(updated: Tue Jun 30 19:44:14 2026)
In these diagrams sets of entries from the database are clustered to show their interface (left) and overall structural (right) similarity. Mouse over complex names to check their SCOP superfamilies and click on the L links to see their structure-based sequence logos. Please check the help page for more details.
> 1a6y_A:REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX
--EAKG--KTRG-- L +4umm_A +-------------------1 ----KGVG--RG-- L ! +4tnt_B +----6 ----KGVT--RG-- L ! ! +5emc_A ! ! +-2 --ECKGAGKGRG-- L ! +------------------3 +1hcq_E ! ! --ECKGAGKTRG-- L --7 +4aa6_B ! CAECKG--KGRG-- L ! +----1cit_A ! +------------4 ----KGVT--RGRC L +------5 +----2c7a_B ! --ECKGAG--RG-- L +-----------------4ond_A |
> 1awc_A:MOUSE GABP ALPHA/BETA DOMAIN BOUND TO DNA
QCKTRGATRGNT-- L +-----------------------------8smh_F +-2 ECKTRGATRGNT-- L ! +-----------------------------1pue_E --3 DCKTRGSTRGYA-- L ! +4bnc_A +----------------------------1 DCKTRG--RGYAKA L +5jvt_A |
> 1b72_A:PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEX
--RT----IAQCNA----MG---- L +---1b72_A +--4 --RT--QTVAQTNA---------- L ! ! +8osb_E ! +---1 RART----VTKGNA------KA-- L ! +2lkx_A +-----5 --------NCIC--RGRG------ L ! ! +4xrm_B ! ! +-2 --------NCITNA----RGRG-- L +-------------6 +-----3 +6fqq_E ! ! ! ----RT--NT--NA----IARG-- L ! ! +4cyc_B --7 ! --RC----IAQCNA----YC---- L ! +------------3rkq_B ! ------------------YCFAKC L +--------------------------6pe2_B |
> 1bc8_C:STRUCTURES OF SAP-1 BOUND TO DNA SEQUENCES FROM THE E74 AND C-FOS PROMOTERS PROVIDE INSIGHTS INTO HOW ETS PROTEINS DISCRIMINATE BETWEEN RELATED DNA TARGETS
------QCKT--RGAT--RGNT---------- L +-----------------------------8smh_F ! ------DCKT--RGST--RGYA---------- L ! +4bnc_A +-4 +---------------1 ------DCKT--RG----RGYA--KA------ L ! ! +-------2 +5jvt_A ! ! ! ! ------ECKT--RGAT--RGNT---------- L +-5 +----3 +----------------1pue_E ! ! ! ----------RGNT--RGSTATRA-------- L ! ! +------------------------2o6g_G +-6 ! ------NCTTNA------VTNT---------- L ! ! +-----------------------------1pp7_U +-7 ! --------------------------KG---- L ! ! +-----------------------------5xfq_A --8 ! TT----KATTQTTG----LTRT--KA--FTYT L ! +-----------------------------2p7c_B ! --KTHG-------------------------- +-----------------------------5hdn_C |
> 1cf7_A:STRUCTURAL BASIS OF DNA RECOGNITION BY THE HETERODIMERIC CELL CYCLE TRANSCRIPTION FACTOR E2F-DP
--------ST--TAQC------------------------ +8b4b_W +----------------2 --------------NC----ITNA--RGRG---------- L +--------5 +6fqq_E ! ! --STRGQTQA--ST----------------HG----KT-- L +--7 +----------------7t8k_B ! ! --------------RC----YG----------KT------ ! ! +---2acj_B ! +---------------------3 ----RGTC--DCVA----RGRC------------RC---- L +-8 +---8hih_Q ! ! ------------NGSA--RGHG--SC-------------- L ! ! +6el8_A ! ! +-----------------1 ------------NAST--RGHT--STFT------------ L ! ! ! +1vtn_C +-9 +----------6 --NTHG--RT--YTPT----------------------RT L ! ! ! +----6qil_A ! ! +------------4 ------------NAST--RTHT--STLT------------ L -10 ! +----4lg0_A ! ! ------HT----RTITYT---------------------- L ! +-----------------------------4kfc_B ! RA-------------------------------------- L +-----------------------------8ac8_C |
> 1cit_A:DNA-BINDING MECHANISM OF THE MONOMERIC ORPHAN NUCLEAR RECEPTOR NGFI-B
CAECKG--KGRG--RTRT L +----1cit_A +------3 --EAKG--KTRG------ L ! ! +4umm_A ! +----1 ----KGVG--RG------ L +------------4 +4tnt_B ! ! ----KGVT--RG------ L ! ! +5emc_A +-5 +----------2 --ECKGAG--KTRG---- L ! ! +4aa6_B --6 ! ----KGVT--RG------ L ! +------------------------2c7a_B ! --ECKGAG--RG------ L +-------------------------4ond_A |
> 1ddn_B:DIPHTHERIA TOX REPRESSOR (C102D MUTANT)/TOX DNA OPERATOR COMPLEX
----RGSTRTSTHG------------ L +3zpl_B +---------------1 ------------RCYG----KT---- +----2 +2acj_B ! ! --------------YG---------- +-------3 +----------------3eyi_B ! ! TT----KATTQTTGLTRTKA--FTYT L --4 +---------------------2p7c_B ! --DCLT--AGTTRG--RG-------- L +-----------------------------5h3r_A |
> 1dsz_A:STRUCTURE OF THE RXR/RAR DNA-BINDING DOMAIN HETERODIMER IN COMPLEX WITH THE RETINOIC ACID RESPONSE ELEMENT DR1
CAECKG--KGRG-- L +----1cit_A +-------------3 --EAKG--KTRG-- L ! ! +4umm_A ! +----1 ----KGVG--RG-- L ! +4tnt_B +------5 ----KGVT--RG-- L ! ! +5emc_A ! ! +---------------2 --ECKGAGKGRG-- L +-6 +--4 +1hcq_E ! ! ! --ECKGAG--KTRG L ! ! +---------------4aa6_B --7 ! ----KGVT--RG-- L ! +-------------------------2c7a_B ! --ECKGAG--RG-- L +--------------------------4ond_A |
> 1dux_F:ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITION
QCKT--RGAT--RGNT-------- L +-----------------------------8smh_F +-3 DCKT--RG----RGYA--KA---- L ! +-----------------------------5jvt_A +-4 DCKT--RGST--RGYA-------- L ! ! +--4bnc_A ! ! +------------------1 ECKT--RGAT--RGNT-------- L +-5 +-------2 +--1pue_E ! ! ! ----RGNT--RGSTATRA------ L ! ! +---------------------2o6g_G --6 ! ----------------------KG L ! +-----------------------------5xfq_A ! ------RC----YG------KT-- +-----------------------------2acj_B |
> 1f4k_B:CRYSTAL STRUCTURE OF THE REPLICATION TERMINATOR PROTEIN/B-SITE DNA COMPLEX
--------NASTRGHTSTFT L +-----------------1vtn_C +-----------2 --------NGSARGHGSC-- L ! ! +----6el8_A --3 +------------1 --------NASTRTHTSTLT L ! +----4lg0_A ! LTNTHGRTYTPT-------- L +-----------------------------6qil_A |
> 1fjl_B:HOMEODOMAIN FROM THE DROSOPHILA PAIRED PROTEIN BOUND TO A DNA OLIGONUCLEOTIDE
RART----VTKGNA--KA L +--------------------2lkx_A ! --RT----IAQCNAMG-- L +-----6 +----1b72_A ! ! +------4 --RC----IAQCNAYC-- L ! ! ! +----3rkq_B ! +--------5 --RT--QTVAQTNA---- L ! ! +---8osb_E ! ! ! --------NCICNARGRG L --7 +-------3 +4xrm_B ! ! +-1 --------NCITNARGRG L ! +--2 +6fqq_E ! ! ----RT--NT--NAIARG L ! +4cyc_B ! --------VTCCNAQA-- L +--------------------------8g87_X |
> 1fok_A:STRUCTURE OF RESTRICTION ENDONUCLEASE FOKI BOUND TO DNA
QANARGQGDTNTWCNGNCECSAKGRGMG---------------------- L +-------------------------1fok_A +--4 ----------------------------------------YG-------- ! ! +---3eyi_B ! +---------------------2 --------------------------------------RCYG------KT ! +---2acj_B +-5 --------------------------------------NCITNARGRG-- L ! ! +6fqq_E ! ! +-----------------1 --------------------------------------NT--NAIARG-- L +-6 +----------3 +4cyc_B ! ! ! ----------------------------RC--------IAQCNAYC---- L ! ! +-----------------3rkq_B +-7 ! --------------------------------------NCICNARGRG-- L ! ! +-----------------------------4xrm_B --8 ! ------------------------------------QTVAQTNA------ L ! +-----------------------------8osb_E ! ------------------------------TTKATTQTTGLTRT--KA-- L +-----------------------------2p7c_B |
> 1hcq_E:THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTS
--ECKGAGKGRG L +1hcq_E +--------------2 --ECKGAG--RG L +-4 +4ond_A ! ! ----KGVG--RG L ! +---------------4tnt_B +--5 ----KGVT--RG L ! ! +5emc_A ! ! +--------------1 --EAKG--KTRG L +-6 +--3 +4umm_A ! ! ! ----KGVT--RG L ! ! +--------------2c7a_B --7 ! --ECKGAGKTRG L ! +--------------------4aa6_B ! CAECKG--KGRG L +---------------------1cit_A |
> 1if1_B:INTERFERON REGULATORY FACTOR 1 (IRF-1) COMPLEX WITH DNA
HTLT------RGNT--RGSTAT--RA-- L +-----------------------------2o6g_G +-2 ------QCKT--RGAT--RGNT------ L +-3 +-----------------------------8smh_F ! ! ------ECKT--RGAT--RGNT------ L +-4 +-----------------------------1pue_E ! ! ----------NAST--RTHT--STLT-- L --5 +-----------------------------4lg0_A ! ----DCKT--RGST----RGYA------ L ! +4bnc_A +----------------------------1 ----DCKT--RG------RGYA----KA L +5jvt_A |
> 1ig7_A:MSX-1 HOMEODOMAIN/DNA COMPLEX STRUCTURE
RART----VTKGNA--KA-- L +-------------------2lkx_A ! --RT----IAQCNAMG---- L +-----6 +----1b72_A ! ! +--4 --RC----IAQCNAYC---- L ! ! ! +----3rkq_B ! +-----------5 --RT--QTVAQTNA------ L ! ! +--8osb_E ! ! ! --------NCRG-------- L +-7 +----3 +4xrm_B ! ! ! +-1 --------NCITNARGRG-- L ! ! +--2 +6fqq_E ! ! ! ----RT--NT--NAIARG-- L --8 ! +4cyc_B ! ! --------VTCCNAQA--RT L ! +-------------------------8g87_X ! --------------YCFAKC L +--------------------------6pe2_B |
> 1jfi_B:CRYSTAL STRUCTURE OF THE NC2-TBP-DNA TERNARY COMPLEX
> 1jgg_B:EVEN-SKIPPED HOMEODOMAIN COMPLEXED TO AT-RICH DNA
RT--QTVA----QTNA---------- L +8osb_E +--1 RT----VT----KGNA----KA---- L +---4 +2lkx_A ! ! RT----IA----QCNA--MG------ L ! +--1b72_A +---------5 ------NC----ICNA--RGRG---- L ! ! +4xrm_B ! ! +-2 ------NC----ITNA--RGRG---- L +---------6 +-----3 +6fqq_E ! ! ! --RT--NT------NA--IARG---- L ! ! +4cyc_B +--7 ! RC----IA----QCNA--YC------ L ! ! +----------------3rkq_B --8 ! ------VT----CCNA--QA----RT L ! +--------------------------8g87_X ! RT------YTNC----NA----KG-- L +-----------------------------8pi8_B |
> 1k61_B:MATALPHA2 HOMEODOMAIN BOUND TO DNA
--RT----------NT--NAIARG L +4cyc_B +----------------1 --------------NCITNARGRG L +----2 +6fqq_E ! ! RT------------VTQTNA--RG L +-3 +----------------8ejp_B ! ! ----------STTAQCST------ --4 +---------------------8b4b_W ! ----STRGQTQAST---------- L +-----------------------7t8k_B |
> 1kb2_B:CRYSTAL STRUCTURE OF VDR DNA-BINDING DOMAIN BOUND TO MOUSE OSTEOPONTIN (SPP) RESPONSE ELEMENT
CAECKG--KGRG--RT L +----1cit_A +-------------3 --EAKG--KTRG---- L ! ! +4umm_A ! +----1 ----KGVG--RG---- L ! +4tnt_B +------5 ----KGVT--RG---- L ! ! +5emc_A ! ! +---------------2 --ECKGAGKGRG---- L +-6 +--4 +1hcq_E ! ! ! --ECKGAG--KTRG-- L ! ! +---------------4aa6_B --7 ! ----KGVT--RG---- L ! +-------------------------2c7a_B ! --ECKGAG--RG---- L +--------------------------4ond_A |
> 1lat_A:GLUCOCORTICOID RECEPTOR MUTANT/DNA COMPLEX
CAECKG--KGRG L +----1cit_A +-------------4 --EAKG--KTRG L ! ! +4umm_A ! +----1 ----KGVG--RG L ! +4tnt_B +------5 ----KGVT--RG L ! ! +5emc_A ! ! +-2 --ECKGAGKGRG L +-6 +----------------3 +1hcq_E ! ! ! --ECKGAGKTRG L ! ! +-4aa6_B --7 ! ----KGVT--RG L ! +-------------------------2c7a_B ! --ECKGAG--RG L +--------------------------4ond_A |
> 1le8_A:CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2-3A HETERODIMER BOUND TO DNA COMPLEX
----NCICNARGRG L +4xrm_B +-2 ----NCITNARGRG L +-----------3 +6fqq_E ! ! RT--NT--NAIARG L ! +4cyc_B +----5 --QTVAQTNA---- L ! ! +8osb_E ! ! +--1 ----VTKGNA--KA L +--------6 +---------4 +2lkx_A ! ! ! ----IAQCNAMG-- L ! ! +--1b72_A --7 ! ----IAQCNAYC-- L ! +-----------------3rkq_B ! ----VTCCNAQA-- L +--------------------------8g87_X |
> 1lo1_A:ESTROGEN RELATED RECEPTOR 2 DNA BINDING DOMAIN IN COMPLEX WITH DNA
CAECKG--KGRG--RTRT L +----1cit_A +-------------4 --EAKG--KTRG------ L ! ! +4umm_A ! +----1 ----KGVG--RG------ L +------5 +4tnt_B ! ! --ECKGAGKGRG------ L ! ! +-1hcq_E ! +----------------3 --ECKGAG--KTRG---- L +-6 ! +4aa6_B ! ! +-2 ----KGVT--RG------ L ! ! +5emc_A --7 ! ----KGVT--RG------ L ! +-------------------------2c7a_B ! --ECKGAG--RG------ L +--------------------------4ond_A |
> 1puf_A:CRYSTAL STRUCTURE OF HOXA9 AND PBX1 HOMEODOMAINS BOUND TO DNA
--RT----IAQCNAMG---- L +---1b72_A +------4 RART----VTKGNA--KA-- L ! +---2lkx_A +-5 --RT--QTVAQTNA------ L ! ! +---8osb_E ! ! ! --------NCICNARGRG-- L ! +------3 +4xrm_B +-------------6 ! +-1 --------NCITNARGRG-- L ! ! +--2 +6fqq_E ! ! ! ----RT--NT--NAIARG-- L --7 ! +4cyc_B ! ! --RC----IAQCNAYC---- L ! +------------3rkq_B ! --------VTCCNAQA--RT L +--------------------------8g87_X |
> 1puf_B:CRYSTAL STRUCTURE OF HOXA9 AND PBX1 HOMEODOMAINS BOUND TO DNA
--------NCITNA------RGRG L +6fqq_E +-----------------------------1 ----RT--NT--NAIARG------ L +-3 +4cyc_B ! ! RART----VTKGNAKA-------- L +-4 +-----------------------------2lkx_A ! ! --RC----IAQCNAYC-------- L +-5 +-----------------------------3rkq_B ! ! --------NCICNA----RGRG-- L --6 +-----------------------------4xrm_B ! --RT--QTVAQTNA---------- L ! +8osb_E +----------------------------2 --RT----IAQCNAMG-------- L +1b72_A |
> 1qbj_C:CRYSTAL STRUCTURE OF THE ZALPHA Z-DNA COMPLEX
------------RC----YG--------KT------ +---2acj_B +----------------------3 --RGTC--DCVA----RGRC----------RC---- L ! +---8hih_Q ! ----ST--TAQC----ST------------------ +--8 +8b4b_W ! ! +---------------1 ------------NC----ITNA--RGRG-------- L ! ! ! +6fqq_E ! +----------5 STRGQTQA--ST----------------HG--KT-- L ! ! +--7t8k_B +-9 +------------2 ------------NT------NA--IARG-------- L ! ! +--4cyc_B ! ! ----------NAST--RGHT--STFT---------- L ! ! +---------------------1vtn_C ! ! ! NTHG--RT--YTPT--------------------RT L -10 +-------7 +----6qil_A ! ! +------------4 ----------NAST--RTHT--STLT---------- L ! +---6 +----4lg0_A ! ! ----------NGSA--RGHG--SC------------ L ! +-----------------6el8_A ! ----HT----RTITYT-------------------- L +-----------------------------4kfc_B |
> 1sax_A:THREE-DIMENSIONAL STRUCTURE OF S.AUREUS METHICILLIN-RESISTANCE REGULATING TRANSCRIPTIONAL REPRESSOR MECI IN COMPLEX WITH 25-BP DS- DNA
TT------KATTQTTG--LTRT----KA----FTYT L +--------2p7c_B +---------3 ------------NASTRGHT--STFT---------- L ! +--------1vtn_C +----------5 ----DCLT--AGTTRG----RG--------RA---- L ! ! +5h3r_A +-6 +------------------1 --------------RC--YG--------KT------ ! ! +2acj_B ! ! ------------------YG---------------- ! +-----------------------------3eyi_B --7 ------------NASTRTHT--ST------------ L ! +---3l2c_A ! +-----2 ------------NASTRGHT--STLT---------- L +-------------------4 +---7cby_C ! --LANTHGTTETYTRG-------------------- L +---------1f4k_B |
> 1sfu_A:CRYSTAL STRUCTURE OF THE VIRAL ZALPHA DOMAIN BOUND TO LEFT-HANDED Z- DNA
----------------RC----YG--------KT---- +-2acj_B +--------------2 VT--HTPTSA----TTKG------------------YT L +------------4 +-9c4c_G ! ! ------RGTC--DCVA----RGRC----------RC-- L +-5 +----------------8hih_Q ! ! ----ITRGECSC--SGKG-------------------- L +-6 +-----------------------------5i2d_R ! ! ----------------NAST--HT--STFT-------- L ! ! +------1vtn_C +-7 +----------------------3 --------------NAST--RTHT--STLT-------- L ! ! +------4lg0_A ! ! --QTSTRTETTA----RA-------------------- L --8 +-----------------------------3iyd_H ! ----------------NT------NA--IARG------ L ! +4cyc_B +-----------------------------1 ----------------NC----ITNA--RGRG------ L +6fqq_E |
> 1u35_G:CRYSTAL STRUCTURE OF THE NUCLEOSOME CORE PARTICLE CONTAINING THE HISTONE DOMAIN OF MACROH2A
> 1vtn_C:CO-CRYSTAL STRUCTURE OF THE HNF-3/FORK HEAD DNA-RECOGNITION MOTIF RESEMBLES HISTONE H5
--NASTRGHT--STFT--------RTRA L +------1vtn_C +-------------1 --NASTRTHT--STLT------------ L +---2 +------4lg0_A ! ! ----RC--YG--------KT-------- +-3 +--------------------2acj_B ! ! KT--RG--RGYA----KA---------- L --4 +------------------------5jvt_A ! --------------------KGKG---- L +-------------------------5xfq_A |
> 1w0t_A:HTRF1 DNA-BINDING DOMAIN IN COMPLEX WITH TELOMERIC DNA.
RT----------QTVAQTNA-- L +8osb_E +--1 RT------------VTKGNA-- L +-----------------2 +2lkx_A ! ! RT------------IAQCNAMG L +--------3 +--1b72_A ! ! RC------------IAQCNAYC L +-4 +--------------------3rkq_B ! ! --NG--RGKG--SGSAQAVC-- L --5 +-----------------------------5no6_N ! ----NA--RTQT--EC------ L +-----------------------------2kdz_A |
> 1xsd_A:CRYSTAL STRUCTURE OF THE BLAI REPRESSOR IN COMPLEX WITH DNA
TT------KATTQTTG----LTRT----KA--FTYT L +-------2p7c_B +--3 --------DCKT--RG----RGYA----KA------ L +-------------4 +-------5jvt_A ! ! ------------NAST--RGHT--STFT-------- L ! +----------1vtn_C +-7 ------RGSTRTSTHG----------------RA-- L ! ! +---------------3zpl_B ! +--------5 ------------NAST--RTHT--ST---------- L ! ! +3l2c_A +---8 +---------------2 --ST--------NAST--RTHT--STLT-------- L ! ! +4lg0_A ! ! ----DCLT--AGTTRG------RG--------RA-- L ! ! +5h3r_A --9 ! +----------------1 --------------RC----YG--------KT---- ! +--------6 +2acj_B ! ! --------------------YG-------------- ! +----------------3eyi_B ! --------DCKT--RGST--RGYA------------ L +-----------------------------4bnc_A |
> 1yo5_C:ANALYSIS OF THE 2.0A CRYSTAL STRUCTURE OF THE PROTEIN-DNA COMPLEX OF HUMAN PDEF ETS DOMAIN BOUND TO THE PROSTATE SPECIFIC ANTIGEN REGULATORY SITE
DCKTRG--RGYA-------- L +-----------------------------3zp5_A +-2 DCKTRGSTRGYC-------- L ! +-----------------------------4uno_A +-3 ----ATNTCT----SC---- L ! ! +-------------8hcm_A +-4 +---------------1 --------RG--NG------ ! ! +-------------7dci_A --5 ! ----------------KGKG L ! +-----------------------------5xfq_A ! DCKTRG--RGYA-------- L +-----------------------------1dux_F |
> 1z9c_A:CRYSTAL STRUCTURE OF OHRR BOUND TO THE OHRA PROMOTER: STRUCTURE OF MARR FAMILY PROTEIN WITH OPERATOR DNA
--DCLT--AGTTRG----RG----RA---- L +5h3r_A +---------------1 ------------RC--YG----KT------ +-----2 +2acj_B ! ! ----RGSTRTSTHG----------RA---- L +-------3 +---------------3zpl_B ! ! TT----KATTQTTG--LTRTKA----FTYT L +-4 +---------------------2p7c_B ! ! ----RGTCTA--RGNT--------RT---- L --5 +-----------------------------4fx4_B ! ----------------YG------------ +-----------------------------3eyi_B |
> 1zq3_P:NMR SOLUTION STRUCTURE OF THE BICOID HOMEODOMAIN BOUND TO THE CONSENSUS DNA BINDING SITE TAATCC
--RT--QTVAQTNA------ L +8osb_E +------1 RART----VTKGNA--KA-- L ! +2lkx_A +----5 --------NCICNARGRG-- L ! ! +4xrm_B ! ! +-2 --------NCITNARGRG-- L ! +-----3 +6fqq_E +--------------6 ! ----RT--NT--NAIARG-- L ! ! +4cyc_B ! ! --RT----IAQCNAMG---- L --7 ! +----1b72_A ! +------4 --RC----IAQCNAYC---- L ! +----3rkq_B ! --------------YCFAKC L +--------------------------6pe2_B |
> 2a07_J:CRYSTAL STRUCTURE OF FOXP2 BOUND SPECIFICALLY TO DNA.
