7 ------------RG------ ! +-17 ! ! +------5x0y_G ! ! ! +-13 ----------------KG-- ! ! ! ! +7nkx_f ! ! ! +---------------5 ------------RG------ ! ! ! +8jla_C ! +-19 ! HARAYT--LT--RC------ ! ! ! +-------------------4xzq_E ! ! ! ------------RC------ ! ! ! +--7xyf_B ! ! ! +-------------6 ------------RT------ +-20 ! ! +--7kbd_C ! +---14 ----------IT-------- ! ! +3wkj_D ! +----------------2 --------------RA---- ! +6g0l_D ! HGRGYG--QC--RG------ +----------------------7y7i_E |
> 7b0c_A:[4FE-4S]-NSRR COMPLEXED TO 23-BP HMPA1 OPERATOR FRAGMENT
TT------KATT--QTTG--LTRT----KA--FTYT L +-----------------------------2p7c_B +-1 --------------------YG-------------- +-2 +-----------------------------3eyi_B ! ! ----------------NASTHT--STLT-------- L +-3 +-----------------------------7cby_C ! ! ------PTPG--TT----------------HG---- L --4 +-----------------------------7d98_Q ! --VTSARGTA----RT-------------------- L +-----------------------------6za3_B |
> 7b24_C:DTXR-LIKE IRON-DEPENDENT REGULATOR IDER (P39G VARIANT) COMPLEXED WITH COBALT AND ITS CONSENSUS DNA-BINDING SEQUENCE
TT----KATTQTTGLTRTKA--FTYT L +-----------------------------2p7c_B +-1 --------------YG---------- +-2 +-----------------------------3eyi_B ! ! --DCLT--AGTTRG--RG-------- L +-3 +-----------------------------5h3r_A ! ! ----RGSTRTSTHG------------ L --4 +-----------------------------3zpl_B ! --SG--PTPGTT--------HG---- L +-----------------------------7d98_Q |
> 7bhy_A:DNA-BINDING DOMAIN OF DEOR IN COMPLEX WITH THE DNA OPERATOR
RT--LANTHGTTETYTRG-------- L +-----------------------------1f4k_B +-1 --TT------KATTQTTGLTRT--KA L +-2 +-----------------------------2p7c_B ! ! ------DCLT--AGTTRG--RG---- L --3 +-----------------------------5h3r_A ! ----------------------YCFA L +-----------------------------6pe2_B |
> 7bzg_B:STRUCTURE OF BACILLUS SUBTILIS HXLR, WILD TYPE IN COMPLEX WITH FORMALDEHYDE AND DNA
----RGSTRTSTHG------RA---- L +-----------------------------3zpl_B +-1 ------KATTQTTGLTRTKAFT--YT L +-2 +-----------------------------2p7c_B ! ! LANTHGTTETYTRG------------ L +-3 +-----------------------------1f4k_B ! ! --SG--PTPGTT----------HG-- L +-4 +-----------------------------7d98_Q ! ! --DCLT--AGTTRG--RG--RA---- L --5 +-----------------------------5h3r_A ! --------------YG---------- +-----------------------------3eyi_B |
> 7c0j_A:CRYSTAL STRUCTURE OF CHIMERIC MUTANT OF GH5 IN COMPLEX WITH Z-DNA
TT------KATTQTTGLTRTKAFTYT L +-----------------------------2p7c_B +-1 ----------------YG-------- +-2 +-----------------------------3eyi_B ! ! --VTSARGTA--RT------------ L +-3 +-----------------------------6za3_B ! ! ----ITRGECSCSGKG---------- L --4 +-----------------------------5i2d_R ! ----EGRTRGRGYT------------ L +-----------------------------4yo2_A |
> 7c9o_B:CRYSTAL STRUCTURE OF DNA-BOUND CCT/NF-YB/YC COMPLEX (HD1CCT/GHD8/OSNF- YC2)
----RA-- +-----------------------------6g0l_D +-7 --RT---- +-8 +-----------------------------8grq_A ! ! LCRT---- ! +-----------------------------8hr1_E ! --RG---- ! +8txv_G ! +--------------1 --RG---- --9 ! +5x0y_G ! ! --RT---- ! +-5 +8u14_G ! ! ! +-2 --RA---- ! ! ! +---------3 +1zla_C ! ! ! ! ! --RG---- +--------------6 +----4 +8ox0_C ! ! --RA--RA ! +---------6a5l_g ! --RG---- +--------------8jla_C |
> 7c9o_C:CRYSTAL STRUCTURE OF DNA-BOUND CCT/NF-YB/YC COMPLEX (HD1CCT/GHD8/OSNF- YC2)
--RG---- +-----------------------------8ox0_C ! --RG---- ! +8txv_G ! +-1 --RA---- ! +---------3 +1zla_C ! ! ! --RA--RA ! +-------4 +6a5l_g --9 ! ! --RT---- ! ! ! +8u14_G ! +-5 +---------2 --RG---- ! ! ! +5x0y_G ! +-6 ! ----RA-- ! ! ! +-----------------6g0l_D ! +-7 ! --RG---- ! ! ! +-------------------8jla_C +------8 ! --RT---- ! +---------------------8grq_A ! LCRT---- +----------------------8hr1_E |
> 7cby_C:STRUCTURE OF FOXG1 DNA BINDING DOMAIN BOUND TO DBE2 DNA SITE
----------------NAST--RGHT--STLT-------- L +-------7cby_C +-1 ------ST--------NAST--RTHT--ST---------- L +------2 +-------3l2c_A ! ! ----------RGSTRTSTHG--------------RA---- L +---3 +---------3zpl_B ! ! RT--LA--NTHGTTETYTRG-------------------- L +-----4 +----------------1f4k_B ! ! --TT--------KATTQTTG----LTRT----KA--FTYT L --5 +--------------------2p7c_B ! --------------KT--RGAT--RGNT------------ L +--------------------------8smh_F |
> 7ccr_A:STRUCTURE OF THE 2:2 CGAS-NUCLEOSOME COMPLEX
--RT---- +-----------------------------8grq_A +-5 LCRT---- +-6 +-----------------------------8hr1_E ! ! --RG---- +-7 +-----------------------------5x0y_G ! ! --RG---- +-8 +-----------------------------8ox0_C ! ! ----RA-- ! +-----------------------------6g0l_D ! --RG---- ! +8txv_G --9 +-1 --RA---- ! +----------2 +1zla_C ! ! ! --RA--RA ! +-----------3 +6a5l_g ! ! ! --RG---- +------4 +----------8jla_C ! --RT---- +----------------------8u14_G |
> 7cvo_A:CRYSTAL STRUCTURE OF ARABIDOPSIS CO CCT DOMAIN IN COMPLEX WITH NF- YB3/YC4 AND FT CORE2 DNA
--RG--RG +8kcb_A +-1 --RA---- +--------3 +1zla_C ! ! --RA--RA +-5 +6a5l_g ! ! --RG---- ! ! +8txv_G +--7 +---------2 --RG---- ! ! +8ox0_C +--------8 ! --RG---- ! ! +-----------5x0y_G ! ! --RG---- ! +--------------8jla_C -10 --RT---- ! +----------8u14_G ! +--------6 ----RA-- ! ! +----------6g0l_D +---9 LC------ ! +8bvw_e +------------------4 LCRT---- +8hr1_E |
> 7cvo_B:CRYSTAL STRUCTURE OF ARABIDOPSIS CO CCT DOMAIN IN COMPLEX WITH NF- YB3/YC4 AND FT CORE2 DNA
----RA-- +------------------6g0l_D +---6 LC------ ! ! +8bvw_e ! +-----------------3 LCRT---- ! +8hr1_E ! --RA--RA +----8 +6a5l_g ! ! +--------------1 --RG---- ! ! ! +8txv_G ! ! +-------5 --RA---- ! ! ! ! +1zla_C ! ! ! +--------------2 --RG---- +-9 +-7 +8ox0_C ! ! ! --RT---- ! ! ! +8u14_G ! ! +---------------------4 --RG---- -10 ! +8jla_C ! ! --RG---- ! +---------------------------5x0y_G ! --RT---- +-----------------------------8grq_A |
> 7cvq_F:CRYSTAL STRUCTURE OF ARABIDOPSIS CO CCT DOMAIN IN COMPLEX WITH NF- YB2/YC3 AND FT CORE1 DNA
----RA--RA +6a5l_g +------------2 ----RG---- +------4 +8txv_G ! ! ------RA-- +---6 +------------6g0l_D ! ! ----RG---- ! +-------------------8jla_C ! ----RT---- +-----8 +8u14_G ! ! +--------------1 ----RG---- ! ! +------5 +8ox0_C ! ! ! ! ----RG---- ! +-7 +--------------5x0y_G --9 ! ----RA---- ! ! +----------1zla_C ! +----------3 --LCRT---- ! +----------8hr1_E ! RT-------- +-----------------------------9fgq_D |
> 7d1z_H:CRYO-EM STRUCTURE OF SET8-NUCLEOSOME COMPLEX
----RA-- +-----------------------------6g0l_D ! --RG---- ! +8txv_G ! +--------------1 --RG---- ! +----4 +8ox0_C ! ! ! --RG---- --9 +--6 +--------------5x0y_G ! ! ! --RA--RA ! +---7 +-------------------6a5l_g ! ! ! --RG---- ! ! +----------------------8jla_C ! ! --RT---- +--8 +8u14_G ! +-----------2 --RA---- ! +-----3 +1zla_C ! ! ! LCRT---- +--------5 +-----------8hr1_E ! --RT---- +-----------------8grq_A |
> 7d3t_D:CRYSTAL STRUCTURE OF OSPHR2 IN COMPLEX WITH DNA
------NCICNARGRG L +-----------------------------4xrm_B ! RT--QTVAQTNA---- L ! +8osb_E +-4 +--1 RT----VTKGNA--KA L ! ! +---------2 +2lkx_A ! ! ! ! RT----IAQCNAMG-- L --5 +----------------3 +--1b72_A ! ! RC----IAQCNAYC-- L ! +------------3rkq_B ! --NG--NA-------- L +-----------------------------2kdz_A |
> 7d69_B:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING GIARDIA HISTONES
--RG---- +8txv_G +-1 --RA---- +---------4 +1zla_C ! ! --RG---- +-5 +8ox0_C ! ! --RT---- ! ! +8u14_G +-----6 +---------2 --RG---- ! ! +5x0y_G +----8 ! --RA--RA ! ! +-----------6a5l_g ! ! ----RA-- ! +-----------------6g0l_D +-9 LC------ ! ! +8bvw_e ! ! +--------------3 --RT---- -10 +-------7 +8grq_A ! ! LCRT---- ! +--------------8hr1_E ! --RG---- +------------------------8jla_C |
> 7d69_D:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING GIARDIA HISTONES
----RA-- +----------------------6g0l_D ! LC------ +-6 +8bvw_e ! ! +--------------1 --RT---- ! +-------5 +8grq_A +-7 ! LCRT---- ! ! +--------------8hr1_E ! ! --RG---- ! +------------------------8jla_C --9 --RA---- ! +1zla_C ! +------------------------2 --RG---- ! ! +8ox0_C +-8 --RT---- ! +--------------8u14_G +---------4 --RG---- ! +8txv_G +--------------3 --RA--RA +6a5l_g |
> 7d69_E:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING GIARDIA HISTONES
LCRT---- +-----------------------------8hr1_E +-9 --RT---- ! +-----------------------------8grq_A ! LC------ ! +--------8bvw_e ! +----------4 ----RA-- -10 ! +--------6g0l_D ! +--7 --RA---- ! ! ! +1zla_C ! ! ! +---------------3 --RG---- ! ! +---6 +8ox0_C ! ! ! --RG---- +------8 +---------------8jla_C ! --RT---- ! +8u14_G ! +--------------2 --RG---- ! ! +5x0y_G +-------5 --RA--RA ! +6a5l_g +--------------1 --RG---- +8txv_G |
> 7d69_G:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING GIARDIA HISTONES
----RA---- +1zla_C +--------------4 ----RG---- +---------7 +5x0y_G ! ! ----RG---- ! +--------------8jla_C ! ----RA--RA ! +6a5l_g -12 +----------------------1 ----RG---- ! ! +8txv_G ! ! ----RT---- ! ! +8smw_G ! ! +----------------2 ----RG---- +-11 ! +8ox0_C ! +--8 ----RT---- ! ! ! +----------8u14_G ! ! +-----6 --LCRT---- ! ! +----------8hr1_E +-10 ----RG--RG ! +-----8kcb_A ! +------------5 ------RA-- ! ! +-----6g0l_D +-9 LC-------- ! +8bvw_e +------------------3 ----RT---- +8grq_A |
> 7dbh_A:THE MOUSE NUCLEOSOME STRUCTURE CONTAINING H3MM18
--RT---- +-----------------------------8grq_A +-8 LCRT---- ! +-----------------------------8hr1_E ! --RA--RA ! +6a5l_g ! +--------------1 --RG---- --9 +--------4 +8txv_G ! ! ! --RG---- ! +--6 +--------------8jla_C ! ! ! --RT---- ! ! ! +---------8u14_G ! ! +-------------3 ----RA-- +--7 +---------6g0l_D ! --RA---- ! +1zla_C ! +--------------2 --RG---- +-----------5 +8ox0_C ! --RG---- +--------------5x0y_G |
> 7dvv_A:HEME SENSOR PROTEIN PEFR FROM STREPTOCOCCUS AGALACTIAE BOUND TO OPERATOR DNA (28-MER)
----RGSTRTSTHG--------RA---- L +-----------------------------3zpl_B +-1 --DCLT--AGTTRG----RG--RA---- L +-2 +-----------------------------5h3r_A ! ! TT----KATTQTTG--LTRTKA--FTYT L +-3 +-----------------------------2p7c_B ! ! ----------------YG---------- --4 +-----------------------------3eyi_B ! ----------NCTTNAVTNT-------- L +-----------------------------1pp7_U |
> 7e8d_H:NSD2 E1099K MUTANT BOUND TO NUCLEOSOME
----RA-- +-----------------------------6g0l_D ! RT------ ! +----9fgq_D ! +-------------3 --RG---- ! +-7 +----5x0y_G ! ! ! --RT---- ! ! +------------------8grq_A -10 ! --RA---- ! ! +1zla_C ! +---8 +-------------2 --RA--RA ! ! ! ! +6a5l_g ! ! ! +-5 --RG---- ! ! ! ! ! +8txv_G ! ! +-----6 +--------------1 --RG---- +----9 ! +8ox0_C ! ! --RG---- ! +--------------8jla_C ! --RT---- ! +-----------8u14_G +------------4 --RT---- +-----------8hr1_E |
> 7e9c_A:CRYO-EM STRUCTURE OF THE 1:1 ORC1 BAH DOMAIN IN COMPLEX WITH NUCLEOSOME
RG--RT---- +-----------------------------8grq_A ! RG-------- ! +8jh2_e ! +---------------------3 RGLCRT---- ! ! +8hr1_E ! ! ----RA---- ! ! +------8rbx_M -11 +-9 +-------------5 ----RG---- ! ! ! ! +------5x0y_G ! ! ! ! ----RG---- ! ! ! ! +8txv_G ! ! +-8 +-1 ----RA---- ! ! ! +---------2 +1zla_C ! ! ! ! ! ----RG---- +----10 ! +------6 +8ox0_C ! ! ! ! ----RA--RA ! +---7 +---------6a5l_g ! ! ------RA-- ! +----------------6g0l_D ! ----RT---- ! +8u14_G +----------------------4 ----RG---- +8jla_C |
> 7e9c_D:CRYO-EM STRUCTURE OF THE 1:1 ORC1 BAH DOMAIN IN COMPLEX WITH NUCLEOSOME
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +--------4 ----RG---- ! ! +----5x0y_G ! ! ----RT---- ! +-----6 +8u14_G ! ! ! +-1 ----RA---- -10 ! ! +----------3 +1zla_C ! ! ! ! ! ----RG---- ! +-7 +--5 +8ox0_C ! ! ! ! ----RG---- ! ! ! +----------8jla_C ! +-8 ! --LCRT---- ! ! ! +-------------------8hr1_E ! ! ! ----RT---- +------9 +---------------------8grq_A ! ----RA--RA ! +6a5l_g +----------------------2 ----RG---- +8txv_G |
> 7e9c_G:CRYO-EM STRUCTURE OF THE 1:1 ORC1 BAH DOMAIN IN COMPLEX WITH NUCLEOSOME
--RA---- +1zla_C +-------------------4 --RG---- ! +8ox0_C +--9 --RA--RA ! ! +6a5l_g ! ! +--------------1 --RG---- ! +----6 +8txv_G ! ! --RG---- +-10 +--------------8jla_C ! ! --RC---- ! ! +---6qld_f ! ! +------------5 ----RA-- ! ! ! +---6g0l_D ! +-----8 --RA---- -11 ! +7xsx_a ! ! +--------------3 --RT---- ! +-7 +8grq_A ! ! LCRT---- ! +--------------8hr1_E ! --RT---- ! +8u14_G +-----------------------2 --RG---- +5x0y_G |
> 7ea5_E:YEAST SET2 BOUND TO A NUCLEOSOME CONTAINING ONCOHISTONE MUTATIONS
RG--RT---- +-----------------------------8grq_A ! RG-------- ! +8jh2_e ! +------------------3 RGLCRT---- ! +--5 +8hr1_E ! ! ! ------RA-- ! +-6 +-------------------6g0l_D -10 ! ! ----RG---- ! +-7 +----------------------8jla_C ! ! ! ----RG---- ! ! +------------------------8ox0_C ! +-8 ----RT---- ! ! ! +8u14_G ! ! ! +--------------1 ----RG---- ! ! +-----------4 +5x0y_G +-9 ! ----RA---- ! +--------------1zla_C ! ----RA--RA ! +6a5l_g +----------------------------2 ----RG---- +8txv_G |