------------------NAST--RGHT--STLT---------- L +7cby_C +----1 ------------------NAST--RGHT--STFT---------- L +---------------3 +1vtn_C ! ! ------ST----------NAST--RTHT--STLT---------- L ! +-----4lg0_A +-7 --TT--------KATT--QTTG----LTRT----KA----FTYT L ! ! +----2p7c_B ! ! +------------2 ----------------------------------------KG-- L +--8 +---5 +----5xfq_A ! ! ! ------------------RC------YG--------KT------ ! ! +-----------------2acj_B ! ! --------------KT----RG----RGYA----KA-------- L ! +----------------------5jvt_A +-10 ------ST----------NAST--RTHT--ST------------ L ! ! +---------3l2c_A ! ! +----------4 ------------------RGNT--RGSTAT--RA---------- L ! ! +--6 +---------2o6g_G +-11 ! ! ! --------RGSTRT--STHG------------------RA---- L ! ! +-9 +--------------------3zpl_B ! ! ! RT--LA--NTHGTTET--YTRG---------------------- L -12 ! +-----------------------1f4k_B ! ! --------------KT----RGAT--RGNT-------------- L ! +----------------------------8smh_F ! --------------------------YG---------------- +-----------------------------3eyi_B |
> 2a66_A:HUMAN LIVER RECEPTOR HOMOLOGUE DNA-BINDING DOMAIN (HLRH-1 DBD) IN COMPLEX WITH DSDNA FROM THE HCYP7A1 PROMOTER
CAECKG--KGRG-- L +----1cit_A +-------------4 --EAKG--KTRG-- L ! ! +4umm_A ! +----1 ----KGVG--RG-- L ! +4tnt_B +------5 ----KGVT--RG-- L ! ! +5emc_A ! ! +-2 --ECKGAGKGRG-- L +-6 +----------------3 +1hcq_E ! ! ! --ECKGAG--KTRG L ! ! +-4aa6_B --7 ! ----KGVT--RG-- L ! +-------------------------2c7a_B ! --ECKGAG--RG-- L +--------------------------4ond_A |
> 2acj_B:CRYSTAL STRUCTURE OF THE B/Z JUNCTION CONTAINING DNA BOUND TO Z-DNA BINDING PROTEINS
----------------RC--YG------KT------ +2acj_B +-1 --RGTGRGTG----RTET------------HA---- L +------------2 +1h9t_B ! ! --VTSARGTA----RT-------------------- L +---------3 +6za3_B ! ! --------TCTG--YTRT------------------ L +-5 +------------7vpz_N ! ! --------------NASTRTHTNTSTLT-------- L +-7 +----------------------3co6_C ! ! VT--HTPTSA----TTKG--------------YT-- L +-8 +-----------------------9c4c_G ! ! ----STQASGAT--STQT----------------QA L +-9 +------------------------4on0_B ! ! ------RCTT----TTHTLA---------------- L ! ! +-----------------7e1b_B +-10 +-------4 ------RGTC--DCVA--RGRC--------RC---- L ! ! +-----------------8hih_Q +-11 ! ------SANCTG--TTPT----------------RT L ! ! +--------------------------5hlg_E +-12 ! --------------------YGRG------------ ! ! +--------------------------4wcg_A ! ! ----ST--PTTC--STQC----RA------------ L +-13 +---------------------------1ddn_B ! ! --------------------------------RC-- ! ! +-----------------------8efv_A +-14 +---6 ETNTSCRGHC----RT--------------QA---- L ! ! +-----------------------4h0e_A +-15 ! ------RGTG--DTVT--RT---------------- L ! ! +---------------------------8hig_A +-16 ! ----STRGQTQA--ST------------HG------ L ! ! +---------------------------7t8k_B +-17 ! ----ST----TC----QG----RG------------ ! ! +----------------------------7b24_C +-18 ! --------------------YG-------------- ! ! +----------------------------2heo_D +-19 ! ----TT--RGRT------------------SG---- L ! ! +----------------------------2v1u_A -20 ! ----STRGECTA--NGKG------------------ L ! +----------------------------3mzh_A ! --YAKTPTPG----YTRG------------------ L +----------------------------4mtd_D |
> 2c6y_A:CRYSTAL STRUCTURE OF INTERLEUKIN ENHANCER-BINDING FACTOR 1 BOUND TO DNA
----------------NAST--RGHT--STLT---------- L +-7cby_C +----1 ----------------NAST--RGHT--STFT---------- L +--------4 +-1vtn_C ! ! ------ST--------NAST--RTHT--STLT---------- L +------6 +------4lg0_A ! ! RT--LA--NTHGTTETYTRG---------------------- L +--7 +---------------1f4k_B ! ! ----------RGSTRTSTHG------------------RA-- L ! ! +-3zpl_B +-8 +--------------------2 ------------------RC----YG---------------- ! ! +-2acj_B ! ! ------ST--------NAST--RTHT--ST------------ L ! ! +----------3l2c_A --9 +--------------5 --------------------NTRGSTAT--RA---------- L ! +----------2o6g_G ! --TT--------KATTQTTG----LTRT----KA------FT L ! +-----2p7c_B +--------------------3 ----------------------------------KGKG---- L +-----5xfq_A |
> 2c7a_B:STRUCTURE OF THE PROGESTERONE RECEPTOR-DNA COMPLEX
--ECKGAGKGRG L +-----------------------------8cef_H +-1 HAECKG--RGRG L +-2 +-----------------------------1a6y_A ! ! --ETKGAT--RG L --3 +-----------------------------1lat_A ! --EAKG--KTRG L +-----------------------------2han_A |
> 2d5v_B:CRYSTAL STRUCTURE OF HNF-6ALPHA DNA-BINDING DOMAIN IN COMPLEX WITH THE TTR PROMOTER
----------RT--QTVAQTNA---- L +8osb_E +--1 ----------RT----VTKGNA--KA L +------4 +2lkx_A ! ! ----------RT----IAQCNAMG-- L ! +--1b72_A +-------5 ----------------NCICNARGRG L ! ! +4xrm_B ! ! +-2 ----------------NCITNARGRG L +--------6 +--------3 +6fqq_E ! ! ! ------------RT--NT--NAIARG L ! ! +4cyc_B --7 ! ----------RC----IAQCNAYC-- L ! +-----------------3rkq_B ! SGQATGCARG---------------- L +--------------------------8g87_X |
> 2ff0_A:SOLUTION STRUCTURE OF STEROIDOGENIC FACTOR 1 DNA BINDING DOMAIN BOUND TO ITS TARGET SEQUENCE IN THE INHIBIN ALPHA-SUBUNIT PROMOTER
--EA--KG----KTRG-- L +4umm_A +--------------1 ------KGVG----RG-- L ! +4tnt_B +-------4 ----EC--KGAG--KTRG L ! ! +4aa6_B +-6 +--------------2 ------KGVT----RG-- L ! ! +5emc_A ! ! --EC--KGAG--KGRG-- L ! +----------------------1hcq_E --7 CAEC--KG----KGRG-- L ! +----1cit_A ! +------------3 ------KGVT----RG-- L +------5 +----2c7a_B ! --EC--KGAG----RG-- L +-----------------4ond_A |
> 2han_A:STRUCTURAL BASIS OF HETERODIMERIC ECDYSTEROID RECEPTOR INTERACTION WITH NATURAL RESPONSE ELEMENT HSP27 GENE PROMOTER
--EAKG--KTRG-- L +4umm_A +-------------------1 ----KGVG--RG-- L ! +4tnt_B +----6 --ECKGAG--KTRG L ! ! +--------------4aa6_B ! +----4 ----KGVT--RG-- L ! ! +5emc_A --7 +--------------2 --ECKGAGKGRG-- L ! +1hcq_E ! CAECKG--KGRG-- L ! +----1cit_A ! +------------3 ----KGVT--RG-- L +------5 +----2c7a_B ! --ECKGAG--RG-- L +-----------------4ond_A |
> 2han_B:STRUCTURAL BASIS OF HETERODIMERIC ECDYSTEROID RECEPTOR INTERACTION WITH NATURAL RESPONSE ELEMENT HSP27 GENE PROMOTER
CAECKG--KGRG-- L +---1cit_A +-------4 --EAKG--KTRG-- L ! ! +4umm_A ! +---1 ----KGVG--RG-- L +------5 +4tnt_B ! ! --ECKGAG--KTRG L ! ! +4aa6_B +------6 +-----------2 ----KGVT--RG-- L ! ! +5emc_A ! ! --ECKGAGKGRG-- L --7 ! +1hcq_E ! +-----------------3 --ECKGAG--RG-- L ! +4ond_A ! ----KGVT--RG-- L +-------------------------2c7a_B |
> 2hdc_A:STRUCTURE OF TRANSCRIPTION FACTOR GENESIS/DNA COMPLEX
--------------NAST--RGHT--STLT-------- L +---7cby_C +--------2 ----ST----------NAST--RTHT--STLT------ L ! ! +4lg0_A +----3 +---1 --------------NAST--RGHT----------RTRA L ! ! +1vtn_C +----4 ! RTLA--NTHGTTET--YTRG------------------ L ! ! +------------1f4k_B --5 ! ----ST----------NAST--RTHT--ST-------- L ! +-----------------3l2c_A ! ------------------RC----YG------KT---- +----------------------2acj_B |
> 2hos_A:PHAGE-SELECTED HOMEODOMAIN BOUND TO UNMODIFIED DNA
--QTVAQTNA------ L +8osb_E +--1 ----VTKGNA--KA-- L ! +2lkx_A +-------------3 RT--NT--NAIARG-- L ! ! +4cyc_B ! +--2 ----NCITNARGRG-- L +---5 +6fqq_E ! ! ----IAQCNAMG---- L ! ! +----1b72_A +----6 +-----------4 ----IAQCNAYC---- L ! ! +----3rkq_B +-7 ! ----NCICRG------ L ! ! +--------------------4xrm_B --8 ! ----VTCCNAQA--RT L ! +-------------------------8g87_X ! ----------YCFAKC L +--------------------------6pe2_B |
> 2ih2_D:CRYSTAL STRUCTURE OF THE ADENINE-SPECIFIC DNA METHYLTRANSFERASE M.TAQI COMPLEXED WITH THE COFACTOR ANALOG AETA AND A 10 BP DNA CONTAINING 5-METHYLPYRIMIDIN-2(1H)-ONE AT THE TARGET BASE PARTNER POSITION
> 2irf_L:CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.
HT----ATNTRGCT----SC L +--------8hcm_A +--------------------1 --DCKTRG----RGYA---- L +-2 +--------3zp5_A ! ! ------NASTRTHTNTSTLT L --3 +-----------------------------3co6_C ! --DCKTRGST--RGYC---- L +-----------------------------4uno_A |
> 2isz_B:CRYSTAL STRUCTURE OF A TWO-DOMAIN IDER-DNA COMPLEX CRYSTAL FORM I
--QT--PTAT--TT------------YT---- +8pw0_A +----------1 ------RGSTRTSTHG--------RA------ L ! +3zpl_B +-----3 ----------------YG-------------- ! ! +--3eyi_B +------4 +-------2 --------------RCYG----KT-------- ! ! +--2acj_B --5 ! TT------KATTQTTGLTRTKA------FTYT L ! +----------------2p7c_B ! ----DCLT--AGTTRG--RG------------ L +-----------------------5h3r_A |
> 2ld5_A:SOLUTION NMR-DERIVED COMPLEX STRUCTURE OF HOXA13 DNA BINDING DOMAIN BOUND TO DNA
--YAQTNAAARG-- L +---6wig_A +-------------------------1 --NCITNARGRG-- L +-2 +---6fqq_E ! ! RTNCICNARGRG-- L --3 +-----------------------------6fqp_B ! ----YANC--NAKG L +-----------------------------4j19_B |
> 2lkx_A:NMR STRUCTURE OF THE HOMEODOMAIN OF PITX2 IN COMPLEX WITH A TAATCC DNA BINDING SITE
RCRT------YANC--NAKG-- L +4j19_B +-1 ----RT------NT--NAIARG L +-----------------2 +4cyc_B ! ! ------------NCITNARGRG L --3 +-6fqq_E ! ------YTVCKGDCKC------ L +-------------------2qhb_A |
> 2nll_B:RETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DNA-BINDING DOMAIN HETERODIMER BOUND TO THYROID RESPONSE ELEMENT DNA
CAECKG--KGRGRT L +----1cit_A +-------------3 --EAKG--KTRG-- L ! ! +4umm_A ! +----1 ----KGVG--RG-- L ! +4tnt_B +------5 ----KGVT--RG-- L ! ! +5emc_A ! ! +---------------2 --ECKGAGKGRG-- L +-6 +--4 +1hcq_E ! ! ! --ECKGAGKTRG-- L ! ! +---------------4aa6_B --7 ! ----KGVT--RG-- L ! +-------------------------2c7a_B ! --ECKGAG--RG-- L +--------------------------4ond_A |
> 2o6g_G:CRYSTAL STRUCTURE OF IRF-3 BOUND TO THE INTERFERON-B ENHANCER
HT------ATNTRGCT----SC L +--------8hcm_A +--------------------1 --DCKT----RG--RGYA---- L +-2 +--------3zp5_A ! ! --------NASTRTHTNTSTLT L +-3 +-----------------------------3co6_C ! ! ------DCST--RGHGNTST-- L --4 +-----------------------------7yzb_A ! --DCKT--RGST--RGYC---- L +-----------------------------4uno_A |
> 2p5l_D:CRYSTAL STRUCTURE OF A DIMER OF N-TERMINAL DOMAINS OF AHRC IN COMPLEX WITH AN 18BP DNA OPERATOR SITE
TTKATG----LTRT--KAFTYT L +--------2p7c_B +--------------------3 --------NAHT--ST------ L ! ! +------1vtn_C ! +-1 ------NASTHT--ST------ L +-4 +------4lg0_A ! ! --------NAHT---------- L ! ! +------7cby_C --5 +----------------------2 ------NASTHT--ST------ L ! +------3l2c_A ! ----------YG---------- +-----------------------------3eyi_B |
> 2p7c_B:SOLUTION STRUCTURE OF THE BACILLUS LICHENIFORMIS BLAI MONOMERIC FORM IN COMPLEX WITH THE BLAP HALF-OPERATOR.