> 7ea5_H:YEAST SET2 BOUND TO A NUCLEOSOME CONTAINING ONCOHISTONE MUTATIONS
----RA-- +-----------------------------6g0l_D +-8 --RG---- ! +-----------------------------8jla_C ! --RA---- ! +1zla_C ! +--------------3 --RG---- ! ! +8ox0_C --9 +-----4 --RT---- ! ! ! +8u14_G ! +-5 +--------------1 --RG---- ! ! ! +5x0y_G ! ! ! LCRT---- ! ! +--------------------8hr1_E +-------7 --RA--RA ! +6a5l_g ! +--------------------2 --RG---- +-6 +8txv_G ! --RT---- +--------------------8grq_A |
> 7ea8_A:HUMAN SETD2 BOUND TO A NUCLEOSOME CONTAINING ONCOHISTONE MUTATIONS
--RG--------RG------ +--------------6iy2_A +--------10 --RG--------RT------ ! ! +7zs9_e ! +--------------1 --RG--------RT------ ! +8grq_A ! --RG---------------- ! +--------------------5z3u_A ! +-17 --RT----LA--RG------ ! ! ! +---------------7unc_a ! ! +---11 HARA----LT--RC------ +--21 ! ! +3kwq_E ! ! ! +--------------3 --RG----LC--RT------ ! ! ! +8hr1_E ! ! ! --RT--RG------------ ! ! ! +--------------------6pww_K ! ! ! ! HARAYT--LT--RC------ ! ! ! ! +-------------------4xzq_E ! ! ! ! ! --RCYA------RG------ ! ! ! +-18 ! +---------7ccr_A ! +-20 ! ! ! +--------9 ------------RG------ ! ! ! ! ! ! +---------8ox0_C ! ! ! ! ! ! --------LT---------- ! ! ! ! ! ! +------7ywx_E ! ! ! +-16 +-14 +----------8 ------------RG------ ! ! ! ! ! ! ! +------5x0y_G ! ! ! ! ! ! ! ------------RC------ ! ! ! ! ! ! ! +7xyf_B -22 ! ! ! ! ! ! +-5 ----------------KG-- ! ! ! ! ! +-13 +----6 +7nkx_f ! ! ! ! ! ! ! ! ------------RG------ ! +-19 ! ! ! +--------7 +-8jla_C ! ! +-15 ! ! ! ------------RA------ ! ! ! ! ! ! +1zla_C ! ! ! +-12 +-----4 ------------RA----RA ! ! ! ! +6a5l_g ! ! ! ! ----------IT-------- ! ! ! ! +3wkj_D ! ! ! +---------------2 --------------RA---- ! ! ! +6g0l_D ! ! ! --------EA----RG---- ! ! +------------------7n8n_A ! ! HGRGYG--QC--RG------ ! +---------------------7y7i_E ! ------------RT------ +----------------------------7kbd_C |
> 7eg6_A:SNF5 FINGER HELIX BOUND TO THE NUCLEOSOME
RG-------- +8jh2_e +--------------3 RG--RT---- +-------6 +8grq_A ! ! RGLCRT---- +-8 +--------------8hr1_E ! ! ------RA-- +-9 +----------------------6g0l_D ! ! ----RG---- ! +------------------------8jla_C ! ----RA---- ! +1zla_C -10 +--------------4 ----RG---- ! ! +5x0y_G ! +------5 ----RT---- ! ! ! +8u14_G ! ! +--------------1 ----RG---- +---7 +8ox0_C ! ----RA--RA ! +6a5l_g +---------------------2 ----RG---- +8txv_G |
> 7egp_S:THE STRUCTURE OF SWI/SNF-NUCLEOSOME COMPLEX
LC------ +8bvw_e +--------------1 --RT---- ! +8grq_A +----11 LARG---- ! ! +7unc_a ! +-------------5 LCRT---- ! +8hr1_E ! --RA---- ! +--7xsx_a ! +-----7 ----RA-- ! ! +--6g0l_D ! +-8 --RC---- -13 ! ! +-6qld_f ! ! +------6 --RT---- ! ! ! +8u14_G ! +--9 +-2 --RG---- ! ! ! +5x0y_G ! ! ! --RG---- ! +-10 ! +8txv_G ! ! ! +---------4 --RG---- ! ! ! +8jla_C +--12 ! --RA--RA ! +-------------6a5l_g ! --RA---- ! +1zla_C +---------------3 --RG---- +8ox0_C |
> 7el3_B:CRYSTAL STRUCTURE OF HPAR-DNA COMPLEX FROM ACINETOBACTER BAUMANNII
--ET--RGTCTGSTRG--KT-- L +6q2b_B +-----------------------------1 VT--HTPTSA--TTKG----YT L +-2 +9c4c_G ! ! ------RGTCTA--RGNTRT-- L --3 +-----------------------------4fx4_B ! ----ITRGECSCSGKG------ L +-----------------------------5i2d_R |
> 7jps_D:ORC-DNA: HUMAN ORIGIN RECOGNITION COMPLEX (ORC) WITH DNA BOUND IN THE CORE
RT--LANTHGTTETYTRG---------------- L +-----------------------------1f4k_B +-2 --TT------KATTQTTG--LTRT----KAFTYT L ! +-----------------------------2p7c_B +-3 --------------NASTRGHT--STLT------ L ! ! +------7cby_C --4 +----------------------1 --------------NASTRTHT--ST-------- L ! +------3l2c_A ! --------------------YG------------ +-----------------------------3eyi_B |
> 7jzv_N:CRYO-EM STRUCTURE OF THE BRCA1-UBCH5C/BARD1 E3-E2 MODULE BOUND TO A NUCLEOSOME
----RT---- +8u14_G +-------------------1 ----RG---- ! +5x0y_G ! ----RA---- ! +1zla_C +--14 +-------------6 ----RG---- ! ! ! +8jla_C ! ! +--11 ----RT---- ! ! ! ! +8smw_G ! ! ! +--------------3 ----RG---- ! +-13 +8ox0_C ! ! ----RA--RA ! ! +6a5l_g -15 +------------------2 ----RG---- ! +8txv_G ! ----RG--RG ! +-------8kcb_A ! +---------9 --LARG---- ! ! ! +7unc_a ! ! +------5 LC--RT---- ! ! +8hr1_E ! ! ----RC---- +----12 +---6qld_f ! +-7 ------RA-- ! +-----8 +---6g0l_D ! ! ! LC-------- +----10 +-----8bvw_e ! ----RA---- ! +7xsx_a +-----------4 ----RT---- +8grq_A |
> 7k5x_H:CRYO-EM STRUCTURE OF A CHROMATOSOME CONTAINING HUMAN LINKER HISTONE H1.0
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------3 ----RG---- ! ! +----5x0y_G -10 +-------6 ----RA---- ! ! ! +1zla_C ! ! ! +---------------2 ----RG---- ! ! +-5 +8ox0_C ! ! ! ----RG---- ! ! +---------------8jla_C +---9 ----RA--RA ! +6a5l_g ! +--------------------1 ----RG---- ! +--7 +8txv_G ! ! ! ----RT---- +-8 +--------------------8grq_A ! ----RT---- ! +-----------8u14_G +-----------4 --LCRT---- +-----------8hr1_E |
> 7k60_H:CRYO-EM STRUCTURE OF A CHROMATOSOME CONTAINING HUMAN LINKER HISTONE H1.10
------RA-- +-----------------------------6g0l_D ! RT-------- ! +-----9fgq_D ! +-----3 ----RA---- ! ! ! +1zla_C ! +------5 +-----2 ----RG---- -10 ! ! +8ox0_C ! ! ! ----RA--RA ! ! +-----------6a5l_g ! +----7 ----RG---- ! ! ! +8txv_G ! ! ! +--------------1 ----RG---- ! ! +---6 +5x0y_G +-----9 ! ----RG---- ! +--------------8jla_C ! ----RT---- ! +-----------8u14_G ! +--------4 --LCRT---- +--8 +-----------8hr1_E ! ----RT---- +--------------------8grq_A |
> 7k63_H:CRYO-EM STRUCTURE OF A CHROMATOSOME CONTAINING CHIMERIC LINKER HISTONE GH1.10-NCH1.4
------RA-- +-----------------------------6g0l_D ! RT-------- ! +-----9fgq_D ! +------4 ----RA---- ! ! ! +1zla_C ! +------5 +-----3 ----RG---- ! ! ! +8ox0_C -10 ! ! ----RG---- ! +-6 +------------8jla_C ! ! ! ----RT---- ! ! ! +8u14_G ! +-7 +-------------------1 ----RG---- ! ! ! +5x0y_G ! ! ! ----RT---- +-------9 +-------------------8grq_A ! ----RA--RA ! +6a5l_g ! +--------------------2 ----RG---- +-8 +8txv_G ! --LCRT---- +--------------------8hr1_E |
> 7k6p_A:ACTIVE STATE DOT1 BOUND TO THE UNACETYLATED H4 NUCLEOSOME
RG-------- +8jh2_e +--------------3 RG--RT---- +-------6 +8grq_A ! ! RGLCRT---- +-7 +--------------8hr1_E ! ! ------RA-- +-8 +----------------------6g0l_D ! ! ----RG---- ! +------------------------8ox0_C ! ----RA--RA -10 +6a5l_g ! +-------------------------2 ----RG---- ! ! +8txv_G ! ! ----RA---- +-9 +1zla_C ! +-------------4 ----RG---- ! ! +8jla_C +----------5 ----RT---- ! +8u14_G +--------------1 ----RG---- +5x0y_G |
> 7k6p_D:ACTIVE STATE DOT1 BOUND TO THE UNACETYLATED H4 NUCLEOSOME
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------3 ----RG---- ! ! +----5x0y_G ! +-----6 ----RA---- ! ! ! +1zla_C -10 ! ! +---------------2 ----RG---- ! ! +-5 +8ox0_C ! ! ! ----RG---- ! +-8 +---------------8jla_C ! ! ! ----RA--RA ! ! ! +6a5l_g ! ! ! +--------------------1 ----RG---- +----9 +--7 +8txv_G ! ! ----RT---- ! +--------------------8grq_A ! ----RT---- ! +-----------8u14_G +------------4 --LCRT---- +-----------8hr1_E |
> 7k78_E:ANTIBODY AND NUCLEOSOME COMPLEX
LCRT---- +-----------------------------8hr1_E +-5 --RT---- +-6 +-----------------------------8grq_A ! ! ----RA-- +-7 +-----------------------------6g0l_D ! ! --RG---- +-8 +-----------------------------8ox0_C ! ! --RG---- ! +-----------------------------5x0y_G ! --RG---- ! +8txv_G --9 +--------------1 --RA---- ! +----2 +1zla_C ! ! ! --RT---- ! +--3 +--------------8u14_G ! ! ! --RG---- +------4 +-------------------8jla_C ! --RA--RA +----------------------6a5l_g |
> 7kbd_C:NUCLEOSOME IN INTERPHASE CHROMOSOME FORMED IN XENOPUS EGG EXTRACT (OLIGO FRACTION)
RA---- +1zla_C +-------------4 RA--RA ! +6a5l_g ! RG---- +----7 +8txv_G ! ! +--------------1 RG---- ! ! ! +5x0y_G ! +-6 RT---- +-9 ! +8u14_G ! ! +--------------2 RG---- ! ! +8ox0_C ! ! RT---- +-10 ! +8smw_G ! ! +-------------------3 RG---- ! ! +8jla_C ! ! RT---- -11 +--------------------8grq_A ! RG--RG ! +------8kcb_A ! +-----------5 --RA-- +---8 +------6g0l_D ! RT---- +------------------8hr1_E |
> 7ktq_D:NUCLEOSOME FROM A DIMERIC PRC2 BOUND TO A NUCLEOSOME
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------4 ----RG---- ! ! +----5x0y_G ! +-5 ----RA---- -10 ! ! +1zla_C ! +--6 +----------------3 ----RG---- ! ! ! +8jla_C ! ! ! ----RT---- ! ! +-------------------8grq_A ! ! ----RT---- +------9 +8u14_G ! +--------------------1 ----RG---- ! +-7 +8ox0_C ! ! ! --LCRT---- +-8 +--------------------8hr1_E ! ----RA--RA ! +6a5l_g +---------------------2 ----RG---- +8txv_G |
> 7ktq_E:NUCLEOSOME FROM A DIMERIC PRC2 BOUND TO A NUCLEOSOME
RG--RT---- +-----------------------------8grq_A ! RG-------- ! +8jh2_e ! +------------------3 RGLCRT---- ! +-8 +8hr1_E ! ! ! ----RG---- -11 ! +-------------------8jla_C ! +--9 ----RA---- ! ! ! +1zla_C ! ! ! +--------------1 ----RG---- ! ! +----7 +8ox0_C ! ! ! ----RG---- ! ! +--------------5x0y_G +-----10 ----RA---- ! +--7xsx_a ! +---4 ------RA-- ! +-----5 +--6g0l_D ! ! ! ----RT---- +---------6 +------8u14_G ! ----RG---- ! +8txv_G +------------2 ----RA--RA +6a5l_g |
> 7lbx_A:CRYSTAL STRUCTURE OF TFAM (MITOCHONDRIAL TRANSCRIPTION FACTOR A) IN COMPLEX WITH LSP
--STYGLCSGLAKTTGTCIGMGKGRTYANTVTFGPGQCLC L +---------------7lbx_A +------1 RCNTFTMA--RAHGNAACST-------------------- L +--2 +---------------4euw_A ! ! RTNTFTMA--RT--NG--SA-------------------- L +-3 +----------------------4y60_C ! ! KCNT--MAMA--EGSAACNT-------------------- L +-4 +-------------------------2lef_A ! ! ------FTCA----IG--AT-------------------- +-5 +--------------------------6oem_H ! ! RGNTFTMA--RT--NGRTSA-------------------- L --6 +---------------------------7m5w_A ! ----YA--------FT--SG-------------------- +---------------------------5ze0_N |
> 7lv8_C:STRUCTURE OF THE MARSEILLEVIRUS NUCLEOSOME
--RT---- +8u14_G +--------------1 --RG---- ! +5x0y_G +-6 --RG---- ! ! +8txv_G +--7 +--------------2 --RG---- ! ! +8ox0_C ! ! --RA--RA ! +--------------6a5l_g +-8 --RT---- ! ! +8smw_G ! ! +----------3 --RA---- +---9 +------5 +1zla_C ! ! ! LCRT---- ! ! +----------8hr1_E ! ! --RG---- -11 +------------------8jla_C ! --RG--RG ! +------8kcb_A ! +-----------4 ----RA-- +--10 +------6g0l_D ! --RT---- +------------------8grq_A |
> 7lv8_D:STRUCTURE OF THE MARSEILLEVIRUS NUCLEOSOME
--RA-- +-----------------------------6g0l_D +-8 RG---- ! +-----------------------------5x0y_G ! RA---- ! +1zla_C --9 +---------------2 RG---- ! +---------4 +8ox0_C ! ! ! RG---- ! ! +---------------8jla_C ! ! RA--RA +---7 +6a5l_g ! +--------------------1 RG---- ! +--5 +8txv_G ! ! ! RT---- +-6 +--------------------8grq_A ! RT---- ! +-----------8u14_G +-----------3 RT---- +-----------8hr1_E |
> 7lv9_A:MARSEILLEVIRUS HETEROTRIMERIC (HEXAMERIC) NUCLEOSOME
LCRT---- +-----------------------------8hr1_E ! LARG---- ! +7unc_a ! +-------------------1 --RT---- ! +-11 +8grq_A -13 ! ! --RG---- ! ! +-------------------8jla_C ! ! LC------ ! ! +-------8bvw_e ! ! +-----7 --RA---- ! ! ! ! +--7xsx_a +-------12 ! +----6 ----RA-- ! ! +--6g0l_D ! +-9 --RC---- ! ! ! +6qld_f ! ! ! +---------5 --RT---- ! ! ! ! ! +8u14_G ! ! ! ! +-3 --RG---- ! ! +--8 +8ox0_C +----10 ! --RA---- ! ! +1zla_C ! +---------4 --RG---- ! +5x0y_G ! --RA--RA ! +6a5l_g +--------------2 --RG---- +8txv_G |
> 7lv9_B:MARSEILLEVIRUS HETEROTRIMERIC (HEXAMERIC) NUCLEOSOME
----RA-- +-----------------------------6g0l_D +-7 --RG---- ! +-----------------------------5x0y_G +-8 --RA--RA ! ! +6a5l_g ! +-----------------------------2 --RG---- ! +8txv_G ! --RT---- ! +8u14_G --9 +-1 --RA---- ! +----------3 +1zla_C ! ! ! --RG---- ! +---------4 +8ox0_C ! ! ! --RG---- ! +----5 +----------8jla_C ! ! ! LCRT---- +---6 +--------------------8hr1_E ! --RT---- +-------------------------8grq_A |
> 7lya_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE WITH LINKED HISTONE PROTEINS H2A AND H2B
--RT---- +8u14_G +--------------1 --RG---- ! +5x0y_G +-6 --RG---- ! ! +8txv_G +--7 +--------------2 --RG---- ! ! +8ox0_C ! ! --RA--RA ! +--------------6a5l_g +-8 --RT---- ! ! +8smw_G ! ! +----------3 --RA---- +---9 +------5 +1zla_C ! ! ! LCRT---- ! ! +----------8hr1_E ! ! --RG---- -11 +------------------8jla_C ! --RG--RG ! +------8kcb_A ! +-----------4 ----RA-- +--10 +------6g0l_D ! --RT---- +------------------8grq_A |
> 7lyb_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE IN COMPLEX WITH BRCA1-BARD1-UBCH5C
--RT---- +8u14_G +--------------1 --RG---- ! +5x0y_G ! --RT---- ! +8smw_G ! +-2 --RA---- +-------13 +---------5 +1zla_C ! ! ! ! --RA--RA ! ! +-10 +6a5l_g ! ! ! ! --RG---- ! ! ! ! +8txv_G ! +-12 +---------3 --RG---- ! ! +8ox0_C ! ! --RG---- -15 +-----------8jla_C ! --RG--RG ! +-------8kcb_A ! +---------9 LARG---- ! ! ! +7unc_a ! ! +------6 LCRT---- ! ! +8hr1_E ! ! --RC---- +----14 +---6qld_f ! +-7 ----RA-- ! +-----8 +---6g0l_D ! ! ! LC------ +----11 +-----8bvw_e ! --RA---- ! +7xsx_a +-----------4 --RT---- +8grq_A |