LT--NTHG--RTYTPT--------------------RT L +--------6qil_A +--------4 --------DCKT--RG----RGYA----KA-------- L ! +--------5jvt_A +-------5 ------------NGSA--RGHG--SC------------ L ! ! +6el8_A ! ! +--1 ------------NAST--RGHT--STFT---------- L ! +--------------2 +1vtn_C +---6 ! --ST--------NAST--RTHT--STLT---------- L ! ! +--4lg0_A ! ! --------------RC----YG--------KT------ +-7 ! +----2acj_B ! ! +--------------------3 ----STRGQTQAST----------------HG----KT L ! ! +----7t8k_B +-8 ! --------------------------------KGKG-- L ! ! +-----------------------------5xfq_A --9 ! ----------STTAQC----ST---------------- ! +-----------------------------8b4b_W ! --------KGTGKANGYAST------------------ L +-----------------------------1zlk_A |
> 2pi0_B:CRYSTAL STRUCTURE OF IRF-3 BOUND TO THE PRDIII-I REGULATORY ELEMENT OF THE HUMAN INTERFERON-B ENHANCER
HTLT--------RGNT--RGSTAT--RA-- L +-----------------------------2o6g_G +-1 ----------NAST----RTHT--STLT-- L +-2 +-----------------------------4lg0_A ! ! ----ECKT----RGAT-------------- L +-3 +-----------------------------1pue_E ! ! ------DCKT----RG----RGYA----KA L +-4 +-----------------------------5jvt_A ! ! ------QCKT----RGAT--RGNT------ L --5 +-----------------------------8smh_F ! ------DCKT----RGST--RGYA------ L +-----------------------------4bnc_A |
> 2qby_A:CRYSTAL STRUCTURE OF A HETERODIMER OF CDC6/ORC1 INITIATORS BOUND TO ORIGIN DNA (FROM S. SOLFATARICUS)
----------TTKATTQTTG--LTRT----KAFTYT L +-----------------------------2p7c_B +-1 ------------------NASTHT--STLT------ L +-2 +-----------------------------7cby_C ! ! ----------------------YG------------ --3 +-----------------------------3eyi_B ! NGSGWGFARA-------------------------- L +-----------------------------7aud_E |
> 2qhb_A:CRYSTAL STRUCTURE OF NGTRF COMPLEXED WITH TELOMERIC DNA
RART------VTKG--KA-- L +-2lkx_A +---------------------------1 ----RT----NT--NAIARG L +-2 +-4cyc_B ! ! --RT------IAQCNAMG-- L --3 +-----------------------------1b72_A ! ------RGDTVTSTRG---- L +-----------------------------6lxn_A |
> 2stt_A:SOLUTION NMR STRUCTURE OF THE HUMAN ETS1/DNA COMPLEX, 25 STRUCTURES
ECKTRGATRGNT---- L +-----------------------------1pue_E +-2 DCKTRG--RGYA--KA L ! +-----------------------------5jvt_A +-3 DCKTRGSTRGYA---- L ! ! +-------------4bnc_A --4 +---------------1 ----RGNT----RA-- L ! +-------------2o6g_G ! QCKTRGATRGNT---- L +-----------------------------8smh_F |
> 2uzk_A:CRYSTAL STRUCTURE OF THE HUMAN FOXO3A-DBD BOUND TO DNA
----ST------NASTRTHT--STLT---------- L +4lg0_A +--------------------------1 ------------NASTRGHT--STFT---------- L ! +1vtn_C ! ----ST------NASTRTHT--ST------------ L ! +---3l2c_A ! +-----3 ------------NASTRGHT--STLT---------- L ! +-------4 +---7cby_C --8 ! ! --LA--NTTTETYTRG-------------------- L ! +-5 +---------1f4k_B ! ! ! TT------KATTQTTG--LTRT----KA----FTYT L ! +---6 +-----------------2p7c_B ! ! ! --------STRTSTHG--------------RA---- L ! ! ! +-3zpl_B +--7 +-----------------2 --------------RC--YG--------KT------ ! +-2acj_B ! ------------RGNTRGSTAT--RA---------- L +-----------------------2o6g_G |
> 2v1u_A:STRUCTURE OF THE AEROPYRUM PERNIX ORC1 PROTEIN IN COMPLEX WITH DNA
RT--LANTHGTTETYTRG---------------------- L +1f4k_B +---------------------1 --------------NAST--RGHT--STFT--------RT L ! +1vtn_C ! ----------------NAST--HT--STLT---------- L --5 +-----7cby_C ! +---------2 --------------NAST--RTHT--STLT---------- L ! ! +-----4lg0_A +-----4 --TT------KATTQTTG----LTRT----KA--FTYT-- L ! +-----2p7c_B +---------3 ----------------RC----YG--------KT------ +-----2acj_B |
> 2xhb_A:CRYSTAL STRUCTURE OF DNA POLYMERASE FROM THERMOCOCCUS GORGONARIUS IN COMPLEX WITH HYPOXANTHINE-CONTAINING DNA
> 2xro_E:CRYSTAL STRUCTURE OF TTGV IN COMPLEX WITH ITS DNA OPERATOR
LTRTSGTGQTRG------------------ L +-------------------2xro_E +----1 ----------RCYG------KT-------- +-2 +-------------------2acj_B ! ! ------------YG---------------- +-3 +------------------------3eyi_B ! ! TT--KATTQTTGLTRTKA----FTYT---- L --4 +--------------------------2p7c_B ! ----------NC------IT--NA--RGRG L +---------------------------6fqq_E |
> 2z33_A:SOLUTION STRUCTURE OF THE DNA COMPLEX OF PHOB DNA- BINDING/TRANSACTIVATION DOMAIN
--RGTCDCVA----RGRC------RC L +----------8hih_Q +------------------2 --------RC------------KT-- +-4 +----------2acj_B ! ! --HT--RTITYT-------------- L ! +-----------------------------4kfc_B +-5 ----STTAQC----ST---------- ! ! +8b4b_W ! ! +--------------1 --------NC----ITNARGRG---- L +-6 +--------------3 +6fqq_E ! ! ! --------NT------NAIARG---- L ! ! +--------------4cyc_B --7 ! LG--TAKGTA----HTRG-------- L ! +-----------------------------6jhe_A ! ------NGSA--RG------------ L +-----------------------------6el8_A |
> 3aaf_B:STRUCTURE OF WRN RQC DOMAIN BOUND TO DOUBLE-STRANDED DNA
TT------KATTQTTG--LTRT----KA--YT-- L +-----2p7c_B +----------2 --------------RC--YG--------KT---- ! +-----2acj_B +--------5 ------------NASTRGHT--STLT-------- L ! ! +7cby_C ! ! +----1 ------------NASTRGHT--STFT------RA L ! +----------3 +1vtn_C +---6 ! ------------NASTRTHT--STLT-------- L ! ! +-----4lg0_A ! ! ------------NASTRTHT--ST---------- L --7 ! +-----------3l2c_A ! +-------------4 --LANTHGTTETYTRG------------------ L ! +-----------1f4k_B ! ------------------YG-------------- +-----------------------------3eyi_B |
> 3cbb_A:CRYSTAL STRUCTURE OF HEPATOCYTE NUCLEAR FACTOR 4ALPHA IN COMPLEX WITH DNA: DIABETES GENE PRODUCT
CAECKG--KGRG-- L +----1cit_A +-------------4 --EAKG--KTRG-- L ! ! +4umm_A ! +----1 ----KGVG--RG-- L ! +4tnt_B +------5 ----KGVT--RG-- L ! ! +5emc_A ! ! +-2 --ECKGAGKGRG-- L +-6 +----------------3 +1hcq_E ! ! ! --ECKGAG--KTRG L ! ! +-4aa6_B --7 ! ----KGVT--RG-- L ! +-------------------------2c7a_B ! --ECKGAG--RG-- L +--------------------------4ond_A |
> 3co6_C:CRYSTAL STRUCTURE OF FOXO1 DBD BOUND TO DBE1 DNA
--------NAST--RTHT--STLT---------- L +4lg0_A +--------------------1 --------NAST--RGHT--STFT---------- L +------6 +1vtn_C ! ! --------------------------KGKG---- L ! +--------------------5xfq_A ! --------NAST--RTHT--ST------------ L ! +---3l2c_A ! +------3 --------NAST--RGHT--STLT---------- L --9 +------4 +---7cby_C ! ! ! TT--KATTQTTG----LTRT----KA----FT-- L ! +----5 +----------2p7c_B ! ! ! --------RGNT--RGSTAT--RA---------- L ! +----7 +-----------------2o6g_G ! ! ! --RGSTRTSTHG--------------------RA L ! ! ! +-3zpl_B +-8 +--------------------2 ----------RC----YG--------KT------ ! +-2acj_B ! ------KT--RGAT--RGNT-------------- L +---------------------------8smh_F |
> 3cro_R:THE PHAGE 434 CRO/OR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTION
QTET--QASG--------ITNG-- L +------------------------7jvt_D +----2 --SGAAKGSGYGST--RT------ L ! ! +---3zkc_A +-3 +--------------------1 ----NTQASAHTSAQT----TTPG L ! ! +---8pi8_B --4 ! ----SGKGSCQTSTRG-------- L ! +-----------------------------6w1a_A ! ----SGQATG--CARG-------- L +-----------------------------8g87_X |
> 3eyi_B:THE CRYSTAL STRUCTURE OF THE SECOND Z-DNA BINDING DOMAIN OF HUMAN DAI (ZBP1) IN COMPLEX WITH Z-DNA
--LTNTHG--RT--YTPT----------RT-- L +-----------------6qil_A +-----------2 ----STRGQTQA--ST----------HG--KT L ! ! +----7t8k_B +-3 +------------1 ----------------RC----YG--KT---- ! ! +----2acj_B +-4 ! --------HT----RTITYT------------ L ! ! +-----------------------------4kfc_B +-5 ! --------ST--TAQC----ST---------- ! ! +-----------------------------8b4b_W +-6 ! ------KGTG--KANGYA--ST---------- L ! ! +-----------------------------1zlk_A --7 ! LG------TA--KGTA----HTRG-------- L ! +-----------------------------6jhe_A ! --------------NGSA--RGHGSC------ L +-----------------------------6el8_A |
> 3f27_D:STRUCTURE OF SOX17 BOUND TO DNA
RTNTFTMARANGAC--STYA L +4s2q_D +-1 --NAFTIARC--SGICSTYA L +------------------2 +1hry_A ! ! RTSAYCMT--FT-------- L --3 +-1j5n_A ! RTNTFTMARANASC--STYA L +--------------------1o4x_B |
> 3g73_A:STRUCTURE OF THE FOXM1 DNA BINDING
--------------NAST--RGHT--STLT-------- L +-7cby_C +----1 --------------NAST--RGHT--STFT-------- L +--------------3 +-1vtn_C ! ! --------------NAST--RTHT--STLT-------- L ! +------4lg0_A +--7 --TT------KATTQTTG----LTRT----KA--FTYT L ! ! +-----------------2p7c_B ! +--5 ----------STRTSTHG----------------RA-- L ! ! +3zpl_B +---8 +----------------2 ----------------RC----YG--------KT---- ! ! +2acj_B ! ! --------------NAST--RTHT--ST---------- L ! ! +----------3l2c_A +-9 ! +----------4 --------------RGNT--RGSTAT--RA-------- L ! ! +--6 +----------2o6g_G ! ! ! RT--LANTHGTTETYTRG-------------------- L -10 ! +---------------------1f4k_B ! ! ----------------------------------KG-- L ! +----------------------------5xfq_A ! ------------KT--RGAT--RGNT------------ L +----------------------------8smh_F |
> 3g9m_B:GR DNA-BINDING DOMAIN:SGK 16BP COMPLEX-44
----KGVT--RG--RC L +-----------------------------2c7a_B ! --EAKG--KTRG---- L ! +4umm_A ! +-------------------1 ----KGVG--RG---- L --7 ! +4tnt_B ! +--5 ----KGVT--RG---- L ! ! ! +5emc_A ! ! ! +-2 --ECKGAGKGRG---- L ! ! +------------------3 +1hcq_E +------6 ! --ECKGAG--KTRG-- L ! +4aa6_B ! CAECKG--KGRG---- L ! +-----1cit_A +----------------4 --ECKGAG--RG---- L +-----4ond_A |
> 3hts_B:HEAT SHOCK TRANSCRIPTION FACTOR/DNA COMPLEX
----DCKTRGYA---- L +4bnc_A +---------------1 ----DCKTRGYAKA-- L +------------2 +5jvt_A ! ! ----ECKTRGNT---- L +-3 +----------------1pue_E ! ! ----QAKTRGNT---- L --4 +-----------------------------8ee9_F ! LTRTYTPT------RT L +-----------------------------6qil_A |
> 3jtg_A:CRYSTAL STRUCTURE OF MOUSE ELF3 C-TERMINAL DNA-BINDING DOMAIN IN COMPLEX WITH TYPE II TGF-BETA RECEPTOR PROMOTER DNA
QCKT--RGAT--RGNT------ L +-----------------------------8smh_F +-1 ECKT--RGAT--RGNT------ L +-2 +-----------------------------1pue_E ! ! DCKT--RG----RGYA----KA L +-3 +-----------------------------5jvt_A ! ! DCKT--RGST--RGYA------ L --4 +-----------------------------4bnc_A ! ----NAST--RGHT--STFT-- L +-----------------------------1vtn_C |
> 3l2c_A:CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF FOXO4 BOUND TO DNA
------ST------NAST--RTHT--STLT---- L +4lg0_A +------------------------1 --------------NAST--RGHT--STFT---- L ! +1vtn_C ! ------ST------NAST--RTHT--ST------ L ! +--3l2c_A ! +------2 --------------NAST--RGHT--STLT---- L --7 +-----3 +--7cby_C ! ! ! ------------RTSTHG--------------RA L ! +---4 +---------3zpl_B ! ! ! RT--LA--HGTTETYTRG---------------- L ! +--5 +---------------1f4k_B ! ! ! --TT------KATTQTTG----LTRT----KA-- L +-6 +-------------------2p7c_B ! ----------------RGNTRGSTAT--RA---- L +----------------------2o6g_G |
> 3q5f_A:CRYSTAL STRUCTURE OF THE SALMONELLA TRANSCRIPTIONAL REGULATOR SLYA IN COMPLEX WITH DNA
----RGSTRTSTHG--------RA---- L +---------------3zpl_B +-----2 --DCLT--AGTTRG--RG----RA---- L ! ! +5h3r_A +-------3 +---------------1 ------------RCYG----KT------ ! ! +2acj_B --4 ! TT----KATTQTTGLTRTKA----FTYT L ! +---------------------2p7c_B ! --------------YG------------ +-----------------------------3eyi_B |
> 3rkq_B:NKX2.5 HOMEODOMAIN DIMER BOUND TO ANF-242 DNA
RCRT------------VTQTNA--RG L +---8ejp_B +-----------------2 ----RT----------NT--NAIARG L ! ! +4cyc_B --3 +---1 ----------------NCITNARGRG L ! +6fqq_E ! ------STRGQTQAST---------- L +---------------------7t8k_B |
> 3u2b_C:STRUCTURE OF THE SOX4 HMG DOMAIN BOUND TO DNA
RTNTFTMARANGAC--STYA L +4s2q_D +-1 --NAFTIARC--SGICSTYA L +---------------------------2 +1hry_A ! ! RTSAYCMT--FT-------- L --3 +-1j5n_A ! RTNTFTMARANASC--STYA L +-----------------------------1o4x_B |
> 3upu_A:CRYSTAL STRUCTURE OF THE T4 PHAGE SF1B HELICASE DDA
HTNTPT----FT------DT------VT--PT--FTFTSTITYTHTYT-- L +-------------3upu_A +----------1 HT--LT--------------------VT----------------HT--FT L +-3 +-------------7otj_B ! ! ------FT--------DT----------YT--WTRT-------------- L +-4 +------------------------2pjr_A ! ! --------NT--AGRG--QGEG---------------------------- L ! ! +-----------------8btg_B --5 +--------2 ----------------------DTNT------------------------ ! +-----------------7z6h_K ! ------------------TA--------------HA-------------- L +---------------------------3kqh_B |
> 3wkj_D:THE NUCLEOSOME CONTAINING HUMAN TSH2B
> 3x1t_G:CRYSTAL STRUCTURE OF NUCLEOSOME CORE PARTICLE CONSISTING OF MOUSE TESTIS SPECIFIC HISTONE VARIANTS H2AA AND H2BA
> 3x1t_H:CRYSTAL STRUCTURE OF NUCLEOSOME CORE PARTICLE CONSISTING OF MOUSE TESTIS SPECIFIC HISTONE VARIANTS H2AA AND H2BA
> 3zkc_A:CRYSTAL STRUCTURE OF THE MASTER REGULATOR FOR BIOFILM FORMATION SINR IN COMPLEX WITH DNA.
--SGAAKGSGYGST--RTQG---- L +3zkc_A +--------------1 QTET--QASG--------ITNG-- L +-----2 +7jvt_D ! ! ----SGKGSCQTSTRG-------- L --3 +--------------6w1a_A ! ----NTQASAHTSAQT----TTPG L +--------------------8pi8_B |
> 3zp5_A:CRYSTAL STRUCTURE OF THE DNA BINDING ETS DOMAIN OF THE HUMAN PROTEIN FEV IN COMPLEX WITH DNA
------DCKT--RG----RGYA----KA---- L +-----------------------------5jvt_A ! ------DCKT--RGST--RGYA---------- L +-5 +--4bnc_A ! ! +------------------1 ------ECKT--RGAT--RGNT---------- L ! +-------3 +--1pue_E +-6 ! ----------RGNT--RGSTAT--RA------ L ! ! +---------------------2o6g_G ! ! ------QCKT--RGAT--RGNT---------- L +-7 +-----------------------------8smh_F ! ! --KTHG-------------------------- ! ! +--------5hdn_C ! ! +------------2 ------NCTTNA------VTNT---------- L --8 +-------4 +--------1pp7_U ! ! TT----KATTQTTG----LTRT----KAFTYT L ! +---------------------2p7c_B ! ----------NAST--RGHT--STFT------ L +-----------------------------1vtn_C |
> 3zpl_B:CRYSTAL STRUCTURE OF SCO3205, A MARR FAMILY TRANSCRIPTIONAL REGULATOR FROM STREPTOMYCES COELICOLOR, IN COMPLEX WITH DNA
NASTRGHTSTFT-- L +------1vtn_C +-------------1 NASTRTHTSTLT-- L +--------2 +------4lg0_A ! ! --RC--YG----KT --3 +--------------------2acj_B ! NGSARGHGSC---- L +-----------------------------6el8_A |
> 4abt_B:CRYSTAL STRUCTURE OF TYPE IIF RESTRICTION ENDONUCLEASE NGOMIV WITH COGNATE UNCLEAVED DNA
> 4aik_A:CRYSTAL STRUCTURE OF ROVA FROM YERSINIA IN COMPLEX WITH AN INVASIN PROMOTER FRAGMENT
----RGSTRTSTHG----------RA-- L +---------------3zpl_B +-----2 --DCLT--AGTTRG----RG----RA-- L ! ! +5h3r_A +-------3 +---------------1 ------------RC--YG----KT---- ! ! +2acj_B +-4 ! TT----KATTQTTG--LTRTKA--FTYT L ! ! +---------------------2p7c_B --5 ! ----------------YG---------- ! +-----------------------------3eyi_B ! ----------NCTTNAVTNT-------- L +-----------------------------1pp7_U |
> 4awl_B:THE NF-Y TRANSCRIPTION FACTOR IS STRUCTURALLY AND FUNCTIONALLY A SEQUENCE SPECIFIC HISTONE
> 4awl_C:THE NF-Y TRANSCRIPTION FACTOR IS STRUCTURALLY AND FUNCTIONALLY A SEQUENCE SPECIFIC HISTONE
> 4bnc_A:CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF HUMAN ETV1 COMPLEXED WITH DNA
DCKTRGST--RGYA---- L +4bnc_A +---------------1 DCKTRG----RGYA--KA L +-------2 +5jvt_A ! ! ECKTRGAT--RGNT---- L --3 +----------------1pue_E ! ----NT--RGSTATRA-- L +------------------------2o6g_G |
> 4cyc_A:CRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND UBDA MOTIFS
RT----IAQCNAMG---- L +---1b72_A +--4 RT--QTVAQTNA------ L ! ! +8osb_E ! +---1 RT----VTKGNA--KA-- L ! +2lkx_A +-------------5 ------NCICNARGRG-- L ! ! +4xrm_B ! ! +-2 ------NCITNARGRG-- L +----6 +------3 +6fqq_E ! ! ! --RT--NT--NAIARG-- L ! ! +4cyc_B +-7 ! RC----IAQCNAYC---- L ! ! +--------------------3rkq_B --8 ! ------VTCCNAQA--RT L ! +-------------------------8g87_X ! ------------YCFAKC L +--------------------------6pe2_B |
> 4efj_A:CRYSTAL STRUCTURE OF I-GZEII LAGLIDADG HOMING ENDONUCLEASE IN COMPLEX WITH DNA TARGET SITE
SGSTLGQG--YARGKGVT------HC--HG----QTRTDC--SANA----TASA--RGQGRG--------YC----RTEAVG L +4yis_A +---------------1 ST--------RG--RC--ATVC------DC--YARTRGTAWGSAFC--RG----RGRGQG--EASCYT----RTWCQGRTEC L +-------------2 +7rcc_D ! ! SGIGQAKGSC--RGQG--DGTAYC--AT--SCVCKGRG-------------------------------------------- L --3 +---------------6fb0_A ! ----------------------------------------------DTYCNT----------------NG------------ L +-----------------------------1r7m_B |
> 4g92_B:CCAAT-BINDING COMPLEX FROM ASPERGILLUS NIDULANS WITH DNA
> 4g92_C:CCAAT-BINDING COMPLEX FROM ASPERGILLUS NIDULANS WITH DNA
> 4gnx_Z:STRUCTURE OF U. MAYDIS REPLICATION PROTEIN A BOUND TO SSDNA
--------------------------------------KT------NT------------RTIT--WTTTFTMTRTRTDTYTRTRT L +-----------------------------6i52_C +-1 ------------------------------------KG--YTYGRT--KGSGLGKGSGEG----RT--MTFT------KG------ L +-2 +-----------------------------6d6v_D ! ! ----NA-------------------------------------------------------------------------------- L --3 +-----------------------------7ypo_D ! KTNT--TTWTRTRTITYTETRTWTTTNTNTMTQTLT-------------------------------------------------- L +-----------------------------6irq_A |
> 4h0e_A:CRYSTAL STRUCTURE OF MUTANT ORR3 IN COMPLEX WITH NTD OF ARAR
VTSARGTA----RT-------------- L +------------------------6za3_B +-2 --EGRTRGRG--YT-------------- L ! ! +------------------4yo2_A +--3 +-----1 --------------RC----YG--KT-- ! ! +------------------2acj_B +-4 ! --ITRGECSC--SGKG------------ L ! ! +--------------------------5i2d_R +-5 ! --------------------YG------ ! ! +-----------------------------3eyi_B --6 ! ------------NAST--RTHTST---- L ! +-----------------------------3l2c_A ! --RG----DTVT----ST--------WT L +-----------------------------6lxn_A |
> 4hf1_A:CRYSTAL STRUCTURE OF ISCR BOUND TO ITS PROMOTER