> 7lyc_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE UBIQUITYLATED AT HISTONE H2A LYS13 AND LYS15 IN COMPLEX WITH BARD1 (RESIDUES 415- 777)
--RT---- +8u14_G +--------------1 --RG---- ! +5x0y_G +-6 --RG---- ! ! +8txv_G +--7 +--------------2 --RG---- ! ! +8ox0_C ! ! --RA--RA ! +--------------6a5l_g +-8 --RT---- ! ! +8smw_G ! ! +----------3 --RA---- +---9 +------5 +1zla_C ! ! ! LCRT---- ! ! +----------8hr1_E ! ! --RG---- -11 +------------------8jla_C ! --RG--RG ! +------8kcb_A ! +-----------4 ----RA-- +--10 +------6g0l_D ! --RT---- +------------------8grq_A |
> 7m1x_C:CRYO-EM STRUCTURE OF NUCLEOSOME CONTAINING MOUSE HISTONE VARIANT H2A.Z
--RG---- +-----------------------------8ox0_C +-9 --RG---- +-10 +-----------------------------8jla_C ! ! --RG---- ! +-----------------------------5x0y_G ! --RT---- ! +8smw_G ! +----------1 --RA---- -11 +-----4 +1zla_C ! ! ! LCRT---- ! +----6 +----------8hr1_E ! ! ! --RG---- ! ! ! +8txv_G ! ! +----------------2 --RA--RA +-------8 +6a5l_g ! --RT---- ! +-----------8u14_G ! +-------5 --RT---- ! ! +-----------8grq_A +-7 --RG--RG ! +------8kcb_A +------------3 ----RA-- +------6g0l_D |
> 7mcs_F:CRYO-ELECTRON MICROSCOPY STRUCTURE OF TNSC(1-503)A225V BOUND TO DNA
----RC-------------- +---------------7mcs_F +----------1 --------RT---------- +-2 +---------------7jk2_A ! ! --TT--RA------------ +-3 +--------------------------7jps_B ! ! FT----------YT------ --4 +---------------------------6qem_L ! ----------MT--RTRTIT L +----------------------------7jy6_F |
> 7n8n_A:MELBOURNEVIRUS NUCLEOSOME LIKE PARTICLE
--------LCRT +-----------------------------8hr1_E +-7 ------RG--RT ! +-----------------------------8grq_A ! RA--RA------ ! +6a5l_g ! +------------1 RG---------- +-8 +--------4 +8txv_G ! ! ! ! --RA-------- ! ! +--5 +------------6g0l_D ! ! ! ! RT---------- ! ! ! ! +8u14_G ! +----6 +---------------------2 RG---------- --9 ! +8ox0_C ! ! RA---------- ! ! +1zla_C ! +-----------------------3 RG---------- ! +8jla_C ! RG---------- +-----------------------------5x0y_G |
> 7n8n_B:MELBOURNEVIRUS NUCLEOSOME LIKE PARTICLE
----RA-- +1zla_C +--------------2 ----RG-- ! +8ox0_C +------4 ----RARA ! ! +6a5l_g +-6 +--------------1 ----RG-- ! ! +8txv_G +-8 ! ----RG-- ! ! +---------------------5x0y_G +-10 ! ----RG-- ! ! +-----------------------8jla_C ! ! --RA---- ! +-------------------------6g0l_D ! RT------ -11 +------------------9fgq_D ! +---5 ----RGRG ! ! ! +-------8kcb_A ! +-7 +----------3 ----RT-- ! ! ! +-------8hr1_E +--9 ! ----RT-- ! +----------------------8smw_G ! ----RT-- +------------------------8u14_G |
> 7nkx_a:RNA POLYMERASE II-SPT4/5-NUCLEOSOME-CHD1 STRUCTURE
LC------ +8bvw_e +--------------------1 --RT---- ! +8grq_A ! --RA---- ! +7xsx_a ! +-2 LARG---- ! +-------------5 +7unc_a ! ! ! LCRT---- -13 +-9 +8hr1_E ! ! ! ----RA-- ! +--10 +-------------6g0l_D ! ! ! --RA---- ! ! ! +1zla_C ! ! +-------------6 --RG---- ! ! +5x0y_G ! ! --RC---- +-12 +6qld_f ! +---------7 --RT---- ! ! ! +8u14_G ! +-------8 +-3 --RG---- ! ! ! +8ox0_C ! ! ! --RG---- +-11 +----------8jla_C ! --RG---- ! +8txv_G +------------------4 --RA--RA +6a5l_g |
> 7nkx_f:RNA POLYMERASE II-SPT4/5-NUCLEOSOME-CHD1 STRUCTURE
--RC---- +-6qld_f +--------------7 --RT---- ! ! +8u14_G ! +-1 --RG---- ! +5x0y_G +-12 --RT---- ! ! +8smw_G ! ! +-------------5 --RA--RA ! ! ! +6a5l_g ! +-10 --RG---- +-13 ! +---------8txv_G ! ! +---9 ----RA-- ! ! +---------6g0l_D ! ! --RA---- ! ! +8rbx_M ! ! +-2 LARG---- +-14 +------------------3 +7unc_a ! ! ! --RT---- ! ! +8grq_A ! ! LC------ ! ! +---8bvw_e ! +-----------------8 --RA---- -15 ! +7xsx_a ! +--6 LCRT---- ! +8hr1_E ! --RA---- ! +1zla_C ! +---------------4 --RG---- +------11 +8ox0_C ! --RG---- +---------------8jla_C |
> 7om3_A:CRYSTAL STRUCTURE OF KOD DNA POLYMERASE IN A BINARY COMPLEX WITH HYPOXANTHINE CONTAINING TEMPLATE
------IT------------------------------------QGQAVT--FTITSAQTIGNGSGYGFT--VAKTLTKARGRCNC L +------------3iay_A +----------1 --------------------------------DG--FA----FG----------------------------WC----KT------ ! +------------2dtu_A --3 PIPIVIIIPGFIKGRINTNTFCQGMGDARAYT--RG--WGDG--------WG---------------------------------- L ! +---------------------2xhb_A +-2 --------------------------RT----------------RC--------------LC--SCYG--FAYA----KA--RG-- L +---------------------8g9l_A |
> 7on1_c:CENP-A NUCLEOSOME IN COMPLEX WITH CENP-C
--RA---- +1zla_C +--------------------4 --RG---- ! +8ox0_C ! --RG---- +--14 +8txv_G ! ! +--------------1 --RG---- ! ! +---10 +5x0y_G ! ! ! ! --RG---- ! +-12 +--------------8jla_C ! ! --RT---- ! ! +8smw_G -15 +-------------------5 --RA--RA ! +6a5l_g ! --RT---- ! +--------------------8u14_G ! ! --RG--RG ! ! +-------8kcb_A ! ! +----8 --RT---- ! ! ! +-------8hr1_E +--13 +----9 --RA---- ! ! ! +7xsx_a ! ! ! +-2 LARG---- ! ! +------------3 +7unc_a ! ! ! --RT---- +-11 +8grq_A ! --RC---- ! +---6qld_f ! +-6 ----RA-- +-----------7 +---6g0l_D ! LC------ +-----8bvw_e |
> 7on1_e:CENP-A NUCLEOSOME IN COMPLEX WITH CENP-C
LARG---- +7unc_a +--------------1 --RT---- ! +8grq_A +----9 LC------ ! ! +8bvw_e +-12 +-------------4 LCRT---- ! ! +8hr1_E ! ! --RA--RA ! +-------------------6a5l_g ! --RA---- ! +--7xsx_a -13 +------6 ----RA-- ! ! +--6g0l_D ! +-----7 --RC---- ! ! ! +6qld_f ! ! +--------5 --RT---- ! ! +8u14_G ! ! --RG---- +---11 +8txv_G ! +--------------2 --RG---- ! ! +5x0y_G ! +-8 --RA---- ! ! ! +1zla_C +-10 +--------------3 --RG---- ! +8ox0_C ! --RG---- +---------------8jla_C |
> 7otq_E:CRYO-EM STRUCTURE OF ALC1/CHD1L BOUND TO A PARYLATED NUCLEOSOME
RG--RT---- +-----------------------------8grq_A ! RG-------- ! +8jh2_e ! +------------------2 RGLCRT---- ! +--3 +8hr1_E ! ! ! ------RA-- ! +-4 +-------------------6g0l_D +-9 ! ! ----RG---- ! ! +-5 +----------------------8ox0_C ! ! ! ! ----RG---- ! ! +-6 +------------------------5x0y_G ! ! ! ! ----RG---- ! ! +-7 +-------------------------8jla_C -10 ! ! ! ----RA---- ! +-8 +--------------------------1zla_C ! ! ----RA--RA ! ! +6a5l_g ! +----------------------------1 ----RG---- ! +8txv_G ! ----RT---- +-----------------------------8u14_G |
> 7pet_H:THE 4X177 NUCLEOSOME ARRAY CONTAINING H1
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------3 ----RG---- -11 +------6 +----5x0y_G ! ! ! ----RG---- ! ! +-----------------8ox0_C ! ! ----RA--RA ! ! +6a5l_g +---10 +------------------------1 ----RG---- ! ! +8txv_G ! ! ----RA---- ! ! +----------1zla_C +-9 +------4 ----RT---- ! ! +----------8grq_A ! +----7 ----RT---- ! ! ! +8smw_G ! ! +-----------------2 ----RG---- +-8 +8jla_C ! ----RT---- ! +-----------8u14_G +----------5 --LCRT---- +-----------8hr1_E |
> 7psx_B:STRUCTURE OF HOXB13 BOUND TO HYDROXYMETHYLATED DNA
RTQTVAQTNA---------- L +8osb_E +--------------1 RT--VTKGNA------KA-- L +-3 +2lkx_A ! ! ----NCICNARGRG------ L +-------4 +--------------4xrm_B ! ! RT--IAQCNA----MG---- L ! ! +---1b72_A +-5 +------------2 RC--IAQCNA----YC---- L ! ! +---3rkq_B --6 ! ----VTCCNA----QA--RT L ! +------------------------8g87_X ! --------------YCFAKC L +-------------------------6pe2_B |
> 7q3o_C:STRUCTURE OF CDX1 BOUND TO HYDROXYMETHYLATED DNA
RT--VTKGNA--KA-- L +-----------------------------2lkx_A ! RTQTVAQTNA------ L ! +8osb_E ! +-1 RT--IAQCNAMG---- L ! +---------2 +1b72_A --6 ! ! ----NCICRG------ L ! +----------3 +--4xrm_B ! ! ! RC--IAQCNAYC---- L ! +-4 +------------3rkq_B ! ! ! ----VTCCNAQA--RT L +---5 +-----------------------8g87_X ! ----------YCFAKC L +-------------------------6pe2_B |
> 7r5s_T:STRUCTURE OF THE HUMAN CCAN BOUND TO ALPHA SATELLITE DNA
----RA-- +-----------------------------6g0l_D +-6 --RG---- +-7 +-----------------------------8jla_C ! ! --RG---- +-8 +-----------------------------5x0y_G ! ! --RG---- ! +-----------------------------8ox0_C ! --RA--RA --9 +6a5l_g ! +------------------------2 --RG---- ! ! +8txv_G ! ! --RT---- +----5 +8u14_G ! +-----------1 --RA---- ! +-----3 +1zla_C ! ! ! LCRT---- +------4 +-----------8hr1_E ! --RT---- +-----------------8grq_A |
> 7r5s_W:STRUCTURE OF THE HUMAN CCAN BOUND TO ALPHA SATELLITE DNA
----RT---- +-----------------------------8grq_A +-9 --LCRT---- ! +-----------------------------8hr1_E ! ----RA---- ! +1zla_C ! +--------------3 ----RG---- -10 +---------5 +8ox0_C ! ! ! ----RG---- ! +-7 +--------------5x0y_G ! ! ! ----RT---- ! ! ! +8u14_G ! ! +-----------------------4 ----RG---- +--8 +8jla_C ! ----RA--RA ! +6a5l_g ! +---------------------1 ----RG---- ! ! +8txv_G +----6 RT-------- ! +9fgq_D +---------------------2 ------RA-- +6g0l_D |
> 7scy_H:NUC147 BOUND TO SINGLE BRCT
----RA-- +-----------------------------6g0l_D ! --RA---- ! +1zla_C ! +-------------3 --RG---- ! ! +5x0y_G ! +-4 --RT---- --9 ! ! +8u14_G ! +------5 +--------------1 --RG---- ! ! ! +8ox0_C ! +-7 ! --RG---- ! ! ! +---------------8jla_C ! ! ! LCRT---- ! ! +----------------------8hr1_E +-----8 --RA--RA ! +6a5l_g ! +--------------------2 --RG---- +--6 +8txv_G ! --RT---- +--------------------8grq_A |
> 7tdw_A:STRUCTURE OF FOXP3-DNA COMPLEX
--------NASTRGHT--STLT-------- L +------7cby_C +--1 --ST----NASTRTHT--ST---------- L +-------2 +------3l2c_A ! ! ------RTSTHG------------RA---- L +-----------3 +---------3zpl_B ! ! TT--KATTQTTG--LTRT----KA--FTYT L --4 +-----------------2p7c_B ! --------------YG-------------- +-----------------------------3eyi_B |
> 7tdx_A:STRUCTURE OF FOXP3-DNA COMPLEX
----------NAST--RGHT--STLT------ L +------7cby_C +--1 --ST------NAST--RTHT--ST-------- L +-------2 +------3l2c_A ! ! ----RGSTRTSTHG------------------ L +-------3 +---------3zpl_B ! ! TT----KATTQTTG----LTRT----KAFTYT L +---4 +-----------------2p7c_B ! ! --------KT--RGAT--RGNT---------- L --5 +-------------------------8smh_F ! ------------------YG------------ +-----------------------------3eyi_B |
> 7tn2_D:COMPOSITE MODEL OF A CHD1-NUCLEOSOME COMPLEX IN THE NUCLEOTIDE-FREE STATE DERIVED FROM 2.3A AND 2.7A CRYO-EM MAPS
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------4 ----RG---- ! ! +----5x0y_G ! +-5 ----RA---- ! ! ! +1zla_C -10 +--6 +-----------------2 ----RG---- ! ! ! +8ox0_C ! ! ! ----RT---- ! ! +-------------------8grq_A ! +-8 ----RT---- ! ! ! +8u14_G ! ! ! +-------------------3 ----RG---- ! ! +-7 +8jla_C +-----9 ! --LCRT---- ! +--------------------8hr1_E ! ----RA--RA ! +6a5l_g +-----------------------1 ----RG---- +8txv_G |
> 7unc_a:POL II-DSIF-SPT6-PAF1C-TFIIS COMPLEX WITH REWRAPPED NUCLEOSOME
RG--RT---- +-----------------------------8grq_A ! RG-------- ! +8jh2_e ! +----------------------4 RGLCRT---- +-11 ! +8hr1_E ! ! ! ----RA---- ! ! ! +--7xsx_a ! ! ! +-------5 ------RA-- ! ! ! ! +--6g0l_D ! +----10 +----6 ----RA---- ! ! ! ! +1zla_C ! ! ! +---------3 ----RA--RA ! ! +-8 +6a5l_g ! ! ! ! ----RT---- -12 ! ! ! +8u14_G ! ! ! +---------------2 ----RG---- ! +------9 +8ox0_C ! ! ----RG---- ! ! +8txv_G ! ! +--------------1 ----RG---- ! +-7 +5x0y_G ! ! ----RG---- ! +--------------8jla_C ! ----RG---- +-----------------------------7e9c_G |
> 7und_e:POL II-DSIF-SPT6-PAF1C-TFIIS-NUCLEOSOME COMPLEX (STALLED AT +38)
RG--RT---- +-----------------------------8grq_A ! RG-------- ! +8jh2_e ! +------------------3 RGLCRT---- ! +--5 +8hr1_E +-9 ! ! ------RA-- ! ! +--6 +-------------------6g0l_D ! ! ! ! ----RG---- ! ! ! +----------------------8jla_C ! ! ! ----RA---- ! +---8 +1zla_C ! ! +--------------2 ----RG---- -10 ! +---------4 +8ox0_C ! ! ! ! ----RG---- ! +-7 +--------------5x0y_G ! ! ----RA--RA ! ! +6a5l_g ! +------------------------1 ----RG---- ! +8txv_G ! ----RT---- +-----------------------------8u14_G |
> 7uv9_E:KDM2A-NUCLEOSOME STRUCTURE STABILIZED BY H3K36C-UNC8015 COVALENT CONJUGATE
--RT---- +-----------------------------8grq_A +-7 LCRT---- +-8 +-----------------------------8hr1_E ! ! ----RA-- ! +-----------------------------6g0l_D ! --RT---- ! +8u14_G ! +--------------1 --RG---- --9 +----3 +5x0y_G ! ! ! --RG---- ! +--4 +--------------8ox0_C ! ! ! --RA---- ! +---5 +-------------------1zla_C ! ! ! --RG---- +--6 +----------------------8jla_C ! --RA--RA ! +6a5l_g +--------------------------2 --RG---- +8txv_G |
> 7ux9_A:ARABIDOPSIS DDM1 BOUND TO NUCLEOSOME (H2A.W, H2B, H3.3, H4, WITH 147 BP DNA)
--RG---- +-----------------------------5x0y_G ! --RA---- ! +1zla_C ! +--------------1 --RG---- ! +---2 +8ox0_C ! ! ! --RA--RA --7 +---3 +--------------6a5l_g ! ! ! ----RA-- ! +--4 +------------------6g0l_D ! ! ! --RG---- ! +-5 +----------------------8jla_C ! ! ! LCRT---- +--6 +-------------------------8hr1_E ! --RT---- +--------------------------8grq_A |
> 7ux9_C:ARABIDOPSIS DDM1 BOUND TO NUCLEOSOME (H2A.W, H2B, H3.3, H4, WITH 147 BP DNA)