--------------RCYG----KT---- +2acj_B +----------------------------1 --VTSARGTA--RT-------------- L +-2 +6za3_B ! ! TT------KATTQTTGLTRTKA--FTYT L +-3 +-----------------------------2p7c_B ! ! ----------------YG---------- --4 +-----------------------------3eyi_B ! ----EGRTRGRGYT-------------- L +-----------------------------4yo2_A |
> 4hly_B:THE COMPLEX CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF VIRF-1 FROM THE ONCOGENIC KSHV WITH DNA
HTLT----RGNT--RGSTATRA-- L +-----------------------------2o6g_G +-1 ----ECKT--RGAT--RGNT---- L +-2 +-----------------------------1pue_E ! ! ----DCKT--RG----RGYA--KA L +-3 +-----------------------------5jvt_A ! ! ----QCKT--RGAT--RGNT---- L --4 +-----------------------------8smh_F ! ----DCKT--RGST--RGYA---- L +-----------------------------4bnc_A |
> 4hqe_A:THE CRYSTAL STRUCTURE OF QSRR-DNA COMPLEX
------RGSTRTSTHG--------------RA-- L +3zpl_B +---1 ------------NASTRGHT--STFT-------- L +-----------3 +1vtn_C ! ! ------------NASTRTHT--STLT-------- L +----6 +---4lg0_A ! ! TT------KATTQTTG--LTRT----KA--FTYT L +---7 +---------------2p7c_B ! ! ------------NASTRGHT--STLT-------- L ! ! +------7cby_C ! +-------------4 ------------NASTRTHT--ST---------- L +----8 +------3l2c_A ! ! ----DCLT--AGTTRG----RG--------RA-- L ! ! +5h3r_A ! ! +--------------2 --------------RC--YG--------KT---- --9 +---------5 +2acj_B ! ! --VTSARGTA--RT-------------------- L ! +--------------6za3_B ! ------------------YG-------------- +-----------------------------3eyi_B |
> 4i2o_B:THE STRUCTURE OF FIXK2 FROM BRADYRHIZOBIUM JAPONICUM
--HT--STAT--STRG---------------- L +--------------------------5lej_A ! TT----KATT--QTTG--LTRTKA----FTYT L +-4 +----2p7c_B ! ! +------------2 --------------------------KG---- L ! +--------3 +----5xfq_A +-5 ! --------------RC--YG----KT------ ! ! +-----------------2acj_B ! ! ----RT----VG--RT---------------- --6 ! +8h40_X ! +----------------------------1 --ITRGECSC--SGKG---------------- L ! +5i2d_R ! ------DCKT----RGSTRGYA---------- L +-----------------------------4bnc_A |
> 4iht_D:CRYSTAL STRUCTURE OF BENM_DBD/BENA SITE 1 DNA COMPLEX
LTNTHG--RTYTPT------------ L +-----------------6qil_A +-----------2 --------------RC--YG--KT-- ! ! +----2acj_B --3 +------------1 --STRGQTQAST--------HG--KT L ! +----7t8k_B ! ------KGTGKANGYAST-------- L +-----------------------------1zlk_A |
> 4iqr_B:MULTI-DOMAIN ORGANIZATION OF THE HNF4ALPHA NUCLEAR RECEPTOR COMPLEX ON DNA
--EAKG--KTRG-- L +4umm_A +-------------------1 ----KGVG--RG-- L ! +4tnt_B +----6 ----KGVT--RG-- L ! ! +5emc_A ! ! +-2 --ECKGAGKGRG-- L ! +------------------3 +1hcq_E ! ! --ECKGAG--KTRG L --7 +4aa6_B ! CAECKG--KGRG-- L ! +----1cit_A ! +------------4 ----KGVT--RG-- L +------5 +----2c7a_B ! --ECKGAG--RG-- L +-----------------4ond_A |
> 4iri_A:AUTO-INHIBITED ERG ETS DOMAIN-DNA COMPLEX
DCKT--RG----RGYA----KA L +-----------------------------5jvt_A ! DCKT--RGST--RGYA------ L +-3 +--4bnc_A ! ! +------------------1 ECKT--RGAT--RGNT------ L ! +-------2 +--1pue_E +-4 ! ------NT--RGSTAT--RA-- L ! ! +---------------------2o6g_G --5 ! QCKT--RGAT--RGNT------ L ! +-----------------------------8smh_F ! ----NAST--RGHT--STFT-- L +-----------------------------1vtn_C |
> 4jcy_A:CRYSTAL STRUCTURE OF THE RESTRICTION-MODIFICATION CONTROLLER PROTEIN C.CSP231I OR OPERATOR COMPLEX
--SG--AAKGSGYG--ST--RTQG---- L +3zkc_A +--------------1 QTET----QASG----------ITNG-- L +-----2 +7jvt_D ! ! ------SGKGSCQT--STRG-------- L --3 +--------------6w1a_A ! ----NTQASAHT--SAQT------TTPG L +--------------------8pi8_B |
> 4kdp_B:TCAR-SSDNA COMPLEX CRYSTAL STRUCTURE REVEALS THE NOVEL SSDNA BINDING MECHANISM OF THE MARR FAMILY PROTEINS
--DCLT--AGTTRG--RG--RA---- L +-----------------------------5h3r_A +-1 ------ST--STHG------RA---- L +-2 +-----------------------------3zpl_B ! ! TT----KATTQTTGLTRTKA--FTYT L --3 +-----------------------------2p7c_B ! --------------YG---------- +-----------------------------3eyi_B |
> 4lln_I:CRYSTAL STRUCTURE OF S. AUREUS MEPR-DNA COMPLEX
--DCLT--AGTTRG----RG----RA---- L +5h3r_A +---------------1 ------------RC--YG----KT------ +-----2 +2acj_B ! ! ----RGSTRTSTHG----------RA---- L +-------3 +---------------3zpl_B ! ! TT----KATTQTTG--LTRTKA----FTYT L +-4 +---------------------2p7c_B ! ! ----RGTCTA--RGNT--------RT---- L +-5 +-----------------------------4fx4_B ! ! ----------------YG------------ --6 +-----------------------------3eyi_B ! --ITRGECSCSGKG---------------- L +-----------------------------5i2d_R |
> 4mhg_A:CRYSTAL STRUCTURE OF ETV6 BOUND TO A SPECIFIC DNA SEQUENCE
DCKT--RG----RGYAKA-- L +-----------------------------5jvt_A ! DCKT--RGST--RGYA---- L +-3 +--4bnc_A ! ! +------------------1 ECKT--RGAT--RGNT---- L ! +-------2 +--1pue_E +-4 ! ----RGNT--RGSTAT---- L ! ! +---------------------2o6g_G --5 ! QCKT--RGAT--RGNT---- L ! +-----------------------------8smh_F ! ------------------KG L +-----------------------------5xfq_A |
> 4mtd_D:ZINC UPTAKE REGULATOR COMPLEXED WITH ZINC AND DNA
--YAKTPTPG----YTRG-------------------- L +--------------4mtd_D +-2 TT------KATT--QTTG----LTRT----KA--FTYT L ! +--------------2p7c_B +---------3 ----------------------YG-------------- ! ! +---3eyi_B +-4 +------------1 ----------------RC----YG--------KT---- ! ! +---2acj_B --5 ! ----RG------VT----STRG---------------- L ! +--------------------------6lxn_A ! ----------------ST--RGHT--STLT-------- L +---------------------------7cby_C |
> 4nhj_A:CRYSTAL STRUCTURE OF KLEBSIELLA PNEUMONIAE RSTA DNA-BINDING DOMAIN IN COMPLEX WITH RSTA BOX
HT--RTITYT------ L +-----------------------------4kfc_B +-1 RGTCDCVA--RGRCRC L +-2 +-----------------------------8hih_Q ! ! --STTAQC--ST---- --3 +-----------------------------8b4b_W ! KGTGKANGYAST---- L +-----------------------------1zlk_A |
> 4o3m_A:TERNARY COMPLEX OF BLOOM'S SYNDROME HELICASE
ETNGRGSG--------ICKCHTTGRCLC-------------- L +-7aud_E +---------------------------1 --------TAHARA---------------------------- L +-2 +-3kqh_B ! ! --------------------------------RCYG----KT +-3 +-----------------------------2acj_B ! ! ------------SGKT-------------------------- --4 +-----------------------------7amv_W ! ----------------------------RAKGSA--QAKT-- L +-----------------------------7d3t_D |
> 4oln_B:ANCESTRAL STEROID RECEPTOR 1 IN COMPLEX WITH ESTROGEN RESPONSE ELEMENT DNA
--EAKG--KTRG L +4umm_A +-------1 ----KGVG--RG L ! +4tnt_B +----------------4 --ECKGAGKTRG L ! ! +4aa6_B ! +------2 ----KGVT--RG L ! +5emc_A --7 --ECKGAGKGRG L ! +1hcq_E ! +--------------3 --ECKGAGRG-- L ! +----5 +4ond_A ! ! ! ----KGVTRG-- L +---6 +---------------2c7a_B ! CAECKG--KGRG L +--------------------1cit_A |
> 4on0_B:CRYSTAL STRUCTURE OF NOLR FROM SINORHIZOBIUM FREDII IN COMPLEX WITH OLIGO AA DNA
--DCLT--AG--TTRG------RG------RA---- L +5h3r_A +---------------1 --------------RC----YG----KT-------- +----2 +2acj_B ! ! ----RGSTRT--STHG--------------RA---- L +--3 +---------------3zpl_B ! ! --------------------YG-------------- +-----4 +--------------------3eyi_B ! ! TT----KATT--QTTG----LTRTKA------FTYT L +-5 +-----------------------2p7c_B ! ! --ITRGECSC--SGKG-------------------- L --6 +-----------------------------5i2d_R ! --RG------VT----STRG--------WT------ L +-----------------------------6lxn_A |
> 4qtr_D:COMPUTATIONAL DESIGN OF CO-ASSEMBLING PROTEIN-DNA NANOWIRES
RT----NT--NAIARG L +4cyc_B +----------------1 ------NCITNARGRG L +----2 +6fqq_E ! ! ------VTQTNA--RG L --3 +----------------8ejp_B ! --STTAQCST------ +---------------------8b4b_W |
> 4r4e_B:STRUCTURE OF GLNR-DNA COMPLEX
> 4rb3_D:CRYSTAL STRUCTURE OF MAGNETOSPIRILLUM GRYPHISWALDENSE MSR-1 FUR-MN2+- FEOAB1 OPERATOR
KA----SG--AT----YTRG---------------------- L +4rb3_D +-------------2 ----YAKTPTPG----YTRG---------------------- L ! +4mtd_D +----7 --TT------KATT--QTTG----LTRT----KA----FTYT L ! ! +-----2p7c_B +----8 +--------6 ------------------RC----YG--------KT------ ! ! +-----2acj_B ! ! --------------VT----STRG------------WT---- L ! +-------------------6lxn_A +---9 ----------------NAST--RGHT--STLT---------- L ! ! +7cby_C ! ! +---3 ----------------NAST--RGHT--STFT---------- L ! ! ! +1vtn_C +-10 +-------------------4 ----------------NAST--RTHT--ST------------ L ! ! ! +3l2c_A ! ! +----1 ----------------NAST--RTHT--STLT---------- L ! ! +4lg0_A -11 ! ------------------NT------NA--IARG-------- L ! +----------------------------4cyc_B ! ----------------QTVA----QTNA-------------- L ! +----8osb_E +-----------------------5 ------------------IA----QCNA--YC---------- L +----3rkq_B |
> 4u0y_B:CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAINS OF YVOA IN COMPLEX WITH PALINDROMIC OPERATOR DNA
--VTSARGTA--RT------ L +-------------------6za3_B +----1 --------------RCYGKT +----2 +-------------------2acj_B ! ! ----ITRGECSCSGKG---- L +-3 +------------------------5i2d_R ! ! RC--EGRTRGRGYT------ L --4 +-----------------------------4yo2_A ! ----------------YG-- +-----------------------------3eyi_B |
> 4umm_E:THE CRYO-EM STRUCTURE OF THE PALINDROMIC DNA-BOUND USP-ECR NUCLEAR RECEPTOR REVEALS AN ASYMMETRIC ORGANIZATION WITH ALLOSTERIC DOMAIN POSITIONING
CAECKG--KGRG-- L +---1cit_A +-------4 --EAKG--KTRG-- L ! ! +4umm_A ! +---1 ----KGVG--RG-- L +------5 +4tnt_B ! ! --ECKGAG--KTRG L ! ! +4aa6_B +------6 +-----------2 ----KGVT--RG-- L ! ! +5emc_A ! ! --ECKGAGKGRG-- L --7 ! +1hcq_E ! +-----------------3 --ECKGAG--RG-- L ! +4ond_A ! ----KGVT--RG-- L +-------------------------2c7a_B |
> 4uno_A:CRYSTAL STRUCTURE OF THE ETS DOMAIN OF HUMAN ETV5 IN COMPLEX WITH DNA
DCKTRGSTRGYA---- L +4bnc_A +---------------1 DCKTRG--RGYA--KA L +-------2 +5jvt_A ! ! ECKTRGATRGNT---- L +----3 +----------------1pue_E ! ! ----RGNTSTATRA-- L --4 +------------------------2o6g_G ! QCKTRGATRGNT---- L +-----------------------------8smh_F |
> 4wuh_B:CRYSTAL STRUCTURE OF E. FAECALIS DNA BINDING DOMAIN LIAR WILD TYPE COMPLEXED WITH 22BP DNA
--KGTG--KANGYAST-- L +-----------------------------1zlk_A +-1 ----ST--TAQC--ST-- +-2 +-----------------------------8b4b_W ! ! NTHG--RT--YTPT---- L --3 +-----------------------------6qil_A ! --RGTC--DCVA--RGRC L +-----------------------------8hih_Q |
> 4wzs_A:CRYSTAL STRUCTURE OF THE MOT1 N-TERMINAL DOMAIN IN COMPLEX WITH TBP AND NC2 BOUND TO A PROMOTER DNA FRAGMENT
> 4wzs_B:CRYSTAL STRUCTURE OF THE MOT1 N-TERMINAL DOMAIN IN COMPLEX WITH TBP AND NC2 BOUND TO A PROMOTER DNA FRAGMENT
> 4xrm_B:HOMODIMER OF TALE TYPE HOMEOBOX TRANSCRIPTION FACTOR MEIS1 COMPLEXES WITH SPECIFIC DNA
--------NCITNARGRG---- L +6fqq_E +----------------1 --RT----NT------NAIARG L +----2 +4cyc_B ! ! RT------VTQTNA--RG---- L --3 +----------------8ejp_B ! ----STTAQCST---------- +---------------------8b4b_W |
> 4xrs_G:HETERODIMERIC COMPLEX OF TRANSCRIPTION FACTORS MEIS1 AND DLX3 ON SPECIFIC DNA
RT------------VTQTNA--RG L +---8ejp_B +-----------------2 --------------NCITNARGRG L ! ! +6fqq_E --3 +---1 --RT----------NT--NAIARG L ! +4cyc_B ! ----STRGQTQAST---------- L +---------------------7t8k_B |
> 4y60_C:STRUCTURE OF SOX18-HMG/PROX1-DNA
RTNTFTMARANGAC--ST--YA L +4s2q_D +-1 --NAFTIARC--SGICST--YA L +--------2 +1hry_A ! ! RTSAYCMT--FT---------- L +------------------3 +-1j5n_A ! ! RTNTFTMARANASC--ST--YA L --4 +----------1o4x_B ! ----------------KTFC-- +-----------------------------8pk1_F |
> 5a78_B:CRYSTAL STRUCTURE OF THE HOMING ENDONUCLEASE I-CVUI IN COMPLEX WITH I- CREI TARGET (C1221) IN THE PRESENCE OF 2 MM MG REVEALING DNA NOT CLEAVED
> 5ay8_E:CRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CONTAINING H3.Y
> 5bpd_A:STRUCTURE OF TRMBL2, AN ARCHAEAL CHROMATIN PROTEIN, SHOWS A NOVEL MODE OF DNA BINDING.
----STQASGATSTQT--------QA-- L +--------------------4on0_B ! ----------------YGRG-------- +--3 +4wcg_A ! ! +-1 VT--HTPTSA--TTKG----------YT L ! +------------------2 +9c4c_G +--4 ! --------------RCYG--KT------ ! ! +-2acj_B --5 ! ETNTSCRGHC--RT--------QA---- L ! +-----------------------4h0e_A ! ------SANCTGTTPT--------RT-- L +--------------------------5hlg_E |
> 5cbz_E:ANCMR DNA BINDING DOMAIN - (+)GRE COMPLEX
----KGVT--RG-- L +-----------------------------2c7a_B ! --EAKG--KTRG-- L ! +4umm_A ! +-------------------1 ----KGVG--RG-- L --7 ! +4tnt_B ! +--5 ----KGVT--RG-- L ! ! ! +5emc_A ! ! ! +-2 --ECKGAGKGRG-- L ! ! +------------------3 +1hcq_E +------6 ! --ECKGAGKT--RG L ! +4aa6_B ! CAECKG--KGRG-- L ! +-----1cit_A +----------------4 --ECKGAG--RG-- L +-----4ond_A |
> 5ciy_A:STRUCTURAL BASIS OF THE RECOGNITION OF H3K36ME3 BY DNMT3B PWWP DOMAIN
NAFA------------------------VA---- +------------------------2y7h_B +----2 ------------------------------VA-- L ! ! +------------5hr4_C +-3 +-----------1 NA----YA----------------YA-------- L ! ! +------------8cxy_C --4 ! ----------------AAEA-------------- ! +-----------------------------2bgw_A ! ----CC--NAVGNGPG----ECNC--VCRCRCRC L +-----------------------------6kdb_D |
> 5d5w_B:CRYSTAL STRUCTURE OF CHAETOMIUM THERMOPHILUM SKN7 WITH HSE DNA
DCKTRGYA L +-----------------------------5jvt_A +-1 QCKTRGNT L +-2 +-----------------------------8smh_F ! ! ECKTRGNT L --3 +-----------------------------1pue_E ! DCKTRGYA L +-----------------------------4bnc_A |
> 5ed4_A:STRUCTURE OF A PHOP-DNA COMPLEX
----RG--DTVTSTRG------WT---- L +------------------------6lxn_A ! ------------YG-------------- +----3 +---3eyi_B ! ! +-------------1 ----------RCYG------KT------ ! +------2 +---2acj_B --4 ! --TTKATTQTTG----LTRT----FTYT L ! +-----------------2p7c_B ! ET-------------------------- L +-----------------------------7aud_E |
> 5emc_A:TRANSCRIPTION FACTOR GRDBD AND SMGRE COMPLEX
CAECKG--KGRG-- L +---1cit_A +------------2 --EAKG--KTRG-- L ! +---4umm_A +-------4 --ECKGAGKGRG-- L ! ! +1hcq_E ! ! +--------------1 --ECKGAG--RG-- L --5 +-3 +4ond_A ! ! --ECKGAGKT--RG L ! +---------------4aa6_B ! ----KGVT--RG-- L +------------------------2c7a_B |
> 5gt0_C:CRYSTAL STRUCTURE OF NUCLEOSOME COMPLEX WITH HUMAN TESTIS-SPECIFIC HISTONE VARIANTS, TH2A
> 5gtc_H:CRYSTAL STRUCTURE OF COMPLEX BETWEEN DMAP-SH CONJUGATED WITH A KAPOSI'S SARCOMA HERPESVIRUS LANA PEPTIDE (5-15) AND NUCLEOSOME CORE PARTICLE
> 5gxq_A:THE CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING H3.6
> 5hdn_C:CRYSTAL STRUCTURE OF HEAT SHOCK FACTOR1-DBD COMPLEX WITH DS-DNA AND TTT
--KTHG---------------- +---------5hdn_C +---------2 ------NCTTNAVTNT------ L +----3 +---------1pp7_U ! ! ------DCKT--RGYAKA---- L +-4 +-------------------5jvt_A ! ! ------DCKT--RGYA------ L ! ! +---4bnc_A +-5 +--------------------1 ------ECKT--RG-------- L ! ! +---1pue_E --6 ! ------QCKT--RGNT------ L ! +--------------------------8smh_F ! TT----KATG--LTRTKAFTYT L +---------------------------2p7c_B |
> 5hlg_E:STRUCTURE OF REDUCED ABFR BOUND TO DNA
----RGSTRTSTHG--------RA---- L +---------------3zpl_B +-----2 --DCLT--AGTTRG--RG----RA---- L ! ! +5h3r_A +-------3 +---------------1 ------------RCYG----KT------ ! ! +2acj_B --4 ! TT----KATTQTTGLTRTKA----FTYT L ! +---------------------2p7c_B ! --------------YG------------ +-----------------------------3eyi_B |
> 5hr4_C:STRUCTURE OF TYPE IIL RESTRICTION-MODIFICATION ENZYME MMEI IN COMPLEX WITH DNA HAS IMPLICATIONS FOR ENGINEERING OF NEW SPECIFICITIES
> 5hso_A:CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS MARR FAMILY PROTEIN RV2887 COMPLEX WITH DNA
----SANCTGTTPT-------- L +------------------------5hlg_E ! VTHTPTSA--TTKG------YT L --3 +9c4c_G ! +-----------------1 ------------RCYG--KT-- +-----2 +2acj_B ! --ST--PTTCSTQC--RA---- L +------------------1ddn_B |
> 5iwi_C:1.98A STRUCTURE OF GSK945237 WITH S.AUREUS DNA GYRASE AND SINGLY NICKED DNA
> 5jlw_D:ANTPHD WITH 15BP DNA DUPLEX R-MONOTHIOATED AT CYTIDINE-8
--RT----------NT--NAIARG L +4cyc_B +----------------1 --------------NCITNARGRG L +----2 +6fqq_E ! ! RT------------VTQTNA--RG L +-3 +----------------8ejp_B ! ! ----------STTAQCST------ --4 +---------------------8b4b_W ! ----STRGQTQAST---------- L +-----------------------7t8k_B |
> 5jvt_A:CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF TRANSCRIPTION FACTOR FLI1 IN COMPLEX WITH AN 11-MER DNA GACCGGAAGTG
--DCKT--RGST--RGYC---- L +-----------------------------4uno_A +-1 --DCKT--RG----RGYA---- L +-2 +-----------------------------3zp5_A ! ! --------------RG--NG-- +-3 +-----------------------------7dci_A ! ! RT------------------YG L --4 +-----------------------------5vfx_A ! ------DCST--RGHGNTST-- L +-----------------------------7yzb_A |
> 5k5q_D:STRUCTURE OF ASPA-DNA COMPLEX: NOVEL CENTROMERE BINDNG PROTEIN- CENTROMERE COMPLEX
--------RGSTRTSTHG----------------RA---- L +3zpl_B +---1 ----------------NAST--HT--STFT---------- L +-----------------3 +1vtn_C ! ! --------------NAST--RTHT--STLT---------- L +-7 +---4lg0_A ! ! ------DCLT--AGTTRG------RG--------RA---- L ! ! +5h3r_A +-8 +---------------------2 ----------------RC----YG--------KT------ ! ! +2acj_B ! ! --TT------KATTQTTG----LTRT----KA----FTYT L ! ! +-------2p7c_B ! +---------------5 ----------DCKT--RG----RGYA----KA-------- L +---9 +-------5jvt_A ! ! ----------------NAST--HT--STLT---------- L ! ! +------7cby_C ! ! +-----------4 --------------NAST--RTHT--ST------------ L +-10 +------6 +------3l2c_A ! ! ! ----LANTHGTTETYTRG---------------------- L ! ! +------------------1f4k_B +-11 ! ----------------------YG---------------- ! ! +-----------------------------3eyi_B -12 ! RC----EGRTRGRGYT------------------------ L ! +-----------------------------4yo2_A ! ----------NCTTNA------VTNT-------------- L +-----------------------------1pp7_U |
> 5kbj_B:STRUCTURE OF REP-DNA COMPLEX
------------YG-------- +-----------------------------3eyi_B +-1 ----KATTQTTGLTRTKAFTYT L +-2 +-----------------------------2p7c_B ! ! --TTSGLTYA------------ L --3 +-----------------------------2nra_C ! RG-------------------- +-----------------------------8ity_V |
> 5kgf_C:STRUCTURAL MODEL OF 53BP1 BOUND TO A UBIQUITYLATED AND METHYLATED NUCLEOSOME, AT 4.5 A RESOLUTION
> 5krb_G:GCNF DNA BINDING DOMAIN - OCT4 DR0 COMPLEX
CAECKG--KGRG--RTRT L +----1cit_A +-------------4 --EAKG--KTRG------ L ! ! +4umm_A ! +----1 ----KGVG--RG------ L ! +4tnt_B +------5 ----KGVT--RG------ L ! ! +5emc_A ! ! +-2 --ECKGAGKGRG------ L +-6 +----------------3 +1hcq_E ! ! ! --ECKGAG--KTRG---- L ! ! +-4aa6_B --7 ! ----KGVT--RG------ L ! +-------------------------2c7a_B ! --ECKGAG--RG------ L +--------------------------4ond_A |
> 5ld2_B:CRYO-EM STRUCTURE OF RECBCD+DNA COMPLEX REVEALING ACTIVATED NUCLEASE DOMAIN
FTTTHT--FTDT----YT--WTRTRTKT------------------ L +-----------------------------2pjr_A +-2 ------PT----DTVT--PT----FT--HT---------------- L ! ! +-------------3upu_A +-3 +---------------1 ------------------VT--------HT---------------- L ! ! +-------------7otj_B +-4 ! --------------------------------RT--IAQTNA---- L ! ! +-----------------------------8eml_B +-5 ! ------------------------------RA--KCITQTNA---- L ! ! +-----------------------------7q3o_C --6 ! --------------------------------RT--TAQCNATT-- L ! +-----------------------------8pmf_A ! --------------------------------RT--VTQTNA--RG L +-----------------------------8ejp_B |
> 5n8o_A:CRYO EM STRUCTURE OF THE CONJUGATIVE RELAXASE TRAI OF THE F/R1 PLASMID SYSTEM
----------------------------VTETRTHTPTVT-- L +-----------------------------6sjf_D +-3 ----------------------------------DT----RT L ! +-----------------------------4n0o_E +-4 --------------KATT------------------------ L ! ! +--------2p7c_B ! +--------------------2 ------RGHTSTFT---------------------------- L +-5 +--------1vtn_C ! ! --SGAT------------------------------------ L ! ! +4rb3_D --6 +----------------------------1 ------------------KTPTPGYTRG-------------- L ! +4mtd_D ! TT---------------------------------------- +-----------------------------8pw0_A |
> 5n8r_B:CRYSTAL STRUCTURE OF DROSOPHILIA DHX36 HELICASE IN COMPLEX WITH GAGCACTGC
RG------QCQCQCSC------YGDGLG--IC--TCLC------EASG--------PGDGSGFT--SGEADG----RGHAPASA L +------5n8r_B +-------------1 ----------------TA--HA------RA--VA--TATATA------------------------------------------ L +----2 +------3kqh_B ! ! ------------------RA----------IC----------KC---------------------------------------- L +-3 +--------------------7aud_E ! ! --STSTRT--------------------------------------------------------ET------STVT-------- L --4 +-------------------------8w0a_C ! ------------------------------------------------YAQTTCQC---------------------------- L +---------------------------5k5q_D |
> 5o6i_A:STRUCTURES AND DYNAMICS OF MESOPHILIC VARIANTS FROM THE HOMING ENDONUCLEASE I-DMOI
YAKGLG--RT----------QG--EC----------------------------------RT----KT L +6x1j_A +-----------------------------1 YGRGRG--------------QG--EC------------------------------------YCNGKG L ! +1r7m_B ! CGRG--ST--TTKARGQTFA--QG--NG----------------HC--SC----LAQGRGQA------ L ! +------------------------4yit_A ! ! SAYCLC--------------------------------NA--RG----RG--DTIC--RG-------- L +-7 +-4 +2fld_B ! ! ! ! +--------------2 SGIG----------RGQG--DG--TA----------------YC--AT--SC--VCKGRG-------- L ! ! ! +---------3 +6fb0_A ! ! +-5 ! SAIAQG--------QA----QA--TC------------------------------------------ L ! ! ! ! +--------------1t9i_B +-8 +--6 ! STIGRG--------LTEC--ST--KG------------------TT--NA------MGRTSC------ L ! ! ! +-------------------------5t2n_A ! ! ! ST--SC----RG--HTRT--TT--MT------------------LT--NC----YA----YA------ L --9 ! +--------------------------7rcf_A ! ! STIT----------QTST--AT--TC--------------------YT--------DTRGST------ L ! +-----------------------------3mxb_B ! ----------------------------ACSTICICRCKCIC--EC----------RC---------- L +-----------------------------1zzi_A |
> 5o9g_E:STRUCTURE OF NUCLEOSOME-CHD1 COMPLEX
> 5o9g_F:STRUCTURE OF NUCLEOSOME-CHD1 COMPLEX
> 5o9g_G:STRUCTURE OF NUCLEOSOME-CHD1 COMPLEX
> 5oqm_7:STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH AND CORE MEDIATOR
----LC------------------------------ +-----------------------------5iy6_V ! EC----------------ITFT----TTIA--RG-- L +-4 +7oo3_b ! ! +----------------------------1 ----------------------SC------RG---- L ! ! ! +6kw4_Y ! +-3 --ET----RGSG------------------IC--KC L +-5 ! +-7aud_E ! ! +--------------------------2 ----------------TA------------------ L ! ! +-3kqh_B +-6 ! --------------------KG--SG---------- ! ! +-----------------------------7amv_W --7 ! ------MT---------------------------- ! +-----------------------------5sva_Z ! ------------FAKAQG------------------ L +-----------------------------8btg_B |
> 5t5k_E:STRUCTURE OF HISTONE-BASED CHROMATIN IN ARCHAEA
> 5ui5_I:CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS SIGMAN BOUND TO PROMOTER DNA
--------------------MGTGQAATSARG L +-----------------------------2p5l_D --3 ETNTSCRGHCRT-------------------- L ! +----------------4h0e_A +------------2 --------------YGRG-------------- ! +4wcg_A +---------------1 ------------RCYG--KT------------ +2acj_B |
> 5v8f_B:STRUCTURAL BASIS OF MCM2-7 REPLICATIVE HELICASE LOADING BY ORC-CDC6 AND CDT1
----STQASGATSTQT------------ L +----------------4on0_B +---2 --------------RC----YG--KT-- ! ! +---2acj_B +---3 +------------1 --------------------YGRG---- ! ! +---4wcg_A +----4 ! ETNTSCRGHC--RT------------QA L ! ! +--------------------4h0e_A --5 ! ----TG--DTVT--RTRG---------- L ! +------------------------8hig_A ! ----TGQAAT--------SARG------ L +-----------------------------2p5l_D |
> 5v8f_E:STRUCTURAL BASIS OF MCM2-7 REPLICATIVE HELICASE LOADING BY ORC-CDC6 AND CDT1
------NAST--HTSTFT-- L +-----------1vtn_C +-----------------1 ------RC----YG----KT +-2 +-----------2acj_B ! ! STTAQC----ST-------- --3 +-----------------------------8b4b_W ! ----NGSA--RGHGSC---- L +-----------------------------6el8_A |
> 5vfx_A:STRUCTURE OF AN ACCESSORY PROTEIN OF THE PCW3 RELAXOSOME IN COMPLEX WITH THE ORIGIN OF TRANSFER (ORIT) DNA
DCKT--RGYA----KA L +-----------------------------5jvt_A +-1 ------RGNT------ L +-2 +-----------------------------8smh_F ! ! NASTRGHT--STFT-- L --3 +-----------------------------1vtn_C ! DCKT--RGYA------ L +-----------------------------4bnc_A |
> 5vmz_A:KAISO (ZBTB33) E535Q MUTANT ZINC FINGER DNA BINDING DOMAIN IN COMPLEX WITH A DOUBLE CPG-METHYLATED DNA RESEMBLING THE SPECIFIC KAISO BINDING SEQUENCE (KBS)
--TTSGRG--QCYC--NTYGQGFTRTYG L +----------5vmz_A ! --SGHG--RGDAETRGRG--DCHG---- L --3 +6vtx_A ! +-------1 RG--ECRA--TGECRGRG----ET---- L +--2 +5wjq_D ! EC----RG--YCKGRGQA----TC---- L +-------8sst_A |
> 5wjq_D:MOUSEZFP568-ZNF2-11 IN COMPLEX WITH DNA
RGSGHGRGYADCTACTST--LTITSTSTHTRG--RG--ECRA--TGECRGRG----ETRGSAECRGRGHGQT L +--------------5wjq_D +---------2 ------------------LA----TT--ECRGYGEC----RG--YCKGRGQA----TC--SC---------- L ! +--------------8sst_A --3 ------------------------------------SGHG--RGDAETRGRG--DCHG-------------- L ! +--6vtx_A +---------------------1 ------------------------------------TTSGRG--QCYC--NTYGQGFT-------------- L +--5vmz_A |
> 5x0y_D:COMPLEX OF SNF2-NUCLEOSOME COMPLEX WITH SNF2 BOUND TO SHL2 OF THE NUCLEOSOME
> 5x11_A:CRYSTAL STRUCTURE OF BACILLUS SUBTILIS PADR IN COMPLEX WITH OPERATOR DNA
--------------NASTRGHT--STFT------ L +-----------------------1vtn_C ! --------------NASTRGHT--STLT------ L ! +-----7cby_C +-----4 +-1 --------------NASTRTHT--STLT------ L ! ! +-------2 +-----4lg0_A ! ! ! ! RT--LANTHGTTETYTRG---------------- L --5 +-------3 +-------1f4k_B ! ! --TT------KATTQTTG--LTRT----KAFTYT L ! +---------------2p7c_B ! --------------------YG------------ +-----------------------------3eyi_B |
> 5x5l_H:CRYSTAL STRUCTURE OF RESPONSE REGULATOR ADER DNA BINDING DOMAIN IN COMPLEX WITH AN INTERCISTRONIC REGION
--RGTC--DCVA----RGRC------RC L +----------8hih_Q +------------------1 ----------------RC----YGKT-- +-2 +----------2acj_B ! ! ----HT----RTITYT------------ L +-3 +-----------------------------4kfc_B ! ! --ST--TAQC----ST------------ +-4 +-----------------------------8b4b_W ! ! ------KGTG--KANGYA--ST------ L --5 +-----------------------------1zlk_A ! LGTA--KGTA----HTRG---------- L +-----------------------------6jhe_A |
> 5xfp_B:BINARY COMPLEX OF PHF1 AND A DOUBLE STRANDED DNA
------------KGKG L +-----------------------------5xfq_A ! NASTRTHTSTLT---- L --3 +4lg0_A ! +--------------1 NASTRGHTSTFT---- L +--------------2 +1vtn_C ! NGSARGHGSC------ L +--------------6el8_A |
> 5xfr_B:TERNARY COMPLEX OF MTF2, DNA AND HISTONE
------------------KGKG L +-----------------------------5xfq_A ! ----NGSARGHG--SC------ L ! +6el8_A --4 +--1 ----NASTRGHT--STFT---- L ! +--------------------2 +1vtn_C ! ! ! ----NASTRTHT--STLT---- L +-----3 +--4lg0_A ! DCKTRGST--RGYA-------- L +-----------------------4bnc_A |
> 5xxp_A:CRYSTAL STRUCTURE OF CBNR_DBD-DNA COMPLEX
LTNTHG--RTYTPT------------ L +--6qil_A +--------------1 ------------NASTRGHTSTFT-- L +-----------2 +--1vtn_C ! ! --------------RC--YG----KT --3 +-----------------2acj_B ! ------KGTGKANGYAST-------- L +-----------------------------1zlk_A |
> 5yi2_J:STRUCTURE OF LACTOCOCCUS LACTIS ZITR, WILD TYPE IN COMPLEX WITH DNA
--------------RC----YG---- +-----------------------------2acj_B +-1 --NTHG--RT--YTPT--------RT L +-2 +-----------------------------6qil_A ! ! LG------TA--KGTA----HTRG-- L +-3 +-----------------------------6jhe_A ! ! ------ST--TAQC----ST------ --4 +-----------------------------8b4b_W ! ------KGTG--KANGYA--ST---- L +-----------------------------1zlk_A |
> 5z3o_E:STRUCTURE OF SNF2-NUCLEOSOME COMPLEX IN ADP STATE
--LC---- +---------8bvw_e +-----------2 RAAANA-- ! +---------1jfi_B +-4 ------RA ! ! +---------7ea8_A ! +-----------3 ------RT --5 +---------5gt0_C ! ------RA ! +7xsx_a +-----------------------1 ------RA +8rbx_M |
> 5z3u_A:STRUCTURE OF SNF2-NUCLEOSOME COMPLEX AT SHL2 IN ADP BEFX STATE
> 5zbx_A:THE CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING HISTONE H3.1 CATD(V76Q, K77D)
> 6a5l_d:RNA POLYMERASE II ELONGATION COMPLEX STALLED AT SHL(-1) OF THE NUCLEOSOME, WITH FOREIGN DNA
> 6a5l_e:RNA POLYMERASE II ELONGATION COMPLEX STALLED AT SHL(-1) OF THE NUCLEOSOME, WITH FOREIGN DNA
> 6a5l_g:RNA POLYMERASE II ELONGATION COMPLEX STALLED AT SHL(-1) OF THE NUCLEOSOME, WITH FOREIGN DNA
> 6ako_C:CRYSTAL STRUCTURE OF FOXC2 DBD BOUND TO DBE2 DNA
--------------NAST--RGHT--STFT----------RT L +--------------------1vtn_C +-6 --------RGSTRTSTHG----------------RA------ L ! ! +3zpl_B ! +-------------------1 --------------RC------YG--------KT-------- +-7 +2acj_B ! ! --TT------KATTQTTG----LTRT----KA----FTYT-- L ! ! +-------2p7c_B ! +--------------4 ----------DCKT--RG----RGYA----KA---------- L ! +-------5jvt_A +--9 --------------NAST--RGHT--STLT------------ L ! ! +-----7cby_C ! ! +-2 --------------NAST--RTHT--STLT------------ L ! ! +---------------3 +-----4lg0_A ! ! ! ! RT--LANTHGTTETYTRG------------------------ L +-10 +-8 +-------1f4k_B ! ! ! --------------NAST--RTHT--ST-------------- L ! ! ! +---------3l2c_A ! ! +-------------5 --------------RGNT--RGSTAT--RA------------ L -11 ! +---------2o6g_G ! ! ------------KT--RGAT--RGNT---------------- L ! +---------------------------8smh_F ! ----------------------YG------------------ +-----------------------------3eyi_B |
> 6buz_A:CRYO-EM STRUCTURE OF CENP-A NUCLEOSOME IN COMPLEX WITH KINETOCHORE PROTEIN CENP-N
> 6buz_H:CRYO-EM STRUCTURE OF CENP-A NUCLEOSOME IN COMPLEX WITH KINETOCHORE PROTEIN CENP-N
> 6c0w_A:CRYO-EM STRUCTURE OF HUMAN KINETOCHORE PROTEIN CENP-N WITH THE CENTROMERIC NUCLEOSOME CONTAINING CENP-A
--------RA +7ea8_A +----------------------2 --------RT ! +7zs9_e ! --------RA ! +7xsx_a +--7 +-------1 ----LC---- ! ! ! +8bvw_e ! ! +-------------4 ----LC--RT L ! ! ! ! +7egp_S ! ! ! +-------3 --------RC +---8 +-6 +7ux9_E ! ! ! RG-------- ! ! ! +---------7v90_H ! ! +-----------5 --------RT +-9 ! +---------5gt0_C ! ! ! --RAAANA-- ! ! +-------------------------1jfi_B -10 ! ----LT---- ! +-----------------------------5zbx_A ! ----IT--RA +-----------------------------7k78_E |
> 6c2s_C:TRANSCRIPTIONAL REPRESSOR, COUR, BOUND TO A 23-MER DNA DUPLEX
----RGSTRTSTHG----------RA---- L +---------------3zpl_B +-----2 --DCLT--AGTTRG----RG----RA---- L ! ! +5h3r_A +-------3 +---------------1 ------------RC--YG----KT------ ! ! +2acj_B +-4 ! TT----KATTQTTG--LTRTKA----FTYT L ! ! +---------------------2p7c_B +-5 ! ----RGTCTA--RGNT--------RT---- L ! ! +-----------------------------4fx4_B --6 ! ----------------YG------------ ! +-----------------------------3eyi_B ! --ITRGECSCSGKG---------------- L +-----------------------------5i2d_R |
> 6cnb_O:YEAST RNA POLYMERASE III INITIAL TRANSCRIBING COMPLEX
STQASGAT--STQT------QA-- L +----------------4on0_B +----2 ------------RC--YGKT---- ! ! +--2acj_B --3 +-------------1 --SANCTG--TTPT--------RT L ! +--5hlg_E ! --RGTG--DTVT--RTRG------ L +---------------------8hig_A |
> 6cnb_P:YEAST RNA POLYMERASE III INITIAL TRANSCRIBING COMPLEX
------------RCYG----KT------ +-----------------------------2acj_B +-1 --------------YG------------ +-2 +-----------------------------3eyi_B ! ! TT----KATTQTTGLTRTKA----FTYT L +-3 +-----------------------------2p7c_B ! ! ----RGSTRTSTHG--------RA---- L --4 +-----------------------------3zpl_B ! --DCLT--AGTTRG--RG----RA---- L +-----------------------------5h3r_A |
> 6cnc_S:YEAST RNA POLYMERASE III OPEN COMPLEX
RGNA--------RT-------- L +--------------8ity_W +--------------1 ----RAKGSA----QAKT---- L +-2 +--------------7d3t_D ! ! --RCRT--VTQTNA----RG-- L +-3 +-----------------------------8ejp_B ! ! ----RT--IAQT--------NA L --4 +-----------------------------8eml_B ! --RART--TAQC---------- L +-----------------------------8pmf_A |
> 6cnd_S:YEAST RNA POLYMERASE III NATURAL OPEN COMPLEX (NOC)
RGNA--------RT------ L +--------------8ity_W +--------------1 ----RAKGSA----QAKT-- L +-2 +--------------7d3t_D ! ! ----RT--IAQTNA------ L --3 +-----------------------------8eml_B ! --RCRT--VTQTNA----RG L +-----------------------------8ejp_B |
> 6cnf_S:YEAST RNA POLYMERASE III ELONGATION COMPLEX
RGNA--------RT-------- L +--------------8ity_W +--------------1 ----RAKGSA----QAKT---- L +-2 +--------------7d3t_D ! ! --RCRT--VTQTNA----RG-- L --3 +-----------------------------8ejp_B ! ----RT--IA----------NA L +-----------------------------8eml_B |
> 6crm_A:CRYSTAL STRUCTURE OF RECQ CATALYTIC CORE FROM C. SAKAZAKII BOUND TO AN UNFOLDED G-QUADRUPLEX
--SC------------ L +-----------------------------6kw4_Y +-2 WTLT------------ L ! +-----------------------------5vhe_A --3 ----NGSARGHGSC-- L ! +-----------6el8_A +-----------------1 ------RC--YG--KT +-----------2acj_B |
> 6dta_A:BACTERIOPHAGE N4 RNA POLYMERASE II ELONGATION COMPLEX 2
TTKATTQTTGLTRT--KA--FTYT L +-----2p7c_B +-----------------------1 --------RCYG------KT---- +-2 +-----2acj_B ! ! ----------YG------------ --3 +-----------------------------3eyi_B ! --------IAQCNAYC-------- L +-----------------------------3rkq_B |
> 6el8_A:CRYSTAL STRUCTURE OF THE FORKHEAD DOMAIN OF HUMAN FOXN1 IN COMPLEX WITH DNA
------------NAST--RGHT--STFT------ L +-----------------1vtn_C +--5 ------------NAST--RGHT--STLT------ L ! ! +-----7cby_C ! +-----------2 ------------NAST--RTHT--STLT------ L +--6 +-----4lg0_A ! ! --------STRTSTHG------------------ L ! ! +3zpl_B +-7 +-------------------1 --------------RC----YG------------ ! ! +2acj_B ! ! ------------NAST--RTHT--ST-------- L ! ! +-----------3l2c_A +---8 +-----------4 RT--LANTTTETYTRG------------------ L ! ! +-----------1f4k_B ! ! --TT----KATTQTTG----LTRT----KAFTYT L +-9 ! +-------2p7c_B ! ! +---------------3 ----------KT--RG----RGYA----KA---- L ! ! +-------5jvt_A +-10 ! ----------KT--RGAT--RGNT---------- L ! ! +---------------------------8smh_F -11 ! --------DCKT--RGST--RGYA---------- L ! +-----------------------------4bnc_A ! --------------------YG------------ +-----------------------------3eyi_B |
> 6fbq_A:CRYSTAL STRUCTURE OF THE HUMAN RETINOID X RECEPTOR DNA-BINDING DOMAIN BOUND TO THE HUMAN MEP DR1 RESPONSE ELEMENT, PH 7.0
--EAKG--KTRG-- L +4umm_A +-------------------1 ----KGVG--RG-- L ! +4tnt_B +----6 --ECKGAG--KTRG L ! ! +--------------4aa6_B ! +----4 ----KGVT--RG-- L ! ! +5emc_A --7 +--------------2 --ECKGAGKGRG-- L ! +1hcq_E ! CAECKG--KGRG-- L ! +----1cit_A ! +------------3 ----KGVT--RG-- L +------5 +----2c7a_B ! --ECKGAG--RG-- L +-----------------4ond_A |
> 6fq8_D:CLASS 3 : TRANSLOCATED NUCLEOSOME
> 6fqp_B:CRYSTAL STRUCTURE OF TALE HOMEOBOX DOMAIN TRANSCRIPTION FACTOR TGIF1 WITH ITS CONSENSUS DNA
----------------NCITNARGRG L +6fqq_E +----------------1 ----RT----------NT--NAIARG L +----2 +4cyc_B ! ! RCRT------------VTQTNA--RG L +-3 +----------------8ejp_B ! ! ------STRGQTQAST---------- L --4 +---------------------7t8k_B ! ------------STTAQCST------ +-----------------------8b4b_W |
> 6fqq_E:CRYSTAL STRUCTURE OF TALE HOMEOBOX DOMAIN TRANSCRIPTION FACTOR TGIF1 DOUBLE ALANINE MUTANT BOUND TO ITS CONSENSUS DNA
----------NT--NAIARG L +-----------------------------4cyc_B +-1 ----------VTQTNA--RG L +-2 +-----------------------------8ejp_B ! ! STRGQTQAST---------- L --3 +-----------------------------7t8k_B ! ------STTAQCST------ +-----------------------------8b4b_W |
> 6fzt_A:CRYSTAL STRUCTURE OF SMAD8_9-MH1 BOUND TO THE GGCGC SITE.