----------RA-- +-----------------------------6g0l_D ! --------RA--RA ! +6a5l_g ! +-----------------2 --------RG---- ! ! +8txv_G +-10 ! --------RA---- ! ! +--------8 +7xsx_a ! ! ! ! +-----------------3 --------RT---- ! ! ! ! ! +8grq_A ! ! ! +-7 --------RG---- ! ! ! ! +----------7e9c_G ! +--9 +------5 LC------RT---- ! ! +----------8hr1_E +-11 ! --------RA---- ! ! ! +1zla_C ! ! ! +--------------4 --------RG---- ! ! ! ! +8jla_C ! ! +----------6 --------RT---- -12 ! ! +8u14_G ! ! +---------------1 --------RG---- ! ! +5x0y_G ! ! --------RG---- ! +-----------------------------8ox0_C ! --RAAANA------ +-----------------------------1jfi_B |
> 7uy7_E:TETRAHYMENA CST WITH POLYMERASE ALPHA-PRIMASE
--IT----------------------QGQAVT--FTITIGNGSGYGFT--VAKTLTKARG L +------------3iay_A +----------1 --------------DG--FA----FG------------------------WC----KT-- ! +------------2dtu_A --3 PI--NTNTFC--YT--RG--WGDG--------WG-------------------------- L ! +---------------------2xhb_A +-2 ----------RT--------------RC----------LC--SCYG--FAYA----KA-- L +---------------------8g9l_A |
> 7v5n_B:CRYSTAL STRUCTURE OF FAB FRAGMENT OF BEVACIZUMAB BOUND TO DNA APTAMER
TGTGNGYTNGWGNTTTYTTT--YGHGYTYTWG-- L +-7v5n_B +-1 ------------------------------YA-- +---------------------2 +-3vw3_H ! ! ----SCYA--------YT---------------- L --3 +--2fr4_B ! --------------------ST----------WG +------------------------7v5n_E |
> 7v94_A:CRYO-EM STRUCTURE OF THE CAS12C2-SGRNA-TARGET DNA TERNARY COMPLEX
----NGLGQGQTQA--ECNC-- L +-----------------------------7way_A +-1 --------------------AT L +-2 +-----------------------------6ny2_Y ! ! --------------SC------ --3 +-----------------------------7c7l_A ! LTRT------------------ L +-----------------------------7pla_A |
> 7vdt_B:THE MOTOR-NUCLEOSOME MODULE OF HUMAN CHROMATIN REMODELING PBAF- NUCLEOSOME COMPLEX
--RC---- +6qld_f +---------7 --RT---- ! ! +8u14_G ! +-2 --RG---- +-9 +8ox0_C ! ! --RA--RA ! ! +6a5l_g +-10 +----------1 --RG---- ! ! +8txv_G ! ! --RA---- +-11 ! +1zla_C ! ! +-----------5 --RG---- ! ! +5x0y_G +-12 ! ----RA-- ! ! +---------------6g0l_D ! ! --RG---- ! +------------------8jla_C ! --RA---- -13 +7xsx_a ! +-3 LARG---- ! +---------4 +7unc_a ! ! ! --RT---- +-----------8 +8grq_A ! LC------ ! +8bvw_e +--------6 LCRT---- +8hr1_E |
> 7vo0_N:STREPTOMYCES COELICOLOR ZINC UPTAKE REGULATOR COMPLEXED WITH ZINC AND DNA (TRIMER OF DIMERS)
TT------KATTQTTG----LTRT----KAFTYT L +-----------------------------2p7c_B +-3 --------------------YG------------ ! +-----------------------------3eyi_B +-4 ------------NAST--RTHT--ST-------- L ! ! +---3l2c_A +-5 +-------------------------2 --------------NAST--HT--STLT------ L ! ! +---7cby_C ! ! --VTSARGTA--RT-------------------- L --6 +-----------------------------6za3_B ! ------------QTVA----QTNA---------- L ! +8osb_E +-----------------------------1 --------------VT----KGNA----KA---- L +2lkx_A |
> 7vou_C:THE CRYSTAL STRUCTURE OF HUMAN FORKHEAD BOX PROTEIN IN COMPLEX WITH DNA 1
--------------NAST--RGHT--STLT-------- L +-------7cby_C +-1 --------------NAST--RTHT--ST---------- L +------2 +-------3l2c_A ! ! --------RGSTRTSTHG--------------RA---- L +---3 +---------3zpl_B ! ! RT--LANTHGTTETYTRG-------------------- L +-----4 +----------------1f4k_B ! ! --TT------KATTQTTG----LTRT----KA--FTYT L --5 +--------------------2p7c_B ! ------------KT--RGAT--RGNT------------ L +--------------------------8smh_F |
> 7vox_H:THE CRYSTAL STRUCTURE OF HUMAN FORKHEAD BOX PROTEIN A IN COMPLEX WITH DNA 2
--------------NASTRGHT--STLT---- L +-------7cby_C +-1 ----ST--------NASTRTHT--ST------ L +------2 +-------3l2c_A ! ! --------RGSTRTSTHG------------RA L +---3 +---------3zpl_B ! ! --LA--NTHGTTETYTRG-------------- L --4 +----------------1f4k_B ! TT--------KATTQTTG--LTRT----KA-- L +--------------------2p7c_B |
> 7wlr_B:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING KOMAGATAELLA PASTORIS HISTONES
--RC---- +6qld_f +--------6 --RT---- ! ! +8u14_G ! +-1 --RG---- +-7 +5x0y_G ! ! --RG---- ! ! +8txv_G +---8 +---------2 --RG---- ! ! +8ox0_C ! ! --RA---- +--10 ! +1zla_C ! ! +-----------4 --RA--RA ! ! +6a5l_g ! ! ----RA-- ! +---------------6g0l_D ! LARG---- +--12 +7unc_a ! ! +--------------3 --RT---- ! ! ! +8grq_A ! ! +--9 LC------ ! ! ! ! +8bvw_e -13 +-11 +-------------5 LCRT---- ! ! +8hr1_E ! ! --RA---- ! +-----------------7xsx_a ! --RG---- +-----------------------8jla_C |
> 7wlr_D:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING KOMAGATAELLA PASTORIS HISTONES
----RA-- +----------------------6g0l_D ! --RT---- ! +-------------------8u14_G +-11 ! --RA---- ! ! ! +7xsx_a ! ! ! +-2 LARG---- ! +-10 +--3 +7unc_a ! ! ! ! --RT---- ! ! +----6 +8grq_A ! ! ! ! --RC---- ! +-----------7 +--6qld_f +-12 ! LC------ ! ! ! +8bvw_e ! ! +-------5 LCRT---- ! ! +8hr1_E ! ! --RA---- ! ! +1zla_C ! ! +--------------4 --RG---- -13 ! +----8 +8ox0_C ! ! ! ! --RG---- ! +-----9 +--------------5x0y_G ! ! --RG---- ! +-------------------8jla_C ! --RA--RA ! +6a5l_g +-------------------------1 --RG---- +8txv_G |
> 7wlr_E:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING KOMAGATAELLA PASTORIS HISTONES
RG-------- +8jh2_e +--------------3 RG--RT---- +-------7 +8grq_A ! ! RGLCRT---- +--9 +---------------8hr1_E ! ! ------RA-- ! +-----------------------6g0l_D ! ----RG---- ! +8txv_G ! +-1 ----RA---- -10 +---------2 +1zla_C ! ! ! ----RG---- ! +----5 +8ox0_C ! ! ! ----RG---- ! +-----6 +----------5x0y_G ! ! ! ----RG---- +----8 +---------------8jla_C ! ----RT---- ! +8u14_G +--------------------4 ----RA--RA +6a5l_g |
> 7wlr_G:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING KOMAGATAELLA PASTORIS HISTONES
--RG---- +8txv_G +--------------1 --RG---- ! +5x0y_G +-10 --RT---- ! ! +8smw_G ! +--------------2 --RG---- +---11 +8ox0_C ! ! --RA---- ! ! +1zla_C +---13 +-------------4 --RG---- ! ! +8jla_C ! ! --RA--RA ! +-------------------6a5l_g -15 --RT---- ! +-----------8u14_G ! +--------8 LCRT---- ! ! +-----------8hr1_E ! ! --RG--RG +--14 +-------8kcb_A ! +-----------7 LARG---- ! ! +-------7unc_a ! ! --RC---- +-12 +---6qld_f ! +--5 ----RA-- ! +----6 +---6g0l_D ! ! ! LC------ +-------9 +------8bvw_e ! --RA---- ! +7xsx_a +-----------3 --RT---- +8grq_A |
> 7x74_H:CRYO-EM STRUCTURE OF STREPTOMYCES COELICOLOR TRANSCRIPTION INITIAL COMPLEX WITH TWO ZUR DIMERS
TT------KATTQTTG----LTRT----KA--FTYT L +-----------------------------2p7c_B ! --------------NAST--HT--STLT-------- L +-4 +------7cby_C ! ! +-----------2 ------------NAST--RTHT--ST---------- L ! +----------3 +------3l2c_A +-5 ! ------RGSTRTSTHG--------------RA---- L ! ! +------------------3zpl_B +-6 ! --------------------YG-------------- ! ! +-----------------------------3eyi_B +-7 ! --------------VT----KGNA----KA------ L ! ! +-----------------------------2lkx_A ! ! --------------NC----ICNA--RGRG------ L +-8 +-----------------------------4xrm_B ! ! ------------QTVA----QTNA------------ L ! ! +---8osb_E --9 +-------------------------1 --------------IA----QCNA--YC-------- L ! +---3rkq_B ! --VTSARGTA--RT---------------------- L +-----------------------------6za3_B |
> 7xcr_E:CRYO-EM STRUCTURE OF DOT1L AND H2BK34UB-H3K79NLE NUCLEOSOME 1:1 COMPLEX
RG-------- +8jh2_e +--------------2 RG--RT---- +-------6 +8grq_A ! ! RGLCRT---- +-8 +--------------8hr1_E ! ! ----RG---- ! +----------------------5x0y_G ! ----RA--RA ! +6a5l_g ! +------------1 ----RG---- -10 +--5 +8txv_G ! ! ! ------RA-- ! +-------7 +------------6g0l_D ! ! ! ----RA---- ! ! ! +1zla_C +-9 +---------------3 ----RG---- ! +8ox0_C ! ----RT---- ! +8u14_G +----------------------4 ----RG---- +8jla_C |
> 7xcr_F:CRYO-EM STRUCTURE OF DOT1L AND H2BK34UB-H3K79NLE NUCLEOSOME 1:1 COMPLEX
LCRT---- +-----------------------------8hr1_E ! --RT---- ! +8u14_G ! +-1 --RA---- ! +---------3 +1zla_C ! ! ! --RG---- ! +----4 +8ox0_C --9 ! ! --RA--RA ! +--5 +---------6a5l_g ! ! ! --RG---- ! ! ! +8txv_G ! +---6 +--------------2 --RG---- ! ! ! +5x0y_G ! +---7 ! ----RA-- ! ! ! +-----------------6g0l_D +---8 ! --RT---- ! +---------------------8grq_A ! --RG---- +-------------------------8jla_C |
> 7xd0_F:CRYO-EM STRUCTURE OF H2BK34UB NUCLEOSOME
--RT---- +8smw_G +--------------1 --RG---- +--------6 +5x0y_G ! ! --RG---- ! +--------------8jla_C ! --RA---- ! +---------1zla_C ! +---4 ----RA-- ! ! +---------6g0l_D ! +-5 --RG---- +----10 ! ! +8txv_G ! ! ! +-------------3 --RA--RA ! ! +----7 +6a5l_g ! ! ! ! --RT---- ! ! ! ! +8u14_G ! ! +-8 +---------------2 --RG---- -11 ! ! ! +8ox0_C ! +-9 ! LCRT---- ! ! +--------------------8hr1_E ! ! --RT---- ! +---------------------8grq_A ! --RG--RG +-----------------------------8kcb_A |
> 7xjg_C:CRYO-EM STRUCTURE OF E.COLI RETRON-EC86 IN COMPLEX WITH ITS EFFECTOR AT 2.5 ANGSTROM
--TT------KATTQTTGLTRTKAFTYT L +-----------------------------2p7c_B +-1 ------------------YG-------- +-2 +-----------------------------3eyi_B ! ! RT--LANTHGTTETYTRG---------- L --3 +-----------------------------1f4k_B ! ------DCLT--AGTTRG--RG------ L +-----------------------------5h3r_A |
> 7xsx_a:RNA POLYMERASE II ELONGATION COMPLEX TRANSCRIBING A NUCLEOSOME (EC49)
--RA---- +8rbx_M +-1 LARG---- +------------2 +7unc_a ! ! --RT---- ! +8grq_A +-8 LC------ ! ! +--8bvw_e ! +---------6 --RA---- ! ! +7xsx_a +-9 +--5 LCRT---- ! ! +8hr1_E ! ! --RA---- +-11 ! +1zla_C ! ! +--------------4 --RG---- ! ! +8ox0_C ! ! --RG---- +----12 +--------------5x0y_G ! ! --RA--RA ! ! +6a5l_g ! ! +--------------3 --RG---- +-13 +-10 +8txv_G ! ! ! --RG---- ! ! +--------------8jla_C ! ! ----RA-- -14 ! +-------6g0l_D ! +--------------7 --RC---- ! +-------6qld_f ! --RT---- +------------------------8u14_G |
> 7xyf_B:CRYO-EM STRUCTURE OF FFT3-NUCLEOSOME COMPLEX WITH FFT3 BOUND TO SHL+2 POSITION OF THE NUCLEOSOME
------RC------ +7xyf_B +-6 ----------KG-- +---------7 +7nkx_f ! ! ------RG------ +-8 +-8jla_C ! ! ------RA------ ! ! +1zla_C +--9 +----------5 ------RA----RA ! ! +6a5l_g ! ! ------RG------ +----12 +------------5x0y_G ! ! ------RT------ ! ! +7kbd_C ! +---------------1 ------RG------ +-16 +8ox0_C ! ! IT------------ ! ! +3wkj_D ! ! +-----------------2 --------RA---- ! +--13 +6g0l_D ! ! ----KT-------- L ! +-----------------7cvo_A ! --LT--RC------ ! +3kwq_E +---17 +--------------3 ------RT------ ! ! +-10 +8grq_A ! ! ! ! --LT--RC------ ! ! +-11 +--------------4xzq_E ! ! ! ! ------RG------ ! ! ! ! +7ccr_A +-18 ! +-14 +-------------4 --LC--RT------ ! ! ! ! ! +8hr1_E ! ! +--15 ! --LA--RG------ ! ! ! +-----------------7unc_a -19 ! ! ------RG------ ! ! +-------------------6iy2_A ! ! ------RT------ ! +----------------------------7zs9_e ! ------RG------ +----------------------------7y7i_E |
> 7y7i_E:CHICKEN KNL2 IN COMPLEX WITH THE CENP-A NUCLEOSOME
RG-------- +8jh2_e +---------------3 RG--RT---- +------5 +8grq_A ! ! RGLCRT---- +-6 +---------------8hr1_E ! ! ------RA-- +-7 +----------------------6g0l_D ! ! ----RG---- +-8 +------------------------5x0y_G ! ! ----RG---- ! +-------------------------8jla_C +-9 ----RT---- ! ! +8u14_G ! ! +--------------1 ----RG---- ! +------------4 +8ox0_C -10 ! ----RA---- ! +--------------1zla_C ! ----RA--RA ! +6a5l_g +----------------------------2 ----RG---- +8txv_G |
> 7yqk_E:CRYO-EM STRUCTURE OF GAMMAH2AXK15UB-H4K20ME2 NUCLEOSOME BOUND TO 53BP1
RG-------- +8jh2_e +--------------3 RG--RT---- +--------6 +8grq_A ! ! RGLCRT---- ! +---------------8hr1_E ! ----RA---- +-10 +-------8rbx_M ! ! +----------5 ------RA-- ! ! +---7 +-------6g0l_D ! ! ! ! ----RG---- ! +-8 +------------------8jla_C ! ! ----RA---- -11 ! +1zla_C ! +---------------------4 ----RG---- ! +8ox0_C ! ----RT---- ! +8u14_G ! +----------------------1 ----RG---- ! ! +5x0y_G +--9 ----RA--RA ! +6a5l_g +----------------------2 ----RG---- +8txv_G |
> 7yrd_A:HISTONE METHYLTRANSFERASE
RG--RT---- +-----------------------------8grq_A ! RG-------- ! +8jh2_e ! +----------------------4 RGLCRT---- ! ! +8hr1_E ! ! ----RA---- ! ! +--7xsx_a ! ! +-------------5 ------RA-- -12 +-10 ! +--6g0l_D ! ! ! +-8 ----RA---- ! ! ! ! ! +1zla_C ! ! ! ! +---------------3 ----RA--RA ! ! ! ! +6a5l_g ! ! ! ! ----RG---- ! ! +------9 +8txv_G ! ! ! +--------------1 ----RG---- +-11 ! ! +8ox0_C ! ! +-6 ----RT---- ! ! ! ! +8u14_G ! +-7 +--------------2 ----RG---- ! ! +5x0y_G ! ! ----RG---- ! +--------------8jla_C ! ----RG---- +--------------------------7e9c_G |
> 7ywx_E:STRUCTURE OF THE HUMAN CCAN CENP-A ALPHA-SATELLITE COMPLEX
--RT---- +-----------------------------8grq_A ! LARG---- ! +7unc_a ! +------------------4 LCRT---- ! ! +8hr1_E ! +-11 --RT---- -13 ! ! +8u14_G ! ! ! +--------------1 --RG---- ! ! +----9 +8ox0_C ! ! ! --RG---- ! ! +--------------5x0y_G ! ! LC------ +-------12 +---------8bvw_e ! +---7 --RG---- ! ! +---------8jla_C ! +----8 --RA---- ! ! ! +--7xsx_a ! ! ! +-5 ----RA-- ! ! +--------6 +--6g0l_D ! ! ! --RC---- +-10 +----6qld_f ! --RG---- ! +8txv_G ! +-2 --RA---- +------------------3 +1zla_C ! --RA--RA +6a5l_g |
> 7yz7_A:CRYSTAL STRUCTURE OF THE ZEBRAFISH FOXH1 BOUND TO THE TGTGGATT SITE