--RGQA--KG L +-----------------------------3kmp_A +-1 --RGQAHTKG L +-2 +-----------------------------5x6g_A ! ! DCRGQC--KG L +-3 +-----------------------------6tbz_A ! ! ----QC--KG --4 +-----------------------------5mey_A ! --RGQC--KG L +-----------------------------5nm9_A |
> 6iod_A:THE STRUCTURE OF UDGX IN COMPLEX WITH SINGLE-STRANDED DNA
DGDG------------LGRG---- +-----------6iod_A +--------1 ------RA----RCQTNT--QGTC L +---2 +-----------2dp6_A ! ! ------------------RG---- +-3 +--------------------1mwi_A ! ! ----KT----CGQT--PG------ --4 +------------------------4z47_A ! --------TT-------------- L +--------------------------4yig_E |
> 6ir9_e:RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH ELF1 AND SPT4/5, STALLED AT SHL(-1) OF THE NUCLEOSOME
> 6iro_A:THE CROSSLINKED COMPLEX OF ISWI-NUCLEOSOME IN THE ADP-BOUND STATE
> 6kw4_Y:THE CLASSB RSC-NUCLEOSOME COMPLEX
EG--SCRG L +-----6kw4_Y +-----------1 ------RC +-------2 +-----6ryu_V ! ! --NG--RC --3 +-----------------8wha_K ! ET------ L +-------------------------7aud_E |
> 6kxv_A:CRYSTAL STRUCTURE OF A NUCLEOSOME CONTAINING LEISHMANIA HISTONE H3
> 6l6q_B:STRUCTURAL BASIS OF NR4A2 HOMODIMERS BINDING TO SELECTIVE NUR- RESPONSIVE ELEMENTS
CAECKG--KGRG--RTRT L +----1cit_A +-------------3 --EAKG--KTRG------ L ! ! +4umm_A ! +----1 ----KGVG--RG------ L ! +4tnt_B +------5 ----KGVT--RG------ L ! ! +5emc_A ! ! +---------------2 --ECKGAGKGRG------ L +-6 +--4 +1hcq_E ! ! ! --ECKGAG--KTRG---- L ! ! +---------------4aa6_B --7 ! ----KGVT--RG------ L ! +-------------------------2c7a_B ! --ECKGAG--RG------ L +--------------------------4ond_A |
> 6lbr_A:CRYSTAL STRUCTURE OF YEAST CDC13 AND SSDNA
FGFGATKTKTFT----YT----------------NTYT--YADGFGSGFGRGET--HALTYT--NTRT----ITMTDTKT--NG--RGKTQGFGKANT--VTLT--------EALATGRTFGDGNGTGYGQGRT L +-----------------6lbr_A +---------1 ------------EGTGYGSGDGKGATFTSGVG--NGYTLGYG------YG------KG--YT------------------RGDGNG--KT--YG--NGAG--RT------------------------------ L +-2 +-----------------1s40_A ! ! ----------------------------------------------------------LTFTRT----------------------------WT--QT--LT-------------------------------- --3 +---------------------------8aas_B ! ------------------KT----------TTAT--------------------FT--RTFT------ITYT----------------------RT--------QTFTDTKT---------------------- L +----------------------------2vw9_A |
> 6lui_A:CRYSTAL STRUCTURE OF THE SAMD1 WH DOMAIN AND DNA COMPLEX
TT----KATTQTTG----LTRT----KA--FTYT L +-----2p7c_B +------------------4 ------------RC----YG--------KT---- ! +-----2acj_B +-6 ------DCKT--RGST--RGYA------------ L ! ! +4bnc_A ! +-----------------------2 ------DCKT--RG----RGYA----KA------ L ! +5jvt_A ! ----------NAST--RTHT--ST---------- L +-8 +3l2c_A ! ! +----1 ----------NAST--RTHT--STLT-------- L ! ! +--------3 +4lg0_A ! ! ! ! ----------NAST--RGHT--STLT-------- L ! ! +-----------5 +----7cby_C +-9 ! ! ! ----------NAST--RGHT--STFT-------- L ! ! +-7 +-------------1vtn_C ! ! ! ------QCKT--RGAT--RGNT------------ L -10 ! +-------------------------8smh_F ! ! --ITRGECSCSGKG-------------------- L ! +----------------------------5i2d_R ! ------------------YG-------------- +-----------------------------3eyi_B |
> 6m4g_G:STRUCTURAL MECHANISM OF NUCLEOSOME DYNAMICS GOVERNED BY HUMAN HISTONE VARIANTS H2A.B AND H2A.Z.2.2
> 6n1p_A:DIHEDRAL OLIGOMERIC COMPLEX OF GYRA N-TERMINAL FRAGMENT WITH DNA, SOLVED BY CRYOEM IN C2 SYMMETRY
------NAST--RGHTST------------------ L +7cby_C +------------------1 ------NAST--RGHTST----FT------------ L +---------2 +1vtn_C ! ! TTKATT--QTTG------LTRT--KA---------- L --3 +-------------------2p7c_B ! --------------------------NTATATSTRG L +-----------------------------1dh3_C |
> 6nce_A:CRYSTAL STRUCTURE OF THE HUMAN FOXN3 DNA BINDING DOMAIN IN COMPLEX WITH A FORKHEAD DNA SEQUENCE
------------NAST--RGHT--STFT---- L +------------1vtn_C +------6 ----------KT--RG----RGYA----KA-- L ! +------------5jvt_A +-------7 --TT----KATTQTTG----LTRT----KAFT L ! ! +-----2p7c_B ! +-------------3 --------------RC----YG---------- ! +-----2acj_B ! ------------NAST--RGHT--STLT---- L ! +-----7cby_C +-10 +-2 ------------NAST--RTHT--STLT---- L ! ! +--------------4 +-----4lg0_A ! ! ! ! RT--LA--TTETYTRG---------------- L ! ! +---8 +-------1f4k_B ! ! ! ! ------------NAST--RTHT--ST------ L ! ! ! ! +-----------3l2c_A +-11 +-9 +----------5 ------RGSTRTSTHG---------------- L ! ! ! +-----------3zpl_B ! ! ! ----------KT--RGAT--RGNT-------- L ! ! +--------------------------8smh_F -12 ! ----------KT--RGST--RGYA-------- L ! ! +--4bnc_A ! +--------------------------1 ----------KT--RGAT--RGNT-------- L ! +--1pue_E ! --------------------YG---------- +-----------------------------3eyi_B |
> 6nqa_A:ACTIVE STATE DOT1L BOUND TO THE H2B-UBIQUITINATED NUCLEOSOME, 1-TO-1 COMPLEX
> 6pax_A:CRYSTAL STRUCTURE OF THE HUMAN PAX-6 PAIRED DOMAIN-DNA COMPLEX REVEALS A GENERAL MODEL FOR PAX PROTEIN-DNA INTERACTIONS
--RC----IAQCNAYC-- L +---3rkq_B +-------------------------2 ----RT--NT--NAIARG L ! +---4cyc_B --3 --RT--QTVAQTNA---- L ! +8osb_E +----------------------------1 RT------IAQCNAMG-- L +1b72_A |
> 6pwe_G:CRYO-EM STRUCTURE OF NUCLEOSOME CORE PARTICLE
> 6pwe_H:CRYO-EM STRUCTURE OF NUCLEOSOME CORE PARTICLE
> 6pww_K:CRYO-EM STRUCTURE OF MLL1 IN COMPLEX WITH RBBP5 AND WDR5 BOUND TO THE NUCLEOSOME
> 6px1_C:SET2 BOUND TO NUCLEOSOME
> 6q2b_B:CRYSTAL STRUCTURE OF PUTATIVE MARR FAMILY TRANSCRIPTIONAL REGULATOR FROM LISTERIA MONOCYTOGENES COMPLEXED WITH 26MER DNA
----SANCTGTTPT------RT-- L +--------------------------5hlg_E ! --STQASGATSTQT------QA-- L ! +--------------------4on0_B +--5 ! VTHTPTSA--TTKG--------YT L ! ! +--3 +9c4c_G ! ! ! ! +---------------1 ------------RCYG--KT---- ! ! ! +---2 +2acj_B --6 +--4 ! --------------YGRG------ ! ! +----------------4wcg_A ! ! --ST--PTTCSTQC--RA------ L ! +-----------------------1ddn_B ! --DCSA--TATT----RT--RA-- L +-----------------------------1z9c_A |
> 6qil_A:THE COMPLEX STRUCTURE OF HSROSR-S1 (VNG0258H/ROSR-S1)
--TT------KATT--QTTG----LTRT----KA----FTYT L +---------------2p7c_B ! ------------------NAST--HT--STLT---------- L +------6 +7cby_C ! ! +----2 ------------------NAST--HT--STFT---------- L ! +---------4 +1vtn_C +--7 ! ----------------NAST--RTHT--STLT---------- L ! ! +-----4lg0_A ! ! ------------------------YG---------------- ! ! +---3eyi_B +-8 +------------------3 ------------------RC----YG--------KT------ ! ! +---2acj_B ! ! ----------------NAST--RTHT--ST------------ L ! ! +-----------3l2c_A +-9 +-------------5 RT--LANTHGTTET--YTRG---------------------- L ! ! +-----------1f4k_B ! ! ----------DCKT----RGST--RGYA-------------- L +-10 ! +4bnc_A ! ! +--------------------------1 ----------DCKT----RG----RGYA----KA-------- L ! ! +5jvt_A -11 ! ----------QCKT----RGAT--RGNT-------------- L ! +---------------------------8smh_F ! ------RG----DTVT----STRG------------WT---- L +-----------------------------6lxn_A |
> 6r25_E:STRUCTURE OF LSD2/NPAC-LINKER/NUCLEOSOME CORE PARTICLE COMPLEX: CLASS 3
> 6r2v_B:ARABIDOPSIS NF-Y/CCAAT-BOX COMPLEX
> 6r2v_C:ARABIDOPSIS NF-Y/CCAAT-BOX COMPLEX
> 6r8y_H:CRYO-EM STRUCTURE OF NCP-6-4PP(-1)-UV-DDB
> 6raz_4:D. MELANOGASTER CMG-DNA, STATE 2B
--------------------------------FTQA---------- +------------6raz_7 +--------1 TTAT--------TT--WT--RTITYTETRTWT----NTMTQTLT-- L +-------2 +------------6irq_A ! ! ----NTMTQTTT--WT--RT-------------------------- L --3 +---------------------8uzt_A ! --------------------------------------------RT +-----------------------------6u0m_6 |
> 6raz_7:D. MELANOGASTER CMG-DNA, STATE 2B
----------------------------------------FTATQA-------- +-----------6raz_7 +-2 RTTTKT----------------------ITYT--RTETWT--------RTQTFT L ! ! +2vw9_A --3 +-----------1 ----------NTMTQTTT--WT--RT---------------------------- L ! +8uzt_A ! ------TTAT--------TT--WT--RTITYTET--RTWT------YTTT---- L +-------------6irq_A |
> 6ryd_F:WUS-HD BOUND TO TGAA DNA
--------YAQTNAAARG L +--------------------6wig_A ! --------NCICNARGRG L +--------3 +6fqp_B ! ! +----------------1 --------NCITNARGRG L ! +---2 +6fqq_E --4 ! ------YANC--NAKG-- L ! +----------------4j19_B ! NGRGKGSGSAQAVC---- L +-----------------------------5no6_N |
> 6see_H:CLASS2A : CENP-A NUCLEOSOME IN COMPLEX WITH CENP-C CENTRAL REGION
> 6sjf_B:CRYO-EM STRUCTURE OF THE RECBCD CHI UNRECOGNISED COMPLEX
RT--RTKTIAQCNA----RT L +-1ig7_A +------2 ----RC--IAQCNAYC---- L ! +-3rkq_B --3 --YART--VTQTNAMTKTRT L ! +1jgg_B +--------1 ----RT--IAQCNAMG---- L +1b72_A |
> 6t7a_H:STRUCTURE OF HUMAN SOX11 TRANSCRIPTION FACTOR IN COMPLEX WITH A NUCLEOSOME
> 6uph_D:STRUCTURE OF A YEAST CENTROMERIC NUCLEOSOME AT 2.7 ANGSTROM RESOLUTION
> 6uwj_A:INTERMEDIATE ENGINEERED VARIANT OF I-ONUI MEGANUCLEASE WITH IMPROVED THERMOSTABILITY AND PARTIALLY ALTERED SPECIFICITY
SGSTLGQG--KTYARGKGVT------HCHG----QTRTDC--SANA--KGSC--ST--TASARGQGRG------YC------RTEAVG L +4yis_A +---------------1 ST--------------RC--ATVC----DC--YARTRGTAWGSA--------FC--RG----RGQG--EASCYT----RTWCQGRTEC L +-------------2 +7rcc_D ! ! SGIGQAKGNCSC--RGQG--DGTAYCAT--SCVCKGRG-------------------------------------------------- L --3 +---------------6fb0_A ! ------------------------------------EC--------DT----------------------------NG---------- L +-----------------------------1r7m_B |
> 6vtx_A:CRYSTAL STRUCTURE OF HUMAN KLF4 ZINC FINGER DNA BINDING DOMAIN IN COMPLEX WITH NANOG DNA
--SGHG--RGDAETRGRG--DCHG L +6vtx_A +------1 RG--ECRA--TGECRGRG----ET L +---------2 +5wjq_D ! ! EC----RG--YCKGRGQA----TC L --3 +-------8sst_A ! --TTSGRG--QCYC--NTYGQGFT L +-----------------5vmz_A |
> 6wg7_G:COORDINATES OF NANR DIMER FITTED IN HEXAMERIC NANR-DNA HETERO-COMPLEX CRYO-EM MAP
--ETNTSCRGHC--RT----------QA L +--------------------4h0e_A ! ----------------RC--YG--KT-- +--------3 +-2acj_B ! ! +--------------1 RT--------TCTGYTRT---------- L ! +---2 +-7vpz_N +-4 ! --------------------YGRG---- ! ! +----------------4wcg_A --5 ! ----------DCKT--RGSTRGYC---- L ! +-----------------------------4uno_A ! ----------DCKT--RG--RGYA---- L +-----------------------------3zp5_A |
> 6wig_A:STRUCTURE OF STENOFOLIA PROTEIN HD DOMAIN BOUND WITH DNA
--RT------QTVAQTNA------ L +8osb_E +------1 RART--------VTKGNA--KA-- L ! +2lkx_A +------------5 ------------NCICNARGRG-- L ! ! +4xrm_B ! ! +-2 ------------NCITNARGRG-- L ! +-----3 +6fqq_E +---------6 ! ----RT------NT--NAIARG-- L ! ! +4cyc_B ! ! --RT--------IAQCNAMG---- L --7 ! +----1b72_A ! +--------------4 --RC--------IAQCNAYC---- L ! +----3rkq_B ! ------RCKG----TTTCATDCKG L +-----------------------------4ix7_B |
> 6x0n_f:BRIDGING OF DOUBLE-STRAND DNA BREAK ACTIVATES PARP2/HPF1 TO MODIFY CHROMATIN
> 6x1j_A:THE HOMING ENDONUCLEASE I-WCAI BOUND TO ITS DNA RECOGNITION SEQUENCE
PTNTYGRGRGQGEC------KTRGVAQC------DTYCNT----NCQC----NGKG-------- L +-----------------------------1r7m_B +-1 ------------RG--------------SA--FC--RG--QGEA----YT------WCQGRTEC L +-2 +-----------------------------7rcc_D ! ! ----------QT----------------SAKG------------------YC------RTEAVG L --3 +-----------------------------4yis_A ! --------------NCKGRA-------------------------------------------- L +-----------------------------2ayg_A |
> 6x59_H:THE MOUSE CGAS CATALYTIC DOMAIN BINDING TO HUMAN ASSEMBLED NUCLEOSOME
> 6y42_B:CRYSTAL STRUCTURE OF RSRR COMPLEXED TO A 39 BASEPAIR DNA FRAGMENT OF THE RSRR PROMOTER
TTKATTQTTG--LTRT----KA--FTYT L +-----2p7c_B +------------1 --------RC--YG--------KT---- +----------2 +-----2acj_B ! ! ------NASTRTHT--STLT-------- L +-3 +------------------4lg0_A ! ! ------------YG-------------- --4 +-----------------------------3eyi_B ! ------NASTRTHT--ST---------- L +-----------------------------3l2c_A |
> 6y5d_H:STRUCTURE OF HUMAN CGAS (K394E) BOUND TO THE NUCLEOSOME
> 6yov_C:OCT4-SOX2-BOUND NUCLEOSOME - SHL+6
> 7at8_D:HISTONE H3 RECOGNITION BY NUCLEOSOME-BOUND PRC2 SUBUNIT EZH2.
> 7b0c_A:[4FE-4S]-NSRR COMPLEXED TO 23-BP HMPA1 OPERATOR FRAGMENT
--------------RC----YG--------KT---- +2acj_B +----------------------------1 --VTSARGTA--RT---------------------- L ! +6za3_B +-3 TT------KATTQTTG----LTRT----KA--FTYT L ! ! +--------2p7c_B +-4 +--------------------2 ------------NAST--RTHT--STLT-------- L ! ! +--------4lg0_A --5 ! --------------------YG-------------- ! +-----------------------------3eyi_B ! --------------NAST--HT--STLT-------- L +-----------------------------7cby_C |
> 7b24_C:DTXR-LIKE IRON-DEPENDENT REGULATOR IDER (P39G VARIANT) COMPLEXED WITH COBALT AND ITS CONSENSUS DNA-BINDING SEQUENCE
TT----KATTQTTGLTRTKA--FTYT L +-----2p7c_B +-----------------------1 ------------RCYG----KT---- +-2 +-----2acj_B ! ! --------------YG---------- +-3 +-----------------------------3eyi_B ! ! --DCLT--AGTTRG--RG-------- L --4 +-----------------------------5h3r_A ! ----RGSTRTSTHG------------ L +-----------------------------3zpl_B |
> 7bhy_A:DNA-BINDING DOMAIN OF DEOR IN COMPLEX WITH THE DNA OPERATOR
RT--LANTHGTTETYTRG-------- L +-----------------------------1f4k_B +-1 ------DCLT--AGTTRG--RG---- L +-2 +-----------------------------5h3r_A ! ! --TT------KATTQTTGLTRT--KA L --3 +-----------------------------2p7c_B ! ----------------------YCFA L +-----------------------------6pe2_B |
> 7bzg_B:STRUCTURE OF BACILLUS SUBTILIS HXLR, WILD TYPE IN COMPLEX WITH FORMALDEHYDE AND DNA
----RGSTRTSTHG--------RA-- L +---------------3zpl_B +-----2 --DCLT--AGTTRG--RG----RA-- L ! ! +5h3r_A +-------3 +---------------1 ------------RCYG----KT---- ! ! +2acj_B +-4 ! ------KATTQTTGLTRTKA--FTYT L ! ! +---------------------2p7c_B --5 ! LANTHGTTETYTRG------------ L ! +-----------------------------1f4k_B ! --------------YG---------- +-----------------------------3eyi_B |
> 7c0j_A:CRYSTAL STRUCTURE OF CHIMERIC MUTANT OF GH5 IN COMPLEX WITH Z-DNA
TT------KATTQTTG----LTRT----KAFTYT L +--------2p7c_B +--------------3 ------------NAST--RGHT--STFT------ L ! +--------1vtn_C +---4 --------------------YG------------ ! ! +---3eyi_B +-5 +-------------------2 --------------RC----YG------------ ! ! +---2acj_B ! ! --VTSARGTA--RT-------------------- L +-6 +---------------------------6za3_B ! ! --------DCKT--RGST--RGYA---------- L ! ! +--4bnc_A +-7 +--------------------------1 --------ECKT--RGAT--RGNT---------- L ! ! +--1pue_E --8 ! ----ITRGECSCSGKG------------------ L ! +-----------------------------5i2d_R ! ----EGRTRGRGYT-------------------- L +-----------------------------4yo2_A |
> 7c9o_B:CRYSTAL STRUCTURE OF DNA-BOUND CCT/NF-YB/YC COMPLEX (HD1CCT/GHD8/OSNF- YC2)
> 7c9o_C:CRYSTAL STRUCTURE OF DNA-BOUND CCT/NF-YB/YC COMPLEX (HD1CCT/GHD8/OSNF- YC2)
> 7cby_C:STRUCTURE OF FOXG1 DNA BINDING DOMAIN BOUND TO DBE2 DNA SITE
----------------NAST--RGHT--STLT---------- L +7cby_C +----1 ----------------NAST--RGHT--STFT--------RT L +--------------3 +1vtn_C ! ! ------ST--------NAST--RTHT--STLT---------- L ! +-----4lg0_A +--7 ----------RGSTRTSTHG--------------RA------ L ! ! +3zpl_B ! ! +----------------2 ----------------RC------YG---------------- ! +--5 +2acj_B ! ! --TT--------KATTQTTG----LTRT----KA--FTYT-- L +---8 +-----------------2p7c_B ! ! ------ST--------NAST--RTHT--ST------------ L ! ! +---------3l2c_A ! ! +----------4 ----------------RGNT--RGSTAT--RA---------- L --9 +--6 +---------2o6g_G ! ! RT--LA--NTHGTTETYTRG---------------------- L ! +--------------------1f4k_B ! --------------KT--RGAT--RGNT-------------- L +---------------------------8smh_F |
> 7ccr_A:STRUCTURE OF THE 2:2 CGAS-NUCLEOSOME COMPLEX
> 7ccr_H:STRUCTURE OF THE 2:2 CGAS-NUCLEOSOME COMPLEX
> 7cvo_A:CRYSTAL STRUCTURE OF ARABIDOPSIS CO CCT DOMAIN IN COMPLEX WITH NF- YB3/YC4 AND FT CORE2 DNA
> 7cvo_B:CRYSTAL STRUCTURE OF ARABIDOPSIS CO CCT DOMAIN IN COMPLEX WITH NF- YB3/YC4 AND FT CORE2 DNA
> 7cvq_F:CRYSTAL STRUCTURE OF ARABIDOPSIS CO CCT DOMAIN IN COMPLEX WITH NF- YB2/YC3 AND FT CORE1 DNA
> 7d1z_H:CRYO-EM STRUCTURE OF SET8-NUCLEOSOME COMPLEX
> 7d3t_D:CRYSTAL STRUCTURE OF OSPHR2 IN COMPLEX WITH DNA
--------NCICNA--RGRG---- L +4xrm_B +-1 --------NCITNA--RGRG---- L +----------------------------3 +6fqq_E ! ! --RT----NT----NA----IARG L ! +4cyc_B ! RT----QTVAQTNA---------- L +-6 +8osb_E ! ! +--2 RT------VTKGNA----KA---- L ! ! +---------4 +2lkx_A ! ! ! ! RT------IAQCNA--MG------ L --7 +----------------5 +--1b72_A ! ! RC------IAQCNA--YC------ L ! +------------3rkq_B ! ----NG--NA-------------- L +-----------------------------2kdz_A |
> 7d69_B:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING GIARDIA HISTONES
> 7d69_D:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING GIARDIA HISTONES