------------NAST--RGHT--STLT-------- L +-------7cby_C +-1 ------------NAST--RTHT--ST---------- L +------2 +-------3l2c_A ! ! ----------RTSTHG--------------RA---- L +-------3 +---------3zpl_B ! ! RT--LAHGTTETYTRG-------------------- L +-4 +----------------1f4k_B ! ! --TT----KATTQTTG----LTRT----KA--FTYT L --5 +------------------------2p7c_B ! ----------KT--RGAT--RGNT------------ L +--------------------------8smh_F |
> 7yzb_A:CRYSTAL STRUCTURE OF THE HUMAN FOXH1 BOUND TO THE TGTGGATT SITE
----------NAST--RGHT--STLT---- L +------7cby_C +---1 ----------NAST--RTHT--ST------ L +-------------2 +------3l2c_A ! ! TT----KATTQTTG----LTRT----KAFT L +----3 +----------2p7c_B ! ! --------KT--RGAT--RGNT-------- L +-4 +------------------------8smh_F ! ! ----------NC----ICNA--RGRG---- L --5 +-----------------------------4xrm_B ! --KTHG------------------------ +-----------------------------5hdn_C |
> 7yze_A:CRYSTAL STRUCTURE OF THE HUMAN FOXA2 BOUND TO THE TGTTTACT SITE (FORKHEAD MOTIF GTAAACA)
----------------NASTRGHT--STLT---- L +-------7cby_C +-1 ------ST--------NASTRTHT--ST------ L +------2 +-------3l2c_A ! ! ----------RGSTRTSTHG------------RA L +---3 +---------3zpl_B ! ! RT--LA--NTHGTTETYTRG-------------- L --4 +----------------1f4k_B ! --TT--------KATTQTTG--LTRT----KA-- L +--------------------2p7c_B |
> 7yzg_A:CRYSTAL STRUCTURE OF THE XENOPUS FOXH1 BOUND TO THE TGTGGATT SITE
----------NASTRGHT--STLT-------- L +------7cby_C +--1 ----------NASTRTHT--ST---------- L +------2 +------3l2c_A ! ! ------STRTSTHG------------RA---- L +-------3 +---------3zpl_B ! ! RT--LATTETYTRG------------------ L --4 +----------------1f4k_B ! --TT--KATTQTTG--LTRT----KA--FTYT L +------------------------2p7c_B |
> 7zs9_e:YEAST RNA POLYMERASE II TRANSCRIPTION PRE-INITIATION COMPLEX WITH THE +1 NUCLEOSOME (COMPLEX A)
RG------RT---- +-----------------------------8grq_A ! RG------------ ! +8jh2_e ! +------------------2 RG--LC--RT---- ! +--9 +8hr1_E ! ! ! --------RG---- ! ! +-------------------5x0y_G -13 ! --------RA---- ! +-11 +--7xsx_a ! ! ! +-------------4 ----------RA-- ! ! ! +---7 +--6g0l_D ! ! ! ! ! --------RG---- ! ! +-10 +----------------8ox0_C ! ! ! --------RA---- ! ! ! +1zla_C +---12 +-------------------3 --------RG---- ! +8jla_C ! --RAAANA------ ! +---------------1jfi_B ! +--6 --------RG---- ! ! ! +--------------8txv_G ! ! +-5 --------RG---- +-----8 ! +7e9c_G ! +--------------1 --------RA--RA ! +6a5l_g ! --------RT---- +------------------8u14_G |
> 8a3y_a:STRUCTURE OF MAMMALIAN POL II-DSIF-SPT6-PAF1-TFIIS-HEXASOME ELONGATION COMPLEX
--RT--RG-------------- +6pww_K +---------------1 --RG----------RT------ +------11 +8grq_A ! ! --RG----------RG------ ! +---------------6iy2_A ! --RG----------RT------ ! +--------------7zs9_e ! ! ------------------KG-- ! +-10 +7nkx_f ! ! ! +-------5 --------------RG------ ! ! ! ! +8jla_C ! ! +-----7 --------------RA------ ! +-13 ! +1zla_C ! ! ! +-------4 --------------RG------ ! ! ! +8ox0_C +-19 ! ! --RCYA--------RG------ ! ! +-15 ! +---------7ccr_A ! ! ! ! +-----8 --------------RG------ ! ! ! ! +---------5x0y_G ! ! ! ! --RT----LA----RG------ ! ! +-16 ! +---------7unc_a ! ! ! ! +-------9 --------------RA----RA ! ! ! ! +---------6a5l_g ! ! ! ! ------------IT-------- ! ! +-17 ! +3wkj_D ! ! ! ! +------------------2 ----------------RA---- -20 ! ! ! +6g0l_D ! ! ! ! HGRGYG--QC----RG------ ! +-18 +-------------------7y7i_E ! ! HARA----LT----RC------ ! ! +3kwq_E ! ! +--------------3 --RG----LC----RT------ ! +----12 +8hr1_E ! ! HARAYT--LT----RC------ ! +---------------4xzq_E ! --------------RC------ ! +---7xyf_B ! +-------------6 --------------RT------ +-------14 +---7kbd_C ! ----------KT---------- L +-----------------7cvo_A |
> 8aag_A:H1-BOUND PALINDROMIC NUCLEOSOME, STATE 1
RG--RT---- +-----------------------------8grq_A ! RG-------- ! +8jh2_e ! +------------------2 RGLCRT---- ! +--4 +8hr1_E ! ! ! ------RA-- -10 +-6 +-------------------6g0l_D ! ! ! ----RG---- ! +-7 +----------------------8ox0_C ! ! ! ----RG---- ! +-8 +------------------------8jla_C ! ! ! ----RG---- ! ! +-------------------------5x0y_G +-9 ----RA---- ! +--------------1zla_C ! +----3 ----RG---- ! ! ! +8txv_G +-------5 +--------------1 ----RA--RA ! +6a5l_g ! ----RT---- +-------------------8u14_G |
> 8atf_Q:NUCLEOSOME-BOUND INO80 ATPASE
--RG----------RG------ +------------------6iy2_A ! --RT----LA----RG------ ! +7unc_a +---15 +--------------1 --RG----------RT------ ! ! +-11 +8grq_A ! ! ! ! --RG----------RT------ ! +-12 +--------------7zs9_e ! ! HARA----LT----RC------ ! ! +3kwq_E ! +--------------4 --RG----LC----RT------ ! +8hr1_E ! --RT--RG-------------- ! +---------6pww_K ! +------9 --------------RA----RA ! ! +---------6a5l_g ! ! --RCYA--------RG------ ! ! +---------7ccr_A ! ! +---8 --------------RG------ +---19 +-14 ! +---------5x0y_G ! ! ! ! +-10 ------------------KG-- ! ! ! ! ! ! +7nkx_f ! ! ! ! ! +------------6 --------------RA------ ! ! ! ! ! ! +1zla_C ! ! ! +-13 +-5 --------------RG------ ! ! ! ! +8ox0_C ! ! +-16 ! --------------RC------ ! ! ! ! ! +---7xyf_B ! ! ! ! +-----------7 --------------RT------ ! ! ! ! ! +7kbd_C -20 ! ! ! +---3 --------------RG------ ! ! +-17 ! +8jla_C ! ! ! ! ! ------------IT-------- ! ! ! ! ! +3wkj_D ! ! ! ! +------------------2 ----------------RA---- ! +-18 ! +6g0l_D ! ! ! HARAYT--LT----RC------ ! ! +-------------------4xzq_E ! ! HGRGYG--QC----RG------ ! +---------------------7y7i_E ! ----------KT---------- L +----------------------------7cvo_A |
> 8b4h_A:ISTA TRANSPOSASE CLEAVED DONOR COMPLEX
----------HGDTQGECSCKTET L +-----------------------------8w34_A ! QTVAQTNA---------------- L --3 +8osb_E ! +---1 --IAQCNAMG-------------- L +------------------------2 +1b72_A ! --IAQCNAYC-------------- L +----3rkq_B |
> 8bvw_e:RNA POLYMERASE II PRE-INITIATION COMPLEX WITH THE DISTAL +1 NUCLEOSOME (PIC-NUC18W)
RG------------ +8jh2_e +--------------3 RG------RT---- +-------6 +8grq_A ! ! RG--LC--RT---- +-12 +---------------8hr1_E ! ! --------RG---- ! +-----------------------8jla_C ! --------RA---- ! +--7xsx_a ! +-------------4 ----------RA-- -13 +---8 +--6g0l_D ! ! ! --------RG---- ! ! +----------------8ox0_C ! +-9 --RAAANA------ ! ! ! +---------------1jfi_B ! ! +----7 --------RA--RA ! ! ! +6a5l_g +--11 +---------------2 --------RG---- ! +8txv_G ! --------RA---- ! +--------------------1zla_C ! ! --------RG---- +-10 +7e9c_G ! +--------------1 --------RG---- +-----5 +5x0y_G ! --------RT---- +--------------8u14_G |
> 8byq_e:RNA POLYMERASE II PRE-INITIATION COMPLEX WITH THE PROXIMAL +1 NUCLEOSOME (PIC-NUC10W)
RG-------- +8jh2_e +---------------2 RG--RT---- +------4 +8grq_A ! ! RGLCRT---- +-6 +---------------8hr1_E ! ! ------RA-- +-8 +----------------------6g0l_D ! ! ----RG---- ! +------------------------8ox0_C ! ----RA---- +--9 +1zla_C ! ! +--------------3 ----RG---- ! ! +--------5 +5x0y_G ! ! ! ! ----RG---- ! +-7 +---------------8jla_C -10 ! ----RA--RA ! ! +6a5l_g ! +------------------------1 ----RG---- ! +8txv_G ! ----RT---- +-----------------------------8u14_G |
> 8bzm_E:FOXK1-ELF1-HETERODIMER BOUND TO DNA
--------------NAST--RGHT--STLT------ L +------7cby_C +--1 ----ST--------NAST--RTHT--ST-------- L +-------2 +------3l2c_A ! ! --------RGSTRTSTHG--------------RA-- L +------3 +---------3zpl_B ! ! TT--------KATTQTTG----LTRT----KA--FT L +-4 +-----------------2p7c_B ! ! --LA--NTHGTTETYTRG------------------ L +--5 +------------------------1f4k_B ! ! ------------KT--RGAT--RGNT---------- L --6 +--------------------------8smh_F ! ------------SA------------------RG-- +-----------------------------2xcr_U |
> 8ceo_r:YEAST RNA POLYMERASE II TRANSCRIPTION PRE-INITIATION COMPLEX WITH CORE MEDIATOR AND THE +1 NUCLEOSOME
--RG--------RT------ +-----------------------------8grq_A ! --RG--------RT------ ! +----------------7zs9_e ! +-11 --RT----LA--RG------ ! ! ! +---------7unc_a ! ! +------8 ------------RA------ ! ! ! +1zla_C ! ! +---------4 ------------RG------ ! +-13 +8ox0_C ! ! ! HARA----LT--RC------ ! ! ! +3kwq_E ! ! ! +--------------3 --RG----LC--RT------ ! +-15 +-10 +8hr1_E ! ! ! ! HARAYT--LT--RC------ ! ! ! +--------------4xzq_E -19 ! ! --RG--------RG------ ! ! +-------------------6iy2_A ! +-16 --RCYA------RG------ ! ! ! +--------7ccr_A ! ! ! +--------7 ------------RG------ ! ! ! ! +--------5x0y_G ! ! ! ! ------------RC------ ! ! +-12 +7xyf_B ! ! ! +-5 ----------------KG-- ! ! ! +----------6 +7nkx_f ! +-17 ! ! ! ------------RG------ ! ! ! +----9 +-8jla_C ! ! ! ! ----------IT-------- ! ! ! ! +3wkj_D ! ! ! +------------1 --------------RA---- ! ! ! +6g0l_D +----18 ! --RT--RG------------ ! ! +-------------------6pww_K ! +-14 ------------RT------ ! ! +7kbd_C ! +-------------------2 ------------RA----RA ! +6a5l_g ! HGRGYG--QC--RG------ +-----------------------7y7i_E |
> 8com_A:STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
------RT---- +-----------------------------8grq_A +-11 --LC--RT---- ! +-----------------------------8hr1_E ! ------RA---- ! +--7xsx_a ! +-------5 --------RA-- ! ! +--6g0l_D ! +-----6 ------RA---- -12 ! ! +1zla_C ! ! +----------3 ------RG---- ! +--9 +8ox0_C ! ! ! ------RG---- ! ! ! +8txv_G ! ! ! +--------------1 ------RG---- ! ! +-7 +5x0y_G +--------10 ! ------RG---- ! +--------------8jla_C ! RAAANA------ ! +---------------1jfi_B ! ! ------RG---- +---8 +7e9c_G ! +-2 ------RT---- +---------------4 +8u14_G ! ------RA--RA +6a5l_g |
> 8com_B:STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
--RA---- +1zla_C +--------------1 --RG---- +--2 +8ox0_C ! ! --RA--RA +---3 +--------------6a5l_g ! ! ----RA-- +-4 +-----------------6g0l_D ! ! --RG---- +--5 +---------------------5x0y_G ! ! --RG---- +-6 +-----------------------8jla_C ! ! --RT---- --7 +--------------------------8grq_A ! LCRT---- +--------------------------8hr1_E |
> 8com_C:STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
--------RA--RA +6a5l_g +----------------------2 --------RG---- ! +8txv_G ! --------RG---- ! +7e9c_G ! +-------1 --------RA---- +-----10 ! +1zla_C ! ! +-----------6 --------RT---- ! ! ! ! +8u14_G ! ! ! +-------3 --------RG---- ! ! ! +5x0y_G ! +--9 --------RG--RG ! ! +------8kcb_A ! ! +----------5 ----------RA-- +-11 ! ! +------6g0l_D ! ! +-8 --------RA---- ! ! ! +7xsx_a ! ! ! +--------------4 --------RT---- ! ! +--7 +8grq_A +-12 ! ! LC------RT---- ! ! ! +--------------8hr1_E ! ! ! --------RG---- -13 ! +-----------------------------8jla_C ! ! --------RG---- ! +-----------------------------8ox0_C ! --RAAANA------ +-----------------------------1jfi_B |
> 8com_H:STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
----------RA-- +-----------------------------6g0l_D ! RT------------ ! +-----9fgq_D ! +--------------6 --------RA---- -13 ! ! +1zla_C ! ! +-----5 --------RG---- ! ! +8ox0_C ! ! --RAAANA------ ! ! +-------------1jfi_B +-------12 +---7 ----LC--RT---- ! ! +-------------8hr1_E ! +--9 --------RA---- ! ! ! +7xsx_a ! ! +-----------------4 --------RT---- ! ! +8grq_A +-11 --------RT---- ! +8u14_G ! +------------------2 --------RG---- ! ! +5x0y_G ! ! --------RG---- +-10 +7e9c_G ! +--------------1 --------RG---- ! ! +8jla_C +---8 --------RA--RA ! +6a5l_g +--------------3 --------RG---- +8txv_G |
> 8cww_A:STRUCTURE OF S. CEREVISIAE HOP1 CBR BOUND TO A NUCLEOSOME
RG-------- +8jh2_e +---------------2 RG--RT---- +------6 +8grq_A ! ! RGLCRT---- +--8 +---------------8hr1_E ! ! ------RA-- ! +----------------------6g0l_D ! ----RA---- ! +1zla_C +---9 +-------------3 ----RA--RA ! ! ! +6a5l_g ! ! +--5 ----RG---- ! ! ! ! +8txv_G ! ! ! ! +--------------1 ----RG---- -10 +-------7 +-4 +8ox0_C ! ! ! ----RG---- ! ! +--------------5x0y_G ! ! ----RG---- ! +-----------------8jla_C ! ----RT---- +-----------------------------8u14_G |
> 8d0b_F:HUMAN CST-DNA POLYMERASE ALPHA/PRIMASE PREINITIATION COMPLEX BOUND TO 4XTEL-FOLDBACK TEMPLATE
----IT------------------------------QGQAVT--FTIGNGSGYGFT--VAKTLTKARG-- L +------------3iay_A +--1 ------------------------DG--FA----FG----------------------WC---------- +-------2 +------------2dtu_A ! ! PIVIIIPGFIKGRINTNTFCDAYT--RG--WGDG--------WG-------------------------- L --3 +---------------2xhb_A ! --------------------RT--------------RC--------LC--SCYG--FAYA--------RG L +-----------------------8g9l_A |
> 8d0k_F:HUMAN CST-DNA POLYMERASE ALPHA/PRIMASE PREINITIATION COMPLEX BOUND TO 4XTEL-FOLDBACK TEMPLATE - PRIM2C ADVANCED PIC
----IT------------------------------QGQAVT--FTITIGNGSGYGFT--VAKTLTKARG L +------------3iay_A +--1 ------------------------DG--FA----FG------------------------WC-------- +-------2 +------------2dtu_A ! ! PIVIIIPGFIKGRINTNTFCDAYT--RG--WGDG--------WG-------------------------- L --3 +---------------2xhb_A ! --------------------RT--------------RC----------LC--SCYG--FAYA-------- L +-----------------------8g9l_A |
> 8ejp_B:CRYSTAL STRUCTURE OF THE HOMEODOMAIN OF PLATYPUS SDUX IN COMPLEX WITH DNA CONTAINING 5-BROMOURACIL
RART--VTKGNA--KA L +-----------------------------2lkx_A +-3 --RC--IAQCNAYC-- L ! +-----------------------------3rkq_B +-4 --RT--IAQCNAMG-- L ! ! +----1b72_A ! +------------------------2 --RTQTVAQTNA---- L --5 ! +8osb_E ! +---1 ------NCICNARGRG L ! +4xrm_B ! --RTYTNC--NAKG-- L +-----------------------------8pi8_B |
> 8eml_B:CRYSTAL STRUCTURE OF GSX2 HOMEODOMAIN IN COMPLEX WITH DNA
RT--IAQCNAMG---- L +---1b72_A +-------2 RTQTVAQTNA------ L ! ! +8osb_E +----3 +---1 RT--VTKGNA--KA-- L ! ! +2lkx_A +-------4 ! ----NCICNARGRG-- L ! ! +-----------4xrm_B +-5 ! RC--IAQCNAYC---- L ! ! +----------------3rkq_B --6 ! ----VTCCNAQA--RT L ! +------------------------8g87_X ! ----------YCFAKC L +-------------------------6pe2_B |
> 8g57_E:STRUCTURE OF NUCLEOSOME-BOUND SIRTUIN 6 DEACETYLASE
RG-------- +8jh2_e +--------------3 RG--RT---- +-------6 +8grq_A ! ! RGLCRT---- +--8 +---------------8hr1_E ! ! ------RA-- ! +-----------------------6g0l_D ! ----RT---- ! +8u14_G ! +--------------1 ----RG---- -10 +-----5 +8ox0_C ! ! ! ----RG---- ! +---7 +--------------5x0y_G ! ! ! ----RA---- ! ! ! +-1zla_C +-9 +------------------4 ----RG---- ! +-8jla_C ! ----RA--RA ! +6a5l_g +------------------------2 ----RG---- +8txv_G |
> 8g6q_C:H2AK119UB-MODIFIED NUCLEOSOME UBIQUITIN POSITION 1
------RG------ +-----------------------------8ox0_C ! ------RA------ ! +1zla_C ! +-------------4 ------RA----RA ! +----9 +6a5l_g ! ! ! ------RG------ ! +-------11 +--------------5x0y_G ! ! ! ------RG------ ! ! +-------------------8jla_C ! ! ------RT------ -19 ! +-----------------------7kbd_C ! ! ! ----------KG-- ! ! ! +---7nkx_f ! ! ! +------------5 --LA--RG------ ! ! ! ! ! +7unc_a ! ! ! ! +---2 ------RT------ ! ! +-13 ! +8grq_A ! ! ! ! +--10 --LT--RC------ ! ! ! ! ! ! +3kwq_E ! ! ! ! ! ! +--------------3 LC----RT------ +-18 ! ! ! +-8 +8hr1_E ! ! ! ! ! ------RG------ ! ! +-12 +--------------7ccr_A ! ! ! ------RC------ ! +-14 ! +---7xyf_B ! ! ! ! +------6 ----KT-------- L ! ! ! ! ! +---7cvo_A ! ! ! +---------7 --IT---------- ! ! ! ! +3wkj_D ! +-15 ! +----------1 --------RA---- ! ! ! ! +6g0l_D ! ! ! ! --LT--RC------ ! +-16 ! +------------------------4xzq_E ! ! ! ! ------RT------ ! ! ! +------------------------7zs9_e +-17 ! ------RG------ ! +---------------------------6iy2_A ! ------RG------ +---------------------------7y7i_E |
> 8gpn_C:HUMAN MENIN IN COMPLEX WITH H3K79ME2 NUCLEOSOME
--RT +---------7jzv_N +-------------------2 --RC ! ! +---6qld_f +-3 +-----1 LC-- ! ! +---8bvw_e --4 ! --RT ! +-----------------------------8com_C ! --RT +-----------------------------7on1_e |
> 8grq_H:CRYO-EM STRUCTURE OF BRCA1/BARD1 BOUND TO H2AK127-UBCH5C-UB NUCLEOSOME
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------4 ----RG---- -10 +------6 +----5x0y_G ! ! ! ----RG---- ! ! +-----------------8jla_C ! ! ----RA--RA ! ! +6a5l_g +----9 +--------------------2 ----RG---- ! +-7 +8txv_G ! ! ! ----RT---- ! ! +--------------------8grq_A ! ! ----RT---- +-8 +8u14_G ! +-1 ----RA---- ! +-----------------3 +1zla_C ! ! ! ----RG---- +----5 +8ox0_C ! --LCRT---- +-----------------8hr1_E |
> 8gxq_D:PIC-MEDIATOR IN COMPLEX WITH +1 NUCLEOSOME (T40N) IN MH-BINDING STATE
------------------RA---- +-----------------------------6g0l_D ! --------------IT-------- ! +------------------3wkj_D ! ! ----------RG------------ ! ! +-----------------3x1t_H ! ! ! ----------RT------------ ! +-----18 ! +-----6nj9_H ! ! ! ! +--------8 ----------------RA----RA ! ! ! ! ! +-----6a5l_g ! ! ! ! ! --------------------KG-- ! ! ! ! ! +7nkx_f ! ! +-17 ! +---------6 ----------------RG------ ! ! ! +-13 ! +5x0y_G ! ! ! ! ! +-9 ----------------RC------ ! ! ! ! ! ! ! +7on1_c ! ! ! ! ! ! ! +-1 ----------------RA------ ! ! ! ! ! ! +----------4 +1zla_C ! ! ! ! +-10 ! ----------------RG------ ! ! +-15 ! +8ox0_C ! ! ! ! ----------------RG------ +-24 ! ! ! +3w99_F ! ! ! ! +-----------2 ----------------RG------ ! ! ! ! +8jla_C ! ! ! ! ----------RG------------ ! ! +-21 +----------------7tn2_D ! ! ! ! ----------------RC------ ! ! ! ! +--7xyf_B ! ! ! ! +---------7 ----------------RT------ ! ! ! ! ! +--7kbd_C ! ! ! ! +-11 ------------LA--RG------ ! ! ! ! ! ! +7unc_a ! ! ! ! ! +------------3 ----------------RT------ ! ! ! ! +-12 +8grq_A ! ! ! ! ! ! ----------------RG------ ! ! ! ! ! ! +7ccr_A +-25 ! +-22 ! +-14 +-------------5 ----------------RT------ ! ! ! ! ! ! ! ! +8hr1_E ! ! ! ! ! ! +---16 ! ----------------RC------ ! ! ! ! ! ! ! ! +---------------4xzq_E ! ! ! ! ! ! +-19 ! ----------------RG------ ! ! ! ! ! ! ! ! +-----------------6iy2_A ! ! +-23 ! +-20 ! ----------------RC------ ! ! ! ! ! +----------------------3kwq_E -26 ! ! ! ! ----------------RT------ ! ! ! ! +-----------------------7zs9_e ! ! ! ! ----------------RT------ ! ! ! +---------------------------5z23_C ! ! ! ----------------RG------ ! ! +----------------------------7y7i_E ! ! NTATATSTRG-------------- L ! +-----------------------------1dh3_C ! ------------------RG---- +-----------------------------7n8n_A |
> 8gxs_D:PIC-MEDIATOR IN COMPLEX WITH +1 NUCLEOSOME (T40N) IN H-BINDING STATE
------------------RA---- +-----------------------------6g0l_D ! --------------IT-------- ! +------------------3wkj_D ! ! ----------RG------------ ! ! +-----------------3x1t_H ! ! ! ----------RT------------ ! +-----18 ! +-----6nj9_H ! ! ! ! +-----8 ----------------RA----RA ! ! ! ! ! +-----6a5l_g ! ! ! ! +---9 --------------------KG-- ! ! +-17 ! ! +7nkx_f ! ! ! ! +----------6 ----------------RA------ ! ! ! +-13 ! +1zla_C ! ! ! ! ! +-4 ----------------RG------ ! ! ! ! ! +8ox0_C ! ! ! ! ! ----------RG------------ ! ! +-15 +---------------7tn2_D ! ! ! ----------------RC------ ! ! ! +7on1_c ! ! ! +--------------1 ----------------RG------ +-24 ! ! ! +5x0y_G ! ! ! +-12 ----------------RG------ ! ! ! ! +3w99_F ! ! ! +--------------2 ----------------RG------ ! ! +-21 +8jla_C ! ! ! ! ----------------RC------ ! ! ! ! +--7xyf_B ! ! ! ! +---------7 ----------------RT------ ! ! ! ! ! +--7kbd_C ! ! ! ! +-10 ----------------RG------ ! ! ! ! ! ! +7ccr_A ! ! ! ! ! +------------5 ----------------RT------ ! ! ! ! +-11 +8hr1_E ! ! ! ! ! ! ----------------RT------ ! ! ! ! ! ! +7zs9_e -25 ! +-22 ! +-14 +-------------3 ----------------RT------ ! ! ! ! ! ! ! +8grq_A ! ! ! ! ! +---16 ! ------------LA--RG------ ! ! ! ! ! ! ! +---------------7unc_a ! ! ! ! ! +-19 ! ----------------RG------ ! ! ! ! ! ! ! +-----------------6iy2_A ! +-23 ! +-20 ! ----------------RC------ ! ! ! ! +----------------------3kwq_E ! ! ! ! ----------------RC------ ! ! ! +-----------------------4xzq_E ! ! ! ----------------RT------ ! ! +---------------------------5z23_C ! ! ----------------RG------ ! +----------------------------7y7i_E ! NTATATSTRG-------------- L +-----------------------------1dh3_C |
> 8h0v_h:RNA POLYMERASE II TRANSCRIBING A CHROMATOSOME (TYPE I)
----RA-- +-----------------------------6g0l_D ! RT------ ! +----9fgq_D ! +-------4 --RA---- ! ! ! +1zla_C ! +--5 +---3 --RG---- ! ! ! +5x0y_G ! ! ! --RG---- -10 +-6 +------------8jla_C ! ! ! --RA--RA ! ! ! +6a5l_g ! +-7 +---------------1 --RG---- ! ! ! +8txv_G ! ! ! --RT---- ! +-8 ! +8u14_G ! ! ! +-----------------2 --RG---- ! ! ! +8ox0_C +-------9 ! --RT---- ! +-------------------8grq_A ! --RT---- +---------------------8hr1_E |
> 8h7a_A:CRYSTAL STRUCTURE OF THE DIMER FORM KAT6A WH DOMAIN WITH ITS BOUND DOUBLE STRANDED DNA
TTKATTQTTG--LTRT----KAFTYT L +-----------------------------2p7c_B +-2 ------------YG------------ ! +-----------------------------3eyi_B --3 ------NASTRGHT--STLT------ L ! +------7cby_C +----------------------1 ------NASTRTHT--ST-------- L +------3l2c_A |
> 8he5_a:RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH RAD26 AND ELF1, STALLED AT SHL(-3.5) OF THE NUCLEOSOME
RG------------ +8jh2_e +--------------1 RG------RT---- +-------7 +8grq_A ! ! RG--LC--RT---- +-11 +---------------8hr1_E ! ! --------RG---- ! +-----------------------8ox0_C ! --------RA---- ! +--7xsx_a ! +--------4 ----------RA-- ! ! +--6g0l_D ! +-5 --------RA---- ! ! ! +1zla_C -13 ! +----------3 --------RA--RA ! +-6 +6a5l_g ! ! ! --------RG---- ! ! ! +8txv_G ! +-----9 +------------2 --------RG---- ! ! ! +8jla_C ! +-10 ! --------RT---- ! ! ! +---------------8u14_G ! ! ! --------RG---- +-12 +---------------------5x0y_G ! --RAAANA------ ! +---------------1jfi_B +-------8 --------RG---- +---------------7e9c_G |
> 8hr1_F:CRYO-EM STRUCTURE OF SSX1 BOUND TO THE UNMODIFIED NUCLEOSOME AT A RESOLUTION OF 3.02 ANGSTROM
RAAANA------ +----------1jfi_B +---------7 ------RA---- ! ! +--7xsx_a ! +-------5 --------RA-- ! +--6g0l_D ! ------RG---- ! +7e9c_G ! +--------------1 ------RG---- +-10 ! +8jla_C ! ! ! ------RT---- ! ! +--8 +8u14_G ! ! ! ! +-2 ------RA---- ! ! ! ! +----------4 +1zla_C ! ! ! ! ! ! ------RG---- ! +--9 +---6 +8ox0_C +-11 ! ! ------RA--RA ! ! ! +----------6a5l_g ! ! ! ------RG---- ! ! ! +8txv_G -12 ! +-----------------3 ------RG---- ! ! +5x0y_G ! ! --LC--RT---- ! +---------------------8hr1_E ! ------RT---- +-----------------------8grq_A |
> 8ik5_C:TRANSCRIPTION FACTOR LMX1A HOMEOBOX DOMAIN IN COMPLEX WITH WNT1 PROMOTER
RART------------VTKGNA------KA L +-----------------------------2lkx_A ! --RT----------QTVAQTNA-------- L ! +8osb_E +-4 +-1 --RT------------IAQCNA----MG-- L ! ! +-----------------2 +1b72_A ! ! ! ! ----------------NCICNARGRG---- L --5 +--------3 +--4xrm_B ! ! --RC------------IAQCNA----YC-- L ! +--------------------3rkq_B ! ----AALAITHTKT---------------- +-----------------------------2ofi_A |
> 8ity_O:HUMAN RNA POLYMERASE III PRE-INITIATION COMPLEX CLOSED DNA 1
TTKATTQTTGLTRTKAFTYT---------------- L +-----------------------------2p7c_B +-1 ----------YG------------------------ +-2 +-----------------------------3eyi_B ! ! ----------------------RGSTRTSTHG--RA L --3 +-----------------------------3zpl_B ! --------------------DCLT--AGTTRGRGRA L +-----------------------------5h3r_A |
> 8j91_C:CRYO-EM STRUCTURE OF NUCLEOSOME CONTAINING ARABIDOPSIS THALIANA HISTONES
----RG------ +-----------------------------8ox0_C ! ----RC------ ! +7on1_c ! +-----------1 ----RA----RA ! +------8 +6a5l_g ! ! ! ------RA---- ! ! +-----------6g0l_D ! +-------13 ----RA------ ! ! ! +1zla_C ! ! ! +-------------6 ----RG------ ! ! ! ! +8jla_C -20 ! +--11 ----RT------ ! ! ! +7kbd_C ! ! +--------------2 ----RG------ ! ! +5x0y_G ! ! ----RC------ ! ! +7xyf_B ! ! +--5 --------KG-- ! ! +--------7 +7nkx_f ! ! ! ! LA--RG------ ! ! +-9 +---7unc_a ! ! ! ! ----RT------ +-19 ! ! +7zs9_e ! +--10 +------------3 ----RT------ ! ! ! +8grq_A ! ! ! ----RG------ ! +-------12 ! +7ccr_A ! ! ! +-------------4 LC--RT------ ! ! ! +8hr1_E ! +-14 ! LT--RC------ ! ! ! +-----------------3kwq_E ! +-15 ! IT---------- ! ! ! +--------------------------3wkj_D ! +-16 ! ----RG------ ! ! ! +--------------------------6iy2_A ! +-17 ! --KT-------- L ! ! ! +--------------------------7cvo_A +-18 ! LT--RC------ ! +---------------------------4xzq_E ! ----RG------ +---------------------------7y7i_E |
> 8j9v_A:CRYO-EM STRUCTURE OF THE AFRICAN SWINE FEVER VIRUS TOPOISOMERASE 2 COMPLEXED WITH CUT02ADNA AND ETOPOSIDE (EDI-1)
KA--SA------------RGIG------------------------------ +-----------------------------2xcr_U +-1 --RCST--------------IA------------------------------ +-2 +-----------------------------3ksb_B ! ! ----------------------DGICLGWGQGKTLTKGFGFG---------- L +-3 +-----------------------------4y0f_A ! ! ------------------------------------------NTATATSTRG L --4 +-----------------------------1dh3_C ! ------NASTRGHTSTLT---------------------------------- L +-----------------------------7cby_C |
> 8jcc_D:HUMAN HISTONE H2B VARIANT H2BFWT CRYO-EM STRUCTURE WITH 601 DNA SEQUENCE
------RA---- +-----------------------------6g0l_D ! IT---------- ! +------3wkj_D ! +---7 ----RG------ ! ! +------5x0y_G ! +-----9 ----RA------ ! ! ! +1zla_C ! +---12 +---------4 ----RA----RA ! ! ! +6a5l_g ! ! ! ----RG------ ! +----15 +----------------8jla_C ! ! ! ----RT------ ! ! ! +7kbd_C ! ! +---------------------1 ----RG------ -19 ! +8ox0_C ! ! --------KG-- ! ! +---7nkx_f ! ! +-----------------5 ----RG------ ! ! ! +---7unc_a ! ! ! ----RC------ ! +-17 ! +---7xyf_B ! ! ! ! +-----6 ----RG------ ! ! ! ! ! +---6iy2_A ! ! ! ! +--8 ----RC------ ! ! ! +---14 ! ! +3kwq_E ! ! ! ! ! ! +---------2 ----RT------ ! ! ! ! ! +-10 +8grq_A ! ! ! ! ! ! ! ----RG------ ! ! ! ! ! ! ! +7ccr_A +-18 ! ! ! +-11 +------------3 ----RT------ ! +-16 ! ! ! +8hr1_E ! ! +--13 ! ----RC------ ! ! ! +---------------4xzq_E ! ! ! ----RT------ ! ! +-----------------7zs9_e ! ! --KT-------- L ! +--------------------------7cvo_A ! ----RG------ +----------------------------7y7i_E |
> 8jh2_e:RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH ELF1, SPT4/5 AND FOREIGN DNA, STALLED AT SHL(-1) OF THE NUCLEOSOME