> 7d69_E:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING GIARDIA HISTONES
> 7d69_G:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING GIARDIA HISTONES
> 7dbh_A:THE MOUSE NUCLEOSOME STRUCTURE CONTAINING H3MM18
> 7dci_A:CRYSTAL STRUCTURE OF HSF2 DNA-BINDING DOMAIN IN COMPLEX WITH 2-SITE HSE DNA IN THE HEAD-TO-HEAD ORIENTATION
KTHG---------- +---------5hdn_C +---------1 ----NCTTNAVTNT L +---2 +---------1pp7_U ! ! ----DCKT--RGYA L +-3 +-------------------5jvt_A ! ! ----DCKT--RGYA L +-4 +-----------------------4bnc_A ! ! ----ECKT--RGNT L --5 +-------------------------1pue_E ! ----QCKT--RGNT L +--------------------------8smh_F |
> 7dvv_A:HEME SENSOR PROTEIN PEFR FROM STREPTOCOCCUS AGALACTIAE BOUND TO OPERATOR DNA (28-MER)
----RGSTRTSTHG----------RA---- L +---------------3zpl_B +-----2 --DCLT--AGTTRG----RG----RA---- L ! ! +5h3r_A +-------3 +---------------1 ------------RC--YG----KT------ ! ! +2acj_B +-4 ! TT----KATTQTTG--LTRTKA----FTYT L ! ! +---------------------2p7c_B --5 ! ----------------YG------------ ! +-----------------------------3eyi_B ! ----------NCTTNAVTNT---------- L +-----------------------------1pp7_U |
> 7e8d_H:NSD2 E1099K MUTANT BOUND TO NUCLEOSOME
> 7e9c_A:CRYO-EM STRUCTURE OF THE 1:1 ORC1 BAH DOMAIN IN COMPLEX WITH NUCLEOSOME
> 7e9c_D:CRYO-EM STRUCTURE OF THE 1:1 ORC1 BAH DOMAIN IN COMPLEX WITH NUCLEOSOME
> 7e9c_F:CRYO-EM STRUCTURE OF THE 1:1 ORC1 BAH DOMAIN IN COMPLEX WITH NUCLEOSOME
> 7e9c_G:CRYO-EM STRUCTURE OF THE 1:1 ORC1 BAH DOMAIN IN COMPLEX WITH NUCLEOSOME
> 7ea8_A:HUMAN SETD2 BOUND TO A NUCLEOSOME CONTAINING ONCOHISTONE MUTATIONS
> 7eg6_A:SNF5 FINGER HELIX BOUND TO THE NUCLEOSOME
> 7egp_S:THE STRUCTURE OF SWI/SNF-NUCLEOSOME COMPLEX
> 7el3_B:CRYSTAL STRUCTURE OF HPAR-DNA COMPLEX FROM ACINETOBACTER BAUMANNII
--ET--RGTCTGSTRG----KT-- L +-----------6q2b_B +-----------------2 VT--HTPTSA--TTKG------YT L ! ! +9c4c_G +-3 +----------1 --------------RC--YG---- ! ! +2acj_B --4 ! ------RGTCTA--RGNT--RT-- L ! +-----------------------------4fx4_B ! ----ITRGECSCSGKG-------- L +-----------------------------5i2d_R |
> 7jgr_A:STRUCTURE OF DROSOPHILA ORC BOUND TO DNA (84 BP) AND CDC6
TANAFGNTAGRGFA----QGEG-------------------------------- L +------------------8btg_B +----------1 --------------RC------DTNTRT-------------------------- +-2 +------------------7z6h_K ! ! ----------------RT------------------------------------ L +-3 +-----------------------------8trg_A ! ! ----------------------------STQASGATSTQT------------QA L +-4 +-----------------------------4on0_B ! ! ------------------------------------NAST--RTHTNTSTLT-- L +-5 +-----------------------------3co6_C ! ! --------------------------------DCKT--RG----RGYA------ L --6 +-----------------------------3zp5_A ! --------------------------------DCKT--RGST--RGYC------ L +-----------------------------4uno_A |
> 7jgr_B:STRUCTURE OF DROSOPHILA ORC BOUND TO DNA (84 BP) AND CDC6
--TTKATTQTTG--LTRT----KA--FTYT L +-----2p7c_B +---2 ----------RC--YG--------KT---- +-------------------3 +-----2acj_B ! ! --------NASTRGHT--STFT-------- L +-4 +---------1vtn_C ! ! QT---------------------------- L +-5 +-----------------------------5vhe_A ! ! --------------YG-------------- --6 +-----------------------------3eyi_B ! ----------NT----NA----RG------ L ! +4cyc_B +-----------------------------1 ----------NC--ITNA----RG------ L +6fqq_E |
> 7jgr_D:STRUCTURE OF DROSOPHILA ORC BOUND TO DNA (84 BP) AND CDC6
TTKATTQTTG----LTRT----KA------FTYT-- L +----2p7c_B +-----1 --------------------------KGKG------ L +----3 +----5xfq_A ! ! ------NAST--RGHT--STFT------------RT L +---4 +----------1vtn_C ! ! --------RC----YG--------KT---------- +---5 +---------------2acj_B ! ! --DCKT--RG----RGYA----KA------------ L +-----6 +-------------------5jvt_A ! ! ------NAST--RGHT--STLT-------------- L ! ! +-----7cby_C --7 +-----------------2 ------NAST--RTHT--STLT-------------- L ! +-----4lg0_A ! --DCKT--RGST--RGYA------------------ L +-----------------------------4bnc_A |
> 7jgr_E:STRUCTURE OF DROSOPHILA ORC BOUND TO DNA (84 BP) AND CDC6
------NASTRGHT--STFT------RT L +--------------------1vtn_C +--2 TTKATTQTTG--LTRT----KAFTYT-- L ! ! +-----2p7c_B +-----3 +--------------1 --------RC--YG-------------- ! ! +-----2acj_B --4 ! ------NASTRGHT--STLT-------- L ! +-----------------------7cby_C ! ------------YG-------------- +-----------------------------3eyi_B |
> 7jgr_G:STRUCTURE OF DROSOPHILA ORC BOUND TO DNA (84 BP) AND CDC6
TTKATTQTTG----LTRT----KA--FTYT L +------2p7c_B +-------3 --------RC----YG--------KT---- ! +------2acj_B +---------5 ------NAST--RGHT--STFT-------- L ! ! +------1vtn_C ! +-------4 ------NAST--RTHT--STLT-------- L +---6 +------4lg0_A ! ! --DCKT--RGST--RGYA------------ L ! ! +4bnc_A --7 +-----------------------1 --DCKT--RG----RGYA----KA------ L ! +5jvt_A ! ------NAST--RTHT--ST---------- L ! +---3l2c_A +------------------------2 ------NAST--RGHT--STLT-------- L +---7cby_C |
> 7jps_A:ORC-DNA: HUMAN ORIGIN RECOGNITION COMPLEX (ORC) WITH DNA BOUND IN THE CORE
----------NAST--HT--STFT-------- L +------1vtn_C +-------------3 --ST----NAST--RTHT--STLT-------- L ! +------4lg0_A +---5 TT--KATTQTTG----LTRT----KA--FTYT L ! ! +------2p7c_B ! +-------------2 ----------RC----YG--------KT---- +---6 +------2acj_B ! ! ----DCKT--RGST--RGYA------------ L ! ! +4bnc_A --7 +-----------------------1 ----DCKT--RG----RGYA----KA------ L ! +5jvt_A ! ----------NAST--HT--STLT-------- L ! +-------7cby_C +--------------------4 --------NAST--RTHT--ST---------- L +-------3l2c_A |
> 7jps_D:ORC-DNA: HUMAN ORIGIN RECOGNITION COMPLEX (ORC) WITH DNA BOUND IN THE CORE
RT--LA--NTHGTTETYTRG------------------ L +1f4k_B +----------1 ------------------NAST--HT--STFT------ L ! +1vtn_C +-------3 ----------------NAST--RGHT--STLT------ L ! ! +-----7cby_C +-----4 +----2 ------ST--------NA----RTHT--STLT------ L ! ! +-----4lg0_A +----5 ! --TT--------KATTQTTG----LTRT----KAFTYT L ! ! +------------------2p7c_B --6 ! ----------------NAST--RTHT--ST-------- L ! +------------------------3l2c_A ! ------------------------YG------------ +-----------------------------3eyi_B |
> 7jps_E:ORC-DNA: HUMAN ORIGIN RECOGNITION COMPLEX (ORC) WITH DNA BOUND IN THE CORE
------------------------------RA-- L +-----------------------------2qby_B +-2 AGRGFA--KAQGEG-------------------- L ! ! +------------------8btg_B +-3 +----------1 ------RC------RT------------------ ! ! +------------------7z6h_K +-4 ! ------------------KTRGSTRGYC------ L ! ! +-----------------------------4uno_A --5 ! ----------------RT--------------YG L ! +-----------------------------5vfx_A ! --------------------RC--YG--KT---- +-----------------------------2acj_B |
> 7jsa_J:CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF HUMAN TRANSCRIPTION FACTOR ERF IN THE REDUCED FORM, IN COMPLEX WITH DOUBLE-STRANDED DNA ACCGGAAGTG
----DCKT--RG----RGYA--KA-- L +-----------------------------5jvt_A ! ----DCKT--RGST--RGYA------ L +-4 +--4bnc_A ! ! +------------------1 ----ECKT--RGAT--RGNT------ L ! +-------3 +--1pue_E +-5 ! --------RGNT--RGSTATRA---- L ! ! +---------------------2o6g_G ! ! ----QCKT--RGAT--RGNT------ L +-6 +-----------------------------8smh_F ! ! KTHG---------------------- ! ! +--------5hdn_C --7 +--------------------2 ----NCTTNA------VTNT------ L ! +--------1pp7_U ! ------------------------KG L +-----------------------------5xfq_A |
> 7jzv_N:CRYO-EM STRUCTURE OF THE BRCA1-UBCH5C/BARD1 E3-E2 MODULE BOUND TO A NUCLEOSOME
> 7k5x_H:CRYO-EM STRUCTURE OF A CHROMATOSOME CONTAINING HUMAN LINKER HISTONE H1.0
> 7k60_H:CRYO-EM STRUCTURE OF A CHROMATOSOME CONTAINING HUMAN LINKER HISTONE H1.10
> 7k63_H:CRYO-EM STRUCTURE OF A CHROMATOSOME CONTAINING CHIMERIC LINKER HISTONE GH1.10-NCH1.4
> 7k78_E:ANTIBODY AND NUCLEOSOME COMPLEX
> 7kbd_C:NUCLEOSOME IN INTERPHASE CHROMOSOME FORMED IN XENOPUS EGG EXTRACT (OLIGO FRACTION)
> 7lv9_A:MARSEILLEVIRUS HETEROTRIMERIC (HEXAMERIC) NUCLEOSOME
> 7lvv_B:CRYOEM STRUCTURE DRDV-DNA COMPLEX
> 7lyb_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE IN COMPLEX WITH BRCA1-BARD1-UBCH5C
> 7m1x_C:CRYO-EM STRUCTURE OF NUCLEOSOME CONTAINING MOUSE HISTONE VARIANT H2A.Z
> 7n8n_B:MELBOURNEVIRUS NUCLEOSOME LIKE PARTICLE
> 7nkx_a:RNA POLYMERASE II-SPT4/5-NUCLEOSOME-CHD1 STRUCTURE
> 7nkx_f:RNA POLYMERASE II-SPT4/5-NUCLEOSOME-CHD1 STRUCTURE
> 7on1_e:CENP-A NUCLEOSOME IN COMPLEX WITH CENP-C
> 7oot_B:X-RAY STRUCTURE OF INTERFERON REGULATORY FACTOR 4 DNA BINDING DOMAIN BOUND TO AN INTERFERON-STIMULATED RESPONSE ELEMENT
HT----ATNTRGCT----SC L +--------8hcm_A +------------1 --DCKTRG----RGYA---- L +-------2 +--------3zp5_A ! ! ------------RG--NG-- +-3 +---------------------7dci_A ! ! --DCKTRGST--RGYC---- L --4 +-----------------------------4uno_A ! ------NASTRTHTNTSTLT L +-----------------------------3co6_C |
> 7otq_E:CRYO-EM STRUCTURE OF ALC1/CHD1L BOUND TO A PARYLATED NUCLEOSOME
> 7pbl_C:RUVAB BRANCH MIGRATION MOTOR COMPLEXED TO THE HOLLIDAY JUNCTION - RUVB AAA+ STATE S1 [T2 DATASET]
----------------------------------------RC +-------------8efv_A +---2 TANAFGRGKAQGEG---------------------------- L +---------4 +-------------8btg_B ! ! --------------RT-------------------------- ! +-----------------7z6h_K ! --------------------------------YGRG------ --6 +4wcg_A ! +---------------1 ------------------------------RCYG--KT---- ! +---3 +2acj_B ! ! ! --------------------STQASGATSTQT--------QA L +------5 +----------------4on0_B ! ----------------ETNTSCRGHC--RT--------QA-- L +--------------------4h0e_A |
> 7pet_H:THE 4X177 NUCLEOSOME ARRAY CONTAINING H1
> 7psx_B:STRUCTURE OF HOXB13 BOUND TO HYDROXYMETHYLATED DNA
RT----VTKGNA------KA-- L +-------------------2lkx_A ! RT--QTVAQTNA---------- L ! +8osb_E +-----6 +--3 RT----IAQCNA----MG---- L ! ! +-----4 +1b72_A ! ! ! ! RC----IAQCNA----YC---- L ! ! ! +---3rkq_B ! +---------5 ------NCICNARGRG------ L +-7 ! +4xrm_B ! ! ! +-1 ------NCITNA----RGRG-- L ! ! +---------2 +6fqq_E ! ! ! --RT--NT--NA----IARG-- L --8 ! +4cyc_B ! ! ------VTCCNA----QA--RT L ! +-------------------------8g87_X ! ----------------YCFAKC L +--------------------------6pe2_B |
> 7q2y_A:CRYO-EM STRUCTURE OF CLAMPED S.CEREVISIAE CONDENSIN-DNA COMPLEX (FORM II)
--ET-------------------------------------------------------------- +-----------------------------8a8j_B +-2 ------RA--NT----ATVT--STRG---------------------------------------- L ! +-----------------------------6mg1_B +-3 AT---------------------------------------------------------------- ! ! +------------------6yuf_A +-4 +----------1 ----------------------NCTTATRG------------------------------------ L ! ! +------------------2dgc_A +-5 ! ------------------------------STICICRCKCIC--EC----RC----------YTST L ! ! +-----------------------------1zzi_A --6 ! ------------------------------SCICVCRC----IC--ECNCRCPANAFAKCKCDC-- L ! +-----------------------------3vke_A ! ----RG--NT--ATAT----RG-------------------------------------------- L +-----------------------------5vpe_C |
> 7q3o_C:STRUCTURE OF CDX1 BOUND TO HYDROXYMETHYLATED DNA
RT--QTVAQTNA------ L +8osb_E +------1 RT----VTKGNA--KA-- L ! +2lkx_A +----5 ------NCICRG------ L ! ! +4xrm_B ! ! +-2 ------NCITNARGRG-- L ! +------3 +6fqq_E +-------------6 ! --RT--NT--NAIARG-- L ! ! +4cyc_B ! ! RT----IAQCNAMG---- L +-7 ! +----1b72_A ! ! +------4 RC----IAQCNAYC---- L ! ! +----3rkq_B --8 ! ------VTCCNAQA--RT L ! +-------------------------8g87_X ! ------------YCFAKC L +--------------------------6pe2_B |
> 7r5s_T:STRUCTURE OF THE HUMAN CCAN BOUND TO ALPHA SATELLITE DNA
> 7r5s_W:STRUCTURE OF THE HUMAN CCAN BOUND TO ALPHA SATELLITE DNA
> 7rcf_A:FOURTH STAGE REENGINEERED VARIANT OF I-ONUI WITH STABILITY ENHANCING SUBSTITUTIONS
ST----RG--RC--ATVC----DC--YARTRGTAWGSAFC----------RGQG--EASCYTRTWCQGRTEC L +----------------------7rcc_D +------2 SGSTLG--RGKGVT------HCHG----QTRTDC--SANA--KGSCSTTARGQGRG----------RTEAVG L ! ! +--------------4yis_A --3 +-------1 SGIG----RGQG--DGTAYCAT--SCVCKGRG---------------------------------------- L ! +--------------6fb0_A ! ------------------------------EC--------DT--------------------KG-------- L +-----------------------------1r7m_B |
> 7scy_H:NUC147 BOUND TO SINGLE BRCT
> 7t8k_B:BRXR FROM ACINETOBACTER BREX TYPE I PHAGE RESTRICTION SYSTEM BOUND TO DNA
--TTKATTQTTGLTRT----KA-- L +-----------------2p7c_B +-----------3 ------------YG---------- ! ! +---3eyi_B ! +-------------2 ----------RCYG--------KT +-4 +---2acj_B ! ! ----------NT--NAIARG---- L ! ! +4cyc_B --5 +-----------------------------1 ----------NCITNARGRG---- L ! +6fqq_E ! RC--------IAQCNAYC------ L +-----------------------------3rkq_B |
> 7tdx_A:STRUCTURE OF FOXP3-DNA COMPLEX
----------NAST--RGHT--STLT-------- L +7cby_C +-----------2 ----------NAST--RGHT--STFT-------- L ! +1vtn_C +------4 --ST------NAST--RTHT--ST---------- L ! ! +3l2c_A +---7 +------------1 ----------NAST--RTHT--STLT-------- L ! ! +4lg0_A ! ! ----RGSTRTSTHG-------------------- L ! +-------------------3zpl_B +---8 TT----KATTQTTG----LTRT----KA--FTYT L ! ! +-----2p7c_B ! ! +------------3 ----------RC------YG--------KT---- ! +----6 +-----2acj_B +-9 ! --------KT--RG----RGYA----KA------ L ! ! +------------------5jvt_A ! ! --------KT--RGST--RGYA------------ L +-10 ! +-------------4bnc_A ! ! +-------------5 ----------RGNT--RGSTAT--RA-------- L ! ! +-------------2o6g_G -11 ! --------KT--RGAT--RGNT------------ L ! +---------------------------8smh_F ! ------------------YG-------------- +-----------------------------3eyi_B |
> 7tfl_C:ATOMIC MODEL OF S. CEREVISIAE CLAMP LOADER RFC BOUND TO DNA
----------------RC +-------------8efv_A +---1 ------KAQG--EG---- L +-----------2 +-------------8btg_B ! ! ------RC------RT-- --3 +-----------------7z6h_K ! ETNGRG--FARA------ L +-----------------------------7aud_E |
> 7tfl_E:ATOMIC MODEL OF S. CEREVISIAE CLAMP LOADER RFC BOUND TO DNA
NTRT------------------ +----------------7tfl_E +-1 ----TANAFGRGKA----EG-- L +---------2 +----------------8btg_B ! ! --------------------RT --3 +-----------------7z6h_K ! --------------FARA---- L +---------------------------7aud_E |
> 7ufm_A:VCHTNSC AAA+ WITH DNA (DOUBLE HEPTAMER)
TG------------ L +-----------------------------2v1u_A +-2 ----NTAGRG--EG L ! +-----------------------------8btg_B --3 --RC---------- ! +------7mcs_F +----------------------1 ----------MG-- L +------8trg_A |
> 7unc_a:POL II-DSIF-SPT6-PAF1C-TFIIS COMPLEX WITH REWRAPPED NUCLEOSOME
> 7und_e:POL II-DSIF-SPT6-PAF1C-TFIIS-NUCLEOSOME COMPLEX (STALLED AT +38)
> 7ux9_A:ARABIDOPSIS DDM1 BOUND TO NUCLEOSOME (H2A.W, H2B, H3.3, H4, WITH 147 BP DNA)
> 7ux9_C:ARABIDOPSIS DDM1 BOUND TO NUCLEOSOME (H2A.W, H2B, H3.3, H4, WITH 147 BP DNA)
> 7ux9_E:ARABIDOPSIS DDM1 BOUND TO NUCLEOSOME (H2A.W, H2B, H3.3, H4, WITH 147 BP DNA)
> 7v90_H:TELOMERIC MONONUCLEOSOME
RGRG---------- +7v90_H +-----------3 --RG---------- ! +7k63_H +----5 --RG---------- ! ! +3x1t_H +---6 +-----------2 ------------RT ! ! +5gt0_C ! ! --RG---------- +--7 +-----------------7k5x_H ! ! --RT---------- ! ! +--7wlr_D ! +------------------4 ------------RA +--8 ! +7xsx_a ! ! +--1 ----LC-------- ! ! +8bvw_e +-9 ! ------RAAANA-- ! ! +------------------------1jfi_B -10 ! ------------RA ! +---------------------------7ea8_A ! --RC---------- +----------------------------6buz_H |
> 7v94_A:CRYO-EM STRUCTURE OF THE CAS12C2-SGRNA-TARGET DNA TERNARY COMPLEX
----NGLGQGQTQA--ECNC-- L +-----------------------------7way_A +-1 --------------------AT L +-2 +-----------------------------6ny2_Y ! ! --------------SC------ --3 +-----------------------------7c7l_A ! LTRT------------------ L +-----------------------------7pla_A |
> 7vdt_B:THE MOTOR-NUCLEOSOME MODULE OF HUMAN CHROMATIN REMODELING PBAF- NUCLEOSOME COMPLEX
> 7vo0_N:STREPTOMYCES COELICOLOR ZINC UPTAKE REGULATOR COMPLEXED WITH ZINC AND DNA (TRIMER OF DIMERS)
TT------KATTQTTG----LTRT----KA--FTYT L +--------2p7c_B +--------------5 ------------NAST--RTHT--STLT-------- L ! +--------4lg0_A +-----6 --------------RC----YG--------KT---- ! ! +2acj_B +-7 +----------------------3 --VTSARGTA--RT---------------------- L ! ! +6za3_B ! ! --------------------YG-------------- +-8 +-----------------------------3eyi_B ! ! ------------NAST--RTHT--ST---------- L ! ! +---3l2c_A +-9 +-------------------------4 --------------NAST--HT--STLT-------- L ! ! +---7cby_C ! ! --------------NC----ITNA--RGRG------ L ! ! +6fqq_E -10 +-----------------------------1 --------------NT------NA--IARG------ L ! +4cyc_B ! ------------QTVA----QTNA------------ L ! +8osb_E +-----------------------------2 --------------VT----KGNA----KA------ L +2lkx_A |