--RG--------RG------ +6iy2_A +-------------------------3 --RG--------RT------ ! +8grq_A ! --RG--------RT------ ! +-------------------7zs9_e ! ! HARA----LT--RC------ ! +-16 +3kwq_E ! ! ! +--------------4 --RG----LC--RT------ ! ! +---11 +8hr1_E -19 ! ! HARAYT--LT--RC------ ! ! +--------------4xzq_E ! ! --RT--RG------------ ! ! +-------------------6pww_K ! ! ! --RT----LA--RG------ ! ! ! +---------7unc_a ! ! ! +----9 ------------RA------ ! ! ! ! ! +1zla_C +--18 ! ! +--------5 ------------RA----RA ! ! +-10 +6a5l_g ! +-15 ! ! ------------RC------ ! ! ! ! ! +--7xyf_B ! ! ! ! +-----------7 ------------RT------ ! ! ! +-13 ! +7kbd_C ! ! ! ! ! +--2 ------------RG------ ! ! ! ! ! +8jla_C ! ! ! ! ! ----------IT-------- ! ! ! ! ! +3wkj_D ! ! +-14 +-----------------1 --------------RA---- +-17 ! +6g0l_D ! ! --RCYA------RG------ ! ! +--------7ccr_A ! ! +--------8 ------------RG------ ! ! ! +--------5x0y_G ! +-12 ----------------KG-- ! ! +-7nkx_f ! +---------------6 ------------RG------ ! +-8ox0_C ! HGRGYG--QC--RG------ +--------------------7y7i_E |
> 8jhf_A:NATIVE SUV420H1 BOUND TO 167-BP NUCLEOSOME
--RT---- +-----------------------------8grq_A +-7 LCRT---- +-8 +-----------------------------8hr1_E ! ! ----RA-- ! +-----------------------------6g0l_D ! --RA--RA ! +6a5l_g ! +--------------1 --RG---- --9 +----3 +8txv_G ! ! ! --RG---- ! +--4 +--------------5x0y_G ! ! ! --RG---- ! +---5 +-------------------8ox0_C ! ! ! --RG---- +--6 +----------------------8jla_C ! --RT---- ! +8u14_G +--------------------------2 --RA---- +1zla_C |
> 8jhg_C:NATIVE SUV420H1 BOUND TO 167-BP NUCLEOSOME
----RA------ +1zla_C +--------------4 ----RG------ +----8 +8ox0_C ! ! ----RA----RA +----10 +--------------6a5l_g ! ! ----RG------ +-13 +-------------------5x0y_G ! ! ----RT------ ! ! +7kbd_C ! +-------------------------1 ----RG------ ! +8jla_C ! --------KG-- ! +--7nkx_f ! +-------------5 LA--RG------ ! +-----9 +--7unc_a ! ! ! LC--RT------ ! ! +----------------8hr1_E ! ! ----RC------ ! ! +---7xyf_B ! +--12 +-----6 LT--RC------ ! ! ! ! +---3kwq_E -19 ! ! +---------7 ----RG------ ! ! ! ! ! +7ccr_A ! ! ! ! +---------3 ----RT------ ! +-14 +-11 +8grq_A ! ! ! ! IT---------- ! ! ! ! +3wkj_D ! ! ! +-------------------2 ------RA---- ! +-15 ! +6g0l_D ! ! ! ! ----RG------ ! ! ! +--------------------------6iy2_A ! +-16 ! --KT-------- L ! ! ! +--------------------------7cvo_A ! +-17 ! LT--RC------ ! ! ! +--------------------------4xzq_E +-18 ! ----RT------ ! +--------------------------7zs9_e ! ----RG------ +---------------------------7y7i_E |
> 8jla_C:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME LACKING N-TERMINAL REGION OF H2A, H2B, H3, AND H4
--RT +---------7jzv_N +-------------------2 --RC ! ! +---6qld_f +-3 +-----1 LC-- ! ! +---8bvw_e --4 ! --RT ! +-----------------------------8com_C ! --RT +-----------------------------7on1_e |
> 8kb5_A:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CONTAINING H3.8
RA----LT----RC------ +3kwq_E +--------------1 RG----------RT------ +---11 +8grq_A ! ! RT----LA----RG------ +---18 +--------------7unc_a ! ! RG----------RG------ ! +-------------------6iy2_A ! RT--RG-------------- ! +-------------------6pww_K ! ! ------EA------RG---- ! ! +---------7n8n_A ! ! +-----9 ------------RA----RA ! ! ! +---------6a5l_g ! ! ! ----------------KG-- ! ! +-12 +-7nkx_f ! +-17 ! ! +--------6 ------------RA------ ! ! ! ! ! ! ! +1zla_C ! ! ! ! ! ! +-5 ------------RG------ ! ! ! ! +---10 +8ox0_C ! ! ! +-15 ! ------------RG------ ! ! ! ! ! ! +3w99_F -24 ! ! ! ! +----------3 ------------RG------ ! +-20 ! ! ! +8jla_C ! ! ! +-16 ! ------LT------------ ! ! ! ! +-----------------7ywx_E ! ! ! ! ----------IT-------- ! ! ! ! +3wkj_D ! ! ! +------------------2 --------------RA---- ! +-21 ! +6g0l_D ! ! ! ! RG------------------ ! ! ! +--------------------5z3u_A ! ! ! ------------RC------ ! ! ! +---7xyf_B ! ! ! +------------8 ------------RT------ ! +-22 ! ! +---7kbd_C ! ! ! +---14 --------KT---------- L ! ! ! ! +-7cvo_A ! ! ! +--------------7 ------------RG------ ! ! ! +-5x0y_G +-23 ! RGYG--QC----RG------ ! +----------------------7y7i_E ! RG----------RT------ ! +--------------------7zs9_e +-19 RAYT--LT----RC------ ! +---------------4xzq_E +---13 RCYA--------RG------ ! +7ccr_A +--------------4 RG----LC----RT------ +8hr1_E |
> 8kcb_A:COMPLEX OF DDM1-NUCLEOSOME(H2A) COMPLEX WITH DDM1 BOUND TO SHL2
------RA------ +1zla_C +--------------4 ------RG------ ! +8ox0_C +-------10 ------RT------ ! ! +7kbd_C ! ! +--------------1 ------RG------ +--12 +-9 +5x0y_G ! ! ! ------RA----RA ! ! +--------------6a5l_g ! ! ------RG------ ! +-----------------------8jla_C ! ----KT-------- L ! +----------------7cvo_A ! +-----11 --IT---------- ! ! ! +3wkj_D ! ! +----------------2 --------RA---- ! ! +6g0l_D ! ! ------RC------ ! +-13 +7xyf_B ! ! ! +---6 ----------KG-- ! ! ! ! +7nkx_f -19 ! ! +--------7 LA----RG------ ! ! ! ! ! +7unc_a ! ! ! ! +---5 LC----RT------ ! +-14 +----------8 +8hr1_E ! ! ! ! --LT--RC------ ! ! ! ! +3kwq_E ! ! ! +------------3 ------RT------ ! +-15 ! +8grq_A ! ! ! ! ------RG------ ! ! ! +--------------------------6iy2_A ! +-16 ! LT----RC------ ! ! ! +--------------------------4xzq_E ! +-17 ! ------RG------ ! ! ! +--------------------------7ccr_A +-18 ! ------RT------ ! +--------------------------7zs9_e ! ------RG------ +---------------------------7y7i_E |
> 8kcb_D:COMPLEX OF DDM1-NUCLEOSOME(H2A) COMPLEX WITH DDM1 BOUND TO SHL2
------RA---- +-----------------------------6g0l_D ! IT---------- ! +------3wkj_D ! +----------5 ----RG------ ! +---8 +------5x0y_G ! ! ! ----RG------ ! +-11 +-----------------8ox0_C ! ! ! ----RA------ ! +-13 +---------------------1zla_C ! ! ! ----RG------ -19 +--14 +-----------------------8jla_C ! ! ! ----RA----RA ! ! +------------------------6a5l_g ! ! ----RT------ ! ! +-------------------------7kbd_C ! ! ! ----RC------ ! ! ! +7xyf_B ! ! ! +--3 --------KG-- ! ! ! +--------4 +7nkx_f ! ! ! ! ! ----RG------ ! ! ! +-----6 +---7unc_a +-18 +-15 ! ! ----RG------ ! ! ! ! ! +7ccr_A ! ! ! +-9 +------------2 ----RT------ ! ! ! ! ! +8hr1_E ! ! ! +-10 ! ----RC------ ! ! ! ! ! +------------------4xzq_E ! ! ! ! ! ----RT------ ! +-16 ! ! +--------------------7zs9_e ! ! ! +--12 ----RC------ ! ! ! ! +3kwq_E ! ! ! ! +--------------1 ----RT------ ! ! ! +------7 +8grq_A +-17 ! ! ----RG------ ! ! +--------------6iy2_A ! ! --KT-------- L ! +---------------------------7cvo_A ! ----RG------ +---------------------------7y7i_E |
> 8oja_A:HSV-1 DNA POLYMERASE-PROCESSIVITY FACTOR COMPLEX IN EXONUCLEASE STATE
------IT----------------------------------QGQAVT--FT--IGNGSGYGFT--VAKTLTKARG-- L +------------3iay_A +----------1 ------------------------------DG--FA----FG------------------------WC----KT---- ! +------------2dtu_A +-----3 PIPIVIIIPGFIKGRINTNTFCQGMGDAYT--RG--WGDG--------WG---------------------------- L ! ! +---------------------2xhb_A --4 +-2 --------------------------RT--------------RC----------LC--SCYG--FAYA--------RG L ! +---------------------8g9l_A ! ----------------------------------------------------RC------------------------ +-----------------------------8wpe_G |
> 8osb_E:TWIST1-TCF4-ALX4 COMPLEX ON SPECIFIC DNA
RT--VTKGNA--KA-- L +-----------------------------2lkx_A ! RTQTVAQTNA------ L ! +8osb_E --5 +--------------1 ----NCICNARGRG-- L ! ! +4xrm_B ! +-------3 RT--IAQCNAMG---- L ! ! ! +----1b72_A +-----4 +----------2 RC--IAQCNAYC---- L ! +----3rkq_B ! ----VTCCNAQA--RT L +-----------------------8g87_X |
> 8ox0_C:STRUCTURE OF APO TELOMERIC NUCLEOSOME
--RT +---------7jzv_N +-------------------2 --RC ! ! +---6qld_f +-3 +-----1 LC-- ! ! +---8bvw_e --4 ! --RT ! +-----------------------------8com_C ! --RT +-----------------------------7on1_e |
> 8pmf_A:TRANSCRIPTION FACTOR BARHL2 BOUND TO DNA SEQUENCES
--RT--IAQCNA----MG---- L +---1b72_A +------------2 RART--VTKGNA------KA-- L ! +---2lkx_A +-------4 --RTQTVAQTNA---------- L ! ! +8osb_E ! ! +---------------1 ------NCICNARGRG------ L +-5 +-3 +4xrm_B ! ! ! --RC--IAQCNA----YC---- L ! ! +----------------3rkq_B --6 ! ------VTCCNA----QA--RT L ! +------------------------8g87_X ! ----------------YCFAKC L +-------------------------6pe2_B |
> 8po8_A:STRUCTURE OF ESCHERICHIA COLI HRPA IN COMPLEX WITH ADP AND OLIGONUCLEOTIDE POLY(DC)11 FORMING AN I-MOTIF
ICKC---------------- L +-----------------------------7aud_E +-1 ----RTQTVAQTNA------ L +-2 +-----------------------------8osb_E ! ! ----RTKTIAQCNA----RT L --3 +-----------------------------1ig7_A ! ----RT--VTQTNAMTKTRT L +-----------------------------1jgg_B |
> 8pw0_A:MANGANESE-DEPENDENT TRANSCRIPTIONAL REPRESSOR DR2539 COMPLEXED WITH MANGANESE AND BOUND TO DR1709 PROMOTOR
--------RGSTRTSTHG------RA------ L +-----------------------------3zpl_B +-1 ------DCLT--AGTTRG--RG--RA------ L +-2 +-----------------------------5h3r_A ! ! --TT------KATTQTTGLTRTKA----FTYT L +-3 +-----------------------------2p7c_B ! ! ------SG--PTPGTT----------HG---- L +-4 +-----------------------------7d98_Q ! ! RT--LANTHGTTETYTRG-------------- L --5 +-----------------------------1f4k_B ! ------------------YG------------ +-----------------------------3eyi_B |
> 8q72_D:E. COLI PLASMID-BORNE JETABCD(E248A) CORE IN A CLEAVAGE-COMPETENT STATE
TT----KATTQTTG------LTRT----KAFTYT L +-----------------------------2p7c_B +-1 --KTHG---------------------------- +-2 +-----------------------------5hdn_C ! ! --------------------YG------------ --3 +-----------------------------3eyi_B ! --------------NASTRGHT--STLT------ L +-----------------------------7cby_C |
> 8r3g_D:CENTRAL GLYCOLYTIC GENES REGULATOR (CGGR) BOUND TO DNA OPERATOR
--DCLT--AG--TTRG--RG-------- L +-----------------------------5h3r_A +-1 ----RGSTRT--STHG------------ L +-2 +-----------------------------3zpl_B ! ! TT----KATT--QTTGLTRTKA--FTYT L +-3 +-----------------------------2p7c_B ! ! ----------------YG---------- --4 +-----------------------------3eyi_B ! ----PTPG--TT----------HG---- L +-----------------------------7d98_Q |
> 8rbx_M:STRUCTURE OF INTEGRATOR-PP2A BOUND TO A PAUSED RNA POLYMERASE II-DSIF- NELF-NUCLEOSOME COMPLEX
LA----RG------ +7unc_a +---------------1 ------RT------ +-11 +8grq_A ! ! ------RG------ +-12 +---------------6iy2_A ! ! ------RG------ ! ! +7ccr_A +-16 +--------------2 LC----RT------ ! ! +8hr1_E ! ! LT----RC------ ! ! +--------3kwq_E ! +--------6 --------RA---- ! +--------6g0l_D ! ------RT------ ! +---------7zs9_e ! +-----7 ------RA------ +-----17 ! ! +1zla_C ! ! ! +--------3 ------RG------ ! ! +-10 +8ox0_C ! ! ! ! LT----RC------ ! ! ! ! +---------4xzq_E ! ! +-14 +-----8 ------RG------ ! ! ! ! +---------5x0y_G ! ! ! ! ----------KG-- ! ! ! ! +7nkx_f ! +-15 +----------------4 ------RG------ -19 ! +8jla_C ! ! QC----RG------ ! ! +-----------7y7i_E ! +-----9 ------RA----RA ! +-----------6a5l_g ! ------RC------ ! +---7xyf_B ! +------------5 ------RT------ ! +---13 +---7kbd_C ! ! ! --IT---------- +----18 +----------------3wkj_D ! ----KT-------- L +---------------------7cvo_A |
> 8siy_G:ORIGIN RECOGNITION COMPLEX ASSOCIATED (ORCA) PROTEIN BOUND TO H4K20ME3-NUCLEOSOME
RG--RT---- +-----------------------------8grq_A ! RG-------- ! +8jh2_e ! +------------------4 RGLCRT---- ! +----9 +8hr1_E -12 ! ! ----RG---- ! ! +-------------------8jla_C ! ! ----RA---- ! ! +--7xsx_a ! ! +---5 ------RA-- ! ! +----------6 +--6g0l_D +---11 ! ! ----RT---- ! ! +------8u14_G ! +----8 ----RG---- ! ! ! +7e9c_G ! ! ! +-1 ----RG---- ! ! +-----------------2 +8txv_G ! ! ! ----RA--RA +-10 +6a5l_g ! ----RA---- ! +1zla_C ! +--------------3 ----RG---- +-------7 +8ox0_C ! ----RG---- +--------------5x0y_G |
> 8smw_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE IN COMPLEX WITH RNF168 AND UBCH5C~UB (UBCH5C CHEMICALLY CONJUGATED TO HISTONE H2A. NO DENSITY FOR UB.) (CLASS 1)
------RA------ +1zla_C +--------------4 ------RG------ +---10 +8ox0_C ! ! ------RA----RA +----12 +---------------6a5l_g ! ! ------RG------ +-16 +--------------------5x0y_G ! ! KG----RT------ ! ! +7kbd_C ! +--------------------------1 ------RG------ ! +8jla_C ! ------RT------ ! +------------------------5z23_C ! ! ------RC------ ! ! +-------------------7on1_c ! ! +-11 ----------KG-- ! ! ! ! +---7nkx_f ! +-15 ! +---------------5 --LA--RG------ ! ! ! ! +---7unc_a ! ! ! ! ------RC------ ! ! ! ! +----7xyf_B ! ! ! ! +-6 ----KT-------- L -21 ! +-14 +-------7 +----7cvo_A ! ! ! ! ! --LC--RT------ ! ! ! +-------8 +-----8hr1_E ! ! ! ! ! --IT---------- ! +-17 ! ! ! +3wkj_D ! ! ! ! ! +-------------2 --------RA---- ! ! ! +-13 +6g0l_D ! ! ! ! ------RG------ ! ! ! ! +7ccr_A ! ! ! ! +--------------3 ------RT------ ! +-18 ! +------9 +8grq_A ! ! ! ! ! --LT--RC------ ! ! ! ! +--------------3kwq_E ! ! ! ! ------RG------ ! +-19 ! +---------------------------6iy2_A ! ! ! ! --LT--RC------ ! ! ! +---------------------------4xzq_E +-20 ! ------RT------ ! +----------------------------7zs9_e ! ------RG------ +----------------------------7y7i_E |
> 8sro_B:FOXP3 TETRAMER ON TTTG REPEATS
--------NAST--RGHT--STLT------ L +------7cby_C +--1 --ST----NAST--RTHT--ST-------- L +-------2 +------3l2c_A ! ! ------RTSTHG--------------RA-- L +-------3 +---------3zpl_B ! ! TT--KATTQTTG----LTRT----KAFTYT L +---4 +-----------------2p7c_B ! ! ------KT--RGAT--RGNT---------- L --5 +-------------------------8smh_F ! ----TG--RGRG--YC-------------- L +-----------------------------4yo2_A |
> 8svd_T:STRUCTURE OF M. BAIXIANGNINGIAE DARR-DNA COMPLEX REVEALS NOVEL DIMER- OF-DIMERS DNA BINDING
----TTKA--YGYG L +8sva_T +-----------------1 ----TTKA--YGYA L +------2 +8svd_T ! ! VT--AGDTTTYTLA L --3 +-----------------5gpc_B ! VTRG----QTHTHT L +------------------------5vl9_A |
> 8sxt_A:STRUCTURE OF LINE-1 ORF2P WITH TEMPLATE:PRIMER HYBRID
FGFG------ +------------------8sxt_A ! ------RTPT L --3 +8gh6_A ! +--------------1 --YANA---- L +---2 +8oz7_A ! FCYA------ +--------------6ar1_A |
> 8txv_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE UBIQUITYLATED AT HISTONE H2A K15 IN COMPLEX WITH RNF168 (CLASS 1)
------RG------ +-----------------------------5x0y_G +-20 ------RG------ ! +-----------------------------8ox0_C ! ------RA------ ! +1zla_C ! +---------------------5 ------RA----RA ! ! +6a5l_g ! +---15 ------RT------ ! ! ! +5z23_C ! ! +----------------------1 ------RG------ ! ! +8jla_C ! ! KG----RT------ ! ! +-------------------------7kbd_C ! ! ! ------RC------ ! ! ! +-------------------7on1_c -21 ! ! +-12 ----------KG-- ! ! ! ! ! +---7nkx_f ! +-18 +-16 ! +---------------6 --LA--RG------ ! ! ! ! ! ! +---7unc_a ! ! ! ! ! ! ------RC------ ! ! ! ! ! ! +---7xyf_B ! ! ! ! ! ! +------7 ----KT-------- L ! ! ! ! +-14 ! +---7cvo_A ! ! ! ! ! +---------8 --IT---------- ! ! ! ! ! ! ! +3wkj_D ! ! ! ! ! ! +----------2 --------RA---- ! ! ! ! ! ! +6g0l_D ! ! ! ! ! ! ------RG------ ! ! +-17 ! ! +7ccr_A +-19 ! +-13 +--------------3 ------RT------ ! ! ! +-9 +8grq_A ! ! ! ! ! ------RT------ ! ! ! +-10 +--------------7zs9_e ! ! ! ! ! --LT--RC------ ! ! ! ! ! +3kwq_E ! ! +-11 +--------------4 ------RT------ ! ! ! +8hr1_E ! ! ! ------RG------ ! ! +-----------------6iy2_A ! ! --LT--RC------ ! +-------------------------4xzq_E ! ------RG------ +----------------------------7y7i_E |
> 8u13_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE UBIQUITYLATED AT HISTONE H2A LYSINE 15 IN COMPLEX WITH RNF168-UBCH5C (CLASS 1)
------RG------ +-----------------------------5x0y_G +-20 ------RG------ ! +-----------------------------8ox0_C ! ------RA------ ! +1zla_C ! +-------------4 ------RA----RA ! ! +6a5l_g ! +----------10 ------RT------ ! ! ! +5z23_C ! ! +--------------1 ------RG------ ! ! +8jla_C ! ! KG----RT------ ! ! +----------------------7kbd_C ! ! ! ------RC------ ! ! ! +---7xyf_B ! +-15 ! +-6 ----KT-------- L ! ! ! ! +-------7 +---7cvo_A ! ! ! +-13 ! ! --LC--RT------ ! ! ! ! ! +-------8 +-----8hr1_E -21 ! ! ! ! ! ! --IT---------- ! ! ! ! ! ! ! +3wkj_D ! ! ! ! ! ! +-------------2 --------RA---- ! ! ! ! +-12 +6g0l_D ! ! ! ! ! ------RG------ ! ! +-14 ! +7ccr_A ! +-16 ! ! +--------------3 ------RT------ ! ! ! ! +------9 +8grq_A ! ! ! ! ! ------RT------ ! ! ! ! +--------------7zs9_e ! ! ! ! ------RC------ ! ! ! ! +-------------------7on1_c ! +-17 ! +--11 ----------KG-- ! ! ! ! ! +---7nkx_f ! ! ! ! +---------------5 --LA--RG------ ! ! ! ! +---7unc_a ! +-18 ! ! --LT--RC------ ! ! ! ! +---------------------------3kwq_E ! ! ! ! ------RG------ +-19 ! +---------------------------6iy2_A ! ! --LT--RC------ ! +----------------------------4xzq_E ! ------RG------ +----------------------------7y7i_E |
> 8u14_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE UBIQUITYLATED AT HISTONE H2A LYSINE 15 IN COMPLEX WITH RNF168-UBCH5C (CLASS 2)
------RA------ +1zla_C +--------------4 ------RG------ +---11 +8ox0_C ! ! ------RA----RA +-------14 +--------------6a5l_g ! ! ------RG------ ! +-------------------5x0y_G ! KG----RT------ ! +7kbd_C ! +--------------1 ------RG------ ! +-----------9 +8jla_C ! ! ! ------RT------ ! ! +--------------5z23_C ! ! ------RC------ ! ! +----------------7on1_c ! ! +-12 ----------KG-- ! ! ! ! +---7nkx_f ! ! ! +------------6 --LA--RG------ +-19 +-16 ! ! +7unc_a ! ! ! ! ! +---3 ------RT------ ! ! ! ! +-13 +8grq_A ! ! ! ! ! ! --LT--RC------ ! ! ! ! ! ! +3kwq_E ! ! ! ! ! ! +--------------5 --LC--RT------ ! ! ! ! ! +--10 +8hr1_E ! ! ! +---15 ! ------RG------ ! ! ! ! +--------------7ccr_A ! ! +-17 ! ------RC------ ! ! ! ! ! +---7xyf_B +-20 ! ! ! ! +------7 ----KT-------- L ! ! ! ! ! ! ! +---7cvo_A ! ! ! ! ! +----------8 --IT---------- ! ! +-18 ! ! +3wkj_D ! ! ! ! +----------2 --------RA---- ! ! ! ! +6g0l_D -21 ! ! ! ------RG------ ! ! ! +---------------------------6iy2_A ! ! ! --LT--RC------ ! ! +---------------------------4xzq_E ! ! ------RT------ ! +----------------------------7zs9_e ! ------RG------ +----------------------------7y7i_E |
> 8u3b_G:CRYO-EM STRUCTURE OF E. COLI NARL-TRANSCRIPTION ACTIVATION COMPLEX AT 3.2A
TT--KATT--QTTG--LTRTYT L +-----------------------------2p7c_B +-1 --SGPTPG--TT---------- L +-2 +-----------------------------7d98_Q ! ! ----------------YG---- --3 +-----------------------------3eyi_B ! ----RGSTRT--STHG------ L +-----------------------------3zpl_B |
> 8uvk_B:COSR DNA BOUND FORM II
--RG--DTVTSTRG------WT---- L +-----------------------------6lxn_A +-1 --RG--DTVTST--RG----RC---- L +-2 +-----------------------------4nhj_A ! ! ----------YG-------------- +-3 +-----------------------------3eyi_B ! ! TTKATTQTTG----LTRTKA--FTYT L --4 +-----------------------------2p7c_B ! --------VTKGNAKA---------- L +-----------------------------2lkx_A |
> 8v6v_X:CRYO-EM STRUCTURE OF DOUBLY-BOUND SNF2H-NUCLEOSOME COMPLEX
----------RC-- +-----------------------------6ryu_V ! ------NG--RC-- --3 +--8wha_K ! +---------------------1 EG------SCRG-- L +----2 +--6kw4_Y ! ETNGRG----ICKC L +------------------------7aud_E |
> 8vfz_O:CRYO-EM STRUCTURE OF FOXA1 IN COMPLEX WITH ALBN1 NUCLEOSOME (CLASS 2)
----------------NAST--RGHT--STLT---- L +-------7cby_C +-1 ------ST--------NAST--RTHT--ST------ L +------2 +-------3l2c_A ! ! ----------RGSTRTSTHG--------------RA L +-------3 +---------3zpl_B ! ! --TT--------KATTQTTG----LTRT----KA-- L +-4 +----------------2p7c_B ! ! RT--LA--NTHGTTETYTRG---------------- L --5 +------------------------1f4k_B ! --------------KT--RGAT--RGNT-------- L +--------------------------8smh_F |
> 8wg5_E:CRYO-EM STRUCTURE OF USP16 BOUND TO H2AK119UB NUCLEOSOME
--RG--------RG------ +-------------------6iy2_A ! --RT--RG------------ ! +6pww_K +-16 +--------------1 --RG--------RT------ ! ! +-10 +8grq_A ! ! ! ! --RG--------RT------ ! ! ! +--------------7zs9_e ! +-13 HARA----LT--RC------ ! ! +3kwq_E ! ! +--------------4 --RG----LC--RT------ ! +-11 +8hr1_E ! ! --RT----LA--RG------ ! +---------------7unc_a ! HARAYT--LT--RC------ ! +----------------4xzq_E ! ! ----------------KG-- ! +-12 +7nkx_f ! ! ! +-5 ------------RA------ -19 ! +---------------6 +1zla_C ! ! ! ------------RG------ ! +-14 +8jla_C ! ! ! ------------RC------ ! ! ! +---7xyf_B ! ! ! +-------7 ------------RG------ ! ! ! ! +---8ox0_C ! +-15 +-----9 ----------IT-------- ! ! ! ! +3wkj_D ! ! ! +-----------2 --------------RA---- ! ! ! +6g0l_D ! +-17 ! --RCYA------RG------ ! ! ! ! +---------7ccr_A ! ! ! +--------8 ------------RG------ ! ! ! +---------5x0y_G +-18 ! HGRGYG--QC--RG------ ! +--------------------7y7i_E ! ------------RT------ ! +7kbd_C +---------------------3 ------------RA----RA +6a5l_g |
> 8wha_K:STRUCTURE OF DDM1-NUCLEOSOME COMPLEX IN THE ADP-BEFX STATE WITH DDM1 BOUND TO SHL2 AND SHL-2
--NG--RC-- +-8wha_K +-------------1 ------RC-- +---------2 +-6ryu_V ! ! EG--SCRG-- L --3 +---------------6kw4_Y ! ------ICKC L +-------------------------7aud_E |
> 8xas_E:CRYSTAL STRUCTURE OF ATARR1-DBD IN COMPLEX WITH A DNA FRAGMENT
RT--QTVAQTNA------ L +8osb_E +--1 ------VTKGNA--KA-- L +--------2 +2lkx_A ! ! RT----IAQCNAMG---- L +----3 +--1b72_A ! ! ------NCRG-------- L +-------4 +-----------4xrm_B ! ! RC----IAQCNAYC---- L +----5 +----------------3rkq_B ! ! ------VTCCNAQA--RT L +-6 +------------------------8g87_X ! ! --NG--NA---------- L --7 +-----------------------------2kdz_A ! --RGDTVTSTRG------ L +-----------------------------6lxn_A |
> 8ybk_E:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CONTAINING THE H3.1 E97K MUTANT
LT----RC------ +3kwq_E +--------------1 ------RT------ +------11 +8grq_A ! ! ------RG------ ! +--------------6iy2_A ! LA----RG------ ! +---------7unc_a ! +------9 ------RA----RA ! ! +---------6a5l_g ! +-13 LT----RC------ ! ! ! +--------------4xzq_E ! ! ! ! ----------KG-- ! ! +-10 +7nkx_f ! ! ! +-------6 ------RG------ ! ! ! ! +8jla_C +-18 +-14 +-----8 ------RA------ ! ! ! ! ! +1zla_C ! ! ! ! +-------5 ------RG------ ! ! ! ! +8ox0_C ! ! +-15 ! --IT---------- ! ! ! ! ! +3wkj_D ! ! ! ! +-----------------2 --------RA---- ! ! ! ! +6g0l_D ! ! +-16 ! QC----RG------ ! ! ! ! +-------------------7y7i_E ! ! ! ! ------RC------ -19 ! ! ! +---7xyf_B ! ! ! +----------------7 ------RT------ ! ! ! ! +7kbd_C ! +-17 +---3 ------RG------ ! ! +5x0y_G ! ! ------RG------ ! ! +7ccr_A ! ! +--------------4 LC----RT------ ! +-----12 +8hr1_E ! ! ------RT------ ! +---------------7zs9_e ! ----KT-------- L +-------------------------7cvo_A |
> 9b8u_A:CRYSTAL STRUCTURE OF CRX-RET4 OLIGONUCLEOTIDE COMPLEX
RT--VTKGNA----KA-- L +-----------------------------2lkx_A ! RTQTVAQTNA-------- L ! +8osb_E ! +-1 RT--IAQCNA--MG---- L ! +---------2 +1b72_A +-6 ! ! ----NCICRGRG------ L ! ! +----------3 +--4xrm_B ! ! ! ! RC--IAQCNA--YC---- L ! ! +-4 +------------3rkq_B --7 ! ! ! ----VTCCNA--QA--RT L ! +---5 +-----------------------8g87_X ! ! ------------YCFAKC L ! +-------------------------6pe2_B ! RT----YTNC----NAKG L +-----------------------------8pi8_B |
> 9c4c_G:THE STRUCTURE OF TWO MNTR DIMERS BOUND TO THE NATIVE MNEP PROMOTER SEQUENCE
--TT------KATTQTTGLTRTKA--FTYT L +-----------------------------2p7c_B +-1 ------------------YG---------- +-2 +-----------------------------3eyi_B ! ! RT--LANTHGTTETYTRG------------ L --3 +-----------------------------1f4k_B ! ------SG--PTPGTT--------HG---- L +-----------------------------7d98_Q |
> 9ezz_A:BACTERIAL HISTONE PROTEIN HBB FROM BDELLOVIBRIO BACTERIOVORUS BOUND TO DNA
--------KG-- +7nkx_f +---------4 ----RG------ ! +8jla_C +------9 --KT-------- L ! ! +-7cvo_A ! +--------5 ----RA------ ! ! +1zla_C ! +-3 ----RG------ ! +8ox0_C ! ----RC------ ! +---7xyf_B ! +--------6 ----RT------ +---14 ! ! +7kbd_C ! ! ! +---2 ----RA----RA ! ! +-10 +6a5l_g ! ! ! ! ----RG------ ! ! ! ! +---------7ccr_A ! ! +-12 +--7 ------RA---- ! ! ! ! +---------6g0l_D ! ! ! ! LA--RG------ ! ! ! ! +---------7unc_a +-15 ! ! +-----8 ----RG------ ! ! +-13 +---------5x0y_G ! ! ! ----RT------ ! ! ! +7zs9_e ! ! ! +--------------1 ----RT------ +--16 ! +-11 +8grq_A ! ! ! ! ----RG------ ! ! ! +--------------6iy2_A ! ! ! LC--RT------ +-17 ! +----------------------8hr1_E ! ! ! LT--RC------ ! ! +------------------------4xzq_E +-18 ! IT---------- ! ! +----------------------------3wkj_D -19 ! LT--RC------ ! +----------------------------3kwq_E ! QC--RG------ +----------------------------7y7i_E |
> 9fgq_D:STRUCTURE OF HUMAN APC3LOOP 375-381 BOUND TO THE NCP
--------RA---- +-----------------------------6g0l_D ! --IT---------- ! +------3wkj_D ! +----------7 ------RG------ ! ! +------5x0y_G ! +-----12 ------RA------ ! ! ! +1zla_C ! ! ! +---------------3 ------RG------ ! ! +-10 +8ox0_C ! +-15 ! ------RG------ -19 ! ! +---------------8jla_C ! ! ! ------RT------ ! ! ! +7kbd_C ! ! +------------------------1 ------RA----RA ! ! +6a5l_g ! ! ----------KG-- ! ! +---7nkx_f ! ! +----------------5 LA----RG------ ! ! ! +---7unc_a ! ! +-13 LT----RC------ ! ! ! ! +3kwq_E +-18 ! ! +--------------2 ------RT------ ! ! +-----9 +8grq_A ! ! ! ------RT------ ! ! +--------------7zs9_e ! +----14 ------RC------ ! ! ! +---7xyf_B ! ! ! +-----6 ------RG------ ! ! ! ! +---6iy2_A ! ! ! +-----8 ------RG------ ! +-16 ! ! ! +7ccr_A ! ! ! +---11 +---------4 LC----RT------ ! ! ! ! +8hr1_E ! ! ! ! LT----RC------ +-17 ! +---------------4xzq_E ! ! ----KT-------- L ! +--------------------------7cvo_A ! QC----RG------ +---------------------------7y7i_E |
> 9foy_A:TERNARY COMPLEX OF A MYCOBACTERIUM TUBERCULOSIS DNA GYRASE CORE FUSION WITH DNA AND THE INHIBITOR AMK32B
--KA------SA------------RGIG---------- +-----------------------------2xcr_U +-1 ----RC----ST--------------IA---------- +-2 +-----------------------------3ksb_B ! ! KTKT---------------------------------- +-3 +-----------------------------7z9c_D ! ! ------------NASTRG--STLT-------------- L +-4 +-----------------------------7cby_C ! ! ------DCAG--TTRG--RG----RA------------ L --5 +-----------------------------5h3r_A ! ----------------------------NTATATSTRG L +-----------------------------1dh3_C |