> 7vou_C:THE CRYSTAL STRUCTURE OF HUMAN FORKHEAD BOX PROTEIN IN COMPLEX WITH DNA 1
----------------NAST--RGHT--STLT------------ L +7cby_C +----1 ----------------NAST--RGHT--STFT------------ L +--------------5 +1vtn_C ! ! ------ST--------NAST--RTHT--STLT------------ L +---8 +-----4lg0_A ! ! ----------RGSTRTSTHG------------------RA---- L ! ! +3zpl_B ! +-------------------2 ----------------RC------YG------------------ +-10 +2acj_B ! ! --TT--------KATTQTTG----LTRT----KA------FTYT L ! ! +----2p7c_B ! ! +-------------4 ----------------------------------KGKG------ L ! +-----7 +----5xfq_A +-11 ! --------------KT--RG----RGYA----KA---------- L ! ! +------------------5jvt_A ! ! ----------------NAST--RTHT--ST-------------- L ! ! +---------3l2c_A +-12 ! +----------6 ----------------RGNT--RGSTAT--RA------------ L ! ! +----9 +---------2o6g_G ! ! ! RT--LA--NTHGTTETYTRG------------------------ L ! ! +--------------------1f4k_B -13 ! --------------KT--RGAT--RGNT---------------- L ! +----------------------------8smh_F ! --------------KT--RGST--RGYA---------------- L ! +--4bnc_A +--------------------------3 --------------KT--RGAT--RGNT---------------- L +--1pue_E |
> 7vpz_N:CRYO-EM STRUCTURE OF STREPTOMYCES COELICOLOR TRANSCRIPTION INITIAL COMPLEX WITH ONE ZUR DIMER
RT------TCTGYTRT-------------- L +--------------7vpz_N +-------3 ------------NASTRTHT--STLT---- L ! +--------------4lg0_A +---4 --------------RC--YG--------KT ! ! +2acj_B ! +---------------------2 --VTSARGTA--RT---------------- L --5 +6za3_B ! --------------NC--ITNA--RGRG-- L ! +6fqq_E +--------------------------1 --------------NT----NA--IARG-- L +4cyc_B |
> 7waz_A:PLMCASX-SGRNAV1-DSDNA TERNARY COMPLEX AT TS LOADING STATE
> 7wlr_D:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING KOMAGATAELLA PASTORIS HISTONES
> 7wlr_E:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING KOMAGATAELLA PASTORIS HISTONES
> 7wlr_G:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING KOMAGATAELLA PASTORIS HISTONES
> 7wnh_D:CRYSTAL STRUCTURE OF NURR1 BINDING TO NBRE
CAECKG--KGRG----RTRT L +----1cit_A +----------5 --ECKGAG--RG-------- L ! +----4ond_A +-7 --EAKG--RTRT--RT---- ! ! +4umm_E ! +--------------3 ----KGVT--RG-------- L ! +2c7a_B --8 --ECKG----RA-------- L ! +--5krb_G ! +-------4 --EAKG--KTRG-------- L ! ! ! +4umm_A ! ! +--1 ----KGVG--RG-------- L +------6 +4tnt_B ! ----KGVT--RG-------- L ! +5emc_A +----------2 --ECKGAG--KTRG------ L +4aa6_B |
> 7x74_H:CRYO-EM STRUCTURE OF STREPTOMYCES COELICOLOR TRANSCRIPTION INITIAL COMPLEX WITH TWO ZUR DIMERS
--------------RC----YG--------KT------ +2acj_B +----------------------------2 --VTSARGTA--RT------------------------ L ! +6za3_B ! TT------KATTQTTG----LTRT----KA----FTYT L ! +--------2p7c_B +-9 +-------------5 --------------NAST--HT--STFT---------- L ! ! ! +--------1vtn_C ! ! +--7 --------------NAST--HT--STLT---------- L ! ! ! ! +-----7cby_C ! ! ! ! +------------4 ------------NAST--RTHT--STLT---------- L +-10 +---8 +---6 +-----4lg0_A ! ! ! ! ------------NAST--RTHT--ST------------ L ! ! ! +------------------3l2c_A ! ! ! ------RGSTRTSTHG----------------RA---- L +-11 ! +-------------------------3zpl_B ! ! ! --------------------YG---------------- ! ! +-----------------------------3eyi_B ! ! --------------NC----ITNA--RGRG-------- L +-12 ! +6fqq_E ! ! +-----------------------------1 --------------NT------NA--IARG-------- L ! ! +4cyc_B +-13 ! --------------NC----ICNA--RGRG-------- L ! ! +-----------------------------4xrm_B ! ! --------------VT----KGNA----KA-------- L -14 +-----------------------------2lkx_A ! ------------QTVA----QTNA-------------- L ! +---8osb_E +-------------------------3 --------------IA----QCNA--YC---------- L +---3rkq_B |
> 7x7p_M:CRYOEM STRUCTURE OF DSDNA-RUVB-RUVA DOMAIN3 COMPLEX
------------------------------------------RC +-------------8efv_A +---2 TANAFGRGFAKAQG--EG-------------------------- L +---------4 +-------------8btg_B ! ! ------------------RT------------------------ ! +-----------------7z6h_K +-5 ----------------------------------YGRG------ ! ! +4wcg_A ! ! +---------------1 --------------------------------RCYG--KT---- --6 +----------3 +2acj_B ! ! --------------------ETNTSCRGHCRT--------QA-- L ! +----------------4h0e_A ! --------------RT---------------------------- L +-----------------------------8trg_A |
> 7xjg_C:CRYO-EM STRUCTURE OF E.COLI RETRON-EC86 IN COMPLEX WITH ITS EFFECTOR AT 2.5 ANGSTROM
--TT------KATTQTTG--LTRT----KA--FTYT L +-------2p7c_B +--2 ----------DCKT--RG--RGYA----KA------ L +-----------3 +-------5jvt_A ! ! --------------NASTRGHT--STFT-------- L +------4 +----------1vtn_C ! ! --------------------YG-------------- ! ! +---3eyi_B +-5 +------------------1 ----------------RC--YG--------KT---- ! ! +---2acj_B --6 ! RT--LANTHGTTETYTRG------------------ L ! +-----------------------------1f4k_B ! ------DCLT--AGTTRG----RG------------ L +-----------------------------5h3r_A |
> 7xsx_a:RNA POLYMERASE II ELONGATION COMPLEX TRANSCRIBING A NUCLEOSOME (EC49)
> 7xv6_B:CRYSTAL STRUCTURE OF THE HUMAN TR4 DNA-BINDING DOMAIN WITH C-TERMINAL EXTENSION (DBD-CTE) HOMODIMER BOUND TO DR1 RESPONSE ELEMENT
--EAKG--RTRT--RT +4umm_E +---1 CAECKG--KGRG---- L +----------4 +1cit_A ! ! --ECKGAG--RG---- L ! +---4ond_A +-6 --ECKG----RA---- L ! ! +---5krb_G ! +----------5 ----KGVT--RG---- L ! ! +5emc_A +---------7 +---3 --ECKGAG--KTRG-- L ! ! +4aa6_B ! ! --EAKG--KTRG---- L --8 ! +4umm_A ! +---------------2 ----KGVG--RG---- L ! +4tnt_B ! ----KGVT--RG---- L +-------------------------2c7a_B |
> 7xvn_C:STRUCTURAL BASIS FOR DNA RECOGNITION FEATURE OF RETINOID-RELATED ORPHAN RECEPTORS
CAECKG--KGRG----RTRT L +----1cit_A +--------------5 ----KGVT--RG--RC---- L ! +----2c7a_B ! --EAKG--RTRTRT------ +--7 +-4umm_E ! ! +---------3 --EAKG--KTRG-------- L ! ! ! ! +4umm_A ! ! ! +-1 ----KGVG--RG-------- L ! +-------6 +4tnt_B --8 ! --ECKGAGKT---------- L ! ! +4aa6_B ! +----------2 ----KGVT--RG-------- L ! +5emc_A ! --ECKG----RA-------- L ! +----5krb_G +-----------------4 --ECKGAG--RG-------- L +----4ond_A |
> 7y7i_E:CHICKEN KNL2 IN COMPLEX WITH THE CENP-A NUCLEOSOME
> 7yqk_C:CRYO-EM STRUCTURE OF GAMMAH2AXK15UB-H4K20ME2 NUCLEOSOME BOUND TO 53BP1
----------RT-- +----------------5gt0_C ! ----------RA-- +---4 +7xsx_a ! ! +-1 ----LC-------- ! +----------------3 +8bvw_e +-----6 ! ----------RC-- ! ! +7ux9_E ! ! --------RA---- +--7 +--------------------5o9g_G ! ! ----------RA-- ! ! +7ea8_A ! ! +-------------------2 ----------RT-- +-8 +------5 +7zs9_e ! ! ! RAAA--NA------ ! ! +-------------------1jfi_B --9 ! ----LC----RT-- L ! +-----------------------------7egp_S ! ------------KC +-----------------------------7cvo_B |
> 7ywx_E:STRUCTURE OF THE HUMAN CCAN CENP-A ALPHA-SATELLITE COMPLEX
> 7yz7_A:CRYSTAL STRUCTURE OF THE ZEBRAFISH FOXH1 BOUND TO THE TGTGGATT SITE
------------NAST--RGHT--STLT------------ L +---7cby_C +----------------3 ------------NAST--RTHT--STLT------------ L ! ! +4lg0_A ! +---1 ------------NAST--RGHT--STFT------------ L +--7 +1vtn_C ! ! ----------RTSTHG------------------RA---- L ! ! +-3zpl_B ! +------------------2 --------------RC----YG------------------ +--8 +-2acj_B ! ! --TT----KATTQTTG----LTRT----KA------FTYT L ! ! +-----2p7c_B ! ! +-------------4 ------------------------------KGKG------ L +-9 +---6 +-----5xfq_A ! ! ! ----------KT--RG----RGYA----KA---------- L ! ! +-------------------5jvt_A ! ! ------------NAST--RTHT--ST-------------- L -10 ! +------------3l2c_A ! +-------------5 RT--LAHGTTETYTRG------------------------ L ! +------------1f4k_B ! ----------KT--RGAT--RGNT---------------- L +----------------------------8smh_F |
> 7yzb_A:CRYSTAL STRUCTURE OF THE HUMAN FOXH1 BOUND TO THE TGTGGATT SITE
----------NAST--RGHT--STFT---- L +------------1vtn_C +--------------3 ------------RG----RGYA----KA-- L ! +------------5jvt_A ! ----------NAST--RGHT--STLT---- L ! +-----7cby_C ! +-------------1 ----------NAST--RTHT--STLT---- L +-7 +-4 +-----4lg0_A ! ! ! ! TT----KATTQTTG----LTRT----KAFT L ! ! +-----5 +-------------------2p7c_B ! ! ! ! ----------NAST--RTHT--ST------ L ! ! ! ! +---------3l2c_A +-8 +-6 +----------2 ------------RGNTRGSTAT--RA---- L ! ! ! +---------2o6g_G ! ! ! --------KT--RGAT--RGNT-------- L --9 ! +--------------------------8smh_F ! ! ----------NC----ICNA--RGRG---- L ! +-----------------------------4xrm_B ! --KTHG------------------------ +-----------------------------5hdn_C |
> 7yze_A:CRYSTAL STRUCTURE OF THE HUMAN FOXA2 BOUND TO THE TGTTTACT SITE (FORKHEAD MOTIF GTAAACA)
----------------NASTRGHT--STLT-------- L +7cby_C +----1 ----------------NASTRGHT--STFT-------- L +-----------2 +1vtn_C ! ! ----------------NASTRTHT--STLT-------- L +------4 +-----4lg0_A ! ! ----------------RC----YG-------------- +-7 +-----------------2acj_B ! ! RT--LA--NTHGTTETYTRG------------------ L ! +------------------------1f4k_B ! ------ST--------NASTRTHT--ST---------- L +--8 +---------3l2c_A ! ! +----------3 ----------------RGNTRGSTAT--RA-------- L ! ! +--5 +---------2o6g_G ! ! ! ! ----------RGSTRTSTHG----------------RA L --9 +-6 +--------------------3zpl_B ! ! --TT--------KATTQTTG--LTRT----KA------ L ! +-----------------------2p7c_B ! --------------------------------KGKG-- L +---------------------------5xfq_A |
> 7yzg_A:CRYSTAL STRUCTURE OF THE XENOPUS FOXH1 BOUND TO THE TGTGGATT SITE
----------NASTRGHT--STLT---------- L +---7cby_C +-----------------2 ----------NASTRTHT--STLT---------- L ! ! +4lg0_A ! +---1 ----------NASTRGHT--STFT---------- L ! +1vtn_C +-7 --TT--KATTQTTG--LTRT----KA----FTYT L ! ! +----2p7c_B ! ! +------------3 --------------------------KGKG---- L +--8 +---5 +----5xfq_A ! ! ! ------------RC--YG---------------- ! ! +-----------------2acj_B ! ! --------KT--RG--RGYA----KA-------- L --9 +-----------------------5jvt_A ! ----------NASTRTHT--ST------------ L ! +-----------3l2c_A ! +--------4 ------STRTSTHG--------------RA---- L +-----6 +-----------3zpl_B ! RT--LATTETYTRG-------------------- L +--------------------1f4k_B |
> 7z9c_C:E.COLI GYRASE HOLOCOMPLEX WITH 217 BP DNA AND ALBICIDIN
> 7zs9_e:YEAST RNA POLYMERASE II TRANSCRIPTION PRE-INITIATION COMPLEX WITH THE +1 NUCLEOSOME (COMPLEX A)
> 8aag_A:H1-BOUND PALINDROMIC NUCLEOSOME, STATE 1
> 8atf_Q:NUCLEOSOME-BOUND INO80 ATPASE
> 8b4h_A:ISTA TRANSPOSASE CLEAVED DONOR COMPLEX
--QTVAQTNA---- L +-8osb_E +--2 ----IAQCNAMG-- L +--------3 +-1b72_A ! ! ----IAQCNAYC-- L --4 +----3rkq_B ! RT--NT--NAIARG L ! +4cyc_B +-------------1 ----NCITNARGRG L +6fqq_E |
> 8bvw_e:RNA POLYMERASE II PRE-INITIATION COMPLEX WITH THE DISTAL +1 NUCLEOSOME (PIC-NUC18W)
> 8bzm_E:FOXK1-ELF1-HETERODIMER BOUND TO DNA
--------------NAST--RGHT--STFT------RT L +-----------------1vtn_C +--5 --------------NAST--RGHT--STLT-------- L ! ! +-----7cby_C ! +-----------2 ----ST--------NAST--RTHT--STLT-------- L ! +-----4lg0_A +--6 --------RGSTRTSTHG--------------RA---- L ! ! +3zpl_B ! ! +----------------1 ----------------RC----YG-------------- ! +--4 +2acj_B +--7 ! TT--------KATTQTTG----LTRT----KA--FT-- L ! ! +-----------------2p7c_B ! ! ----ST--------NAST--RTHT--ST---------- L +-8 ! +---------3l2c_A ! ! +-------------3 ----------------RGNTRGSTAT--RA-------- L ! ! +---------2o6g_G --9 ! --LA--NTHGTTETYTRG-------------------- L ! +--------------------------1f4k_B ! ------------KT--RGAT--RGNT------------ L +---------------------------8smh_F |
> 8cef_H:ASYMMETRIC DIMERIZATION IN A TRANSCRIPTION FACTOR SUPERFAMILY IS PROMOTED BY ALLOSTERIC INTERACTIONS WITH DNA
--ECKG----RA----PA--RC L +5krb_G +---1 CAECKG--KGRG----RTRT-- L ! +1cit_A +-----5 --EAKG--KTRG---------- L ! ! +4umm_A ! +---2 ----KGVG--RG---------- L +-------6 +4tnt_B ! ! ----KGVT--RG---------- L ! ! +5emc_A ! +---------3 --ECKGAG--KTRG-------- L --8 +4aa6_B ! --EAKG--RTRT--RT------ ! +4umm_E ! +--------------4 ----KGVT--RG---------- L +-7 +2c7a_B ! --ECKGAG--RG---------- L +---------------4ond_A |
> 8ceo_r:YEAST RNA POLYMERASE II TRANSCRIPTION PRE-INITIATION COMPLEX WITH CORE MEDIATOR AND THE +1 NUCLEOSOME
> 8cli_A:TFIIIC TAUB-DNA MONOMER
----------RCYG--KT-- +-2acj_B +-------------1 STQASGATSTQT------QA L +----2 +-4on0_B ! ! ------------YGRG---- --3 +---------------4wcg_A ! ST--PTTCSTQC--RA---- L +--------------------1ddn_B |
> 8com_A:STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
> 8com_B:STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
> 8com_C:STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
> 8com_H:STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
> 8cww_A:STRUCTURE OF S. CEREVISIAE HOP1 CBR BOUND TO A NUCLEOSOME
> 8d0b_A:HUMAN CST-DNA POLYMERASE ALPHA/PRIMASE PREINITIATION COMPLEX BOUND TO 4XTEL-FOLDBACK TEMPLATE
------------------------------------------------YTYGRTLGKGRTMTFTKG L +-----------------------------6d6v_D +-2 ------------------RTKTATTTWTRTRTITYT--NTNTMTQTLT------------------ L ! ! +6irq_A --3 +-----------------------------1 RTQTSTATNTQTTTWTRT------------------------------------------------ L ! +8uzt_A ! ------------------------------------AA---------------------------- L +-----------------------------7ypo_D |
> 8ee9_F:HUMAN PU.1 ETS-DOMAIN (165-270) BOUND TO D(AATAAAAGGAATGGGG)
DCKT--RG----RGYA------ L +-----------------------------3zp5_A +-2 DCKT--RGST--RGYC------ L ! +-----------------------------4uno_A +-3 ------ATNT--CT----SC-- L ! ! +-------------8hcm_A +-4 +---------------1 ------------RG--NG---- ! ! +-------------7dci_A --5 ! --KT--RGAT--RGYA------ L ! +-----------------------------4iri_A ! ----DCST--RGHGNTST--KT L +-----------------------------7yzb_A |
> 8efv_A:STRUCTURE OF SINGLE HOMO-HEXAMERIC HOLLIDAY JUNCTION ATP-DEPENDENT DNA HELICASE RUVB MOTOR
------------------------------------RC +--------------8efv_A +--2 TAFGAGRGQGEG-------------------------- L +---------4 +--------------8btg_B ! ! ------------RT------------------------ ! +-----------------7z6h_K --5 ----------------------------YGRG------ ! +4wcg_A ! +---------------1 --------------------------RCYG--KT---- +----------3 +2acj_B ! --------------ETNTSCRGHCRT--------QA-- L +----------------4h0e_A |
> 8ejp_B:CRYSTAL STRUCTURE OF THE HOMEODOMAIN OF PLATYPUS SDUX IN COMPLEX WITH DNA CONTAINING 5-BROMOURACIL
RART----VTKGNA--KA L +------------------2lkx_A ! --RT----IAQCNAMG-- L +-5 +----1b72_A ! ! ! --RT--QTVAQTNA---- L ! +-------------4 +--8osb_E ! ! ! --------NCICNARGRG L ! +-3 +4xrm_B +--------6 ! +-1 --------NCITNARGRG L ! ! +-2 +6fqq_E ! ! ! ----RT--NT--NAIARG L --7 ! +4cyc_B ! ! --RC----IAQCNAYC-- L ! +--------------------3rkq_B ! --RT--YTNC--NAKG-- L +-----------------------------8pi8_B |
> 8eml_B:CRYSTAL STRUCTURE OF GSX2 HOMEODOMAIN IN COMPLEX WITH DNA
RT--QTVAQTNA------ L +8osb_E +------1 RT----VTKGNA--KA-- L ! +2lkx_A +-------5 ------NCICNARGRG-- L ! ! +4xrm_B ! ! +-2 ------NCITNARGRG-- L ! +------3 +6fqq_E +----------6 ! --RT--NT--NAIARG-- L ! ! +4cyc_B ! ! RT----IAQCNAMG---- L +-7 ! +----1b72_A ! ! +---------4 RC----IAQCNAYC---- L ! ! +----3rkq_B --8 ! ------VTCCNAQA--RT L ! +-------------------------8g87_X ! ------------YCFAKC L +--------------------------6pe2_B |
> 8g57_E:STRUCTURE OF NUCLEOSOME-BOUND SIRTUIN 6 DEACETYLASE
> 8gxq_D:PIC-MEDIATOR IN COMPLEX WITH +1 NUCLEOSOME (T40N) IN MH-BINDING STATE
> 8gxs_D:PIC-MEDIATOR IN COMPLEX WITH +1 NUCLEOSOME (T40N) IN H-BINDING STATE
> 8h0v_h:RNA POLYMERASE II TRANSCRIBING A CHROMATOSOME (TYPE I)
> 8h7a_A:CRYSTAL STRUCTURE OF THE DIMER FORM KAT6A WH DOMAIN WITH ITS BOUND DOUBLE STRANDED DNA
------NASTRTHT--STLT-------- L +4lg0_A +------------------------1 ------NASTRGHT--STFT-------- L ! +1vtn_C +----4 TTKATTQTTG--LTRT----KA--FTYT L ! ! +-----2p7c_B +-5 +------------------2 --------RC--YG--------KT---- ! ! +-----2acj_B ! ! ------------YG-------------- --6 +-----------------------------3eyi_B ! ------NASTRGHT--STLT-------- L ! +------7cby_C +----------------------3 ------NASTRTHT--ST---------- L +------3l2c_A |
> 8hbm_B:STRUCTURAL BASIS OF THE FARNESOID X RECEPTOR/RETINOID X RECEPTOR HETERODIMER ON INVERTED REPEAT DNA
--EAKG--RTRT--RT +4umm_E +----2 CAECKG--KGRG---- L ! +1cit_A +----------4 ----KGVT--RG---- L ! ! +5emc_A ! +---3 --ECKGAG--KTRG-- L +-----5 +4aa6_B ! ! --EAKG--KTRG---- L ! ! +4umm_A +---6 +---------------1 ----KGVG--RG---- L ! ! +4tnt_B +-7 ! --ECKG----RA---- L ! ! +---------------------5krb_G --8 ! ----KGVT--RG---- L ! +-------------------------2c7a_B ! --ECKGAG--RG---- L +--------------------------4ond_A |
> 8hcl_A:ZEBRAFISH IRF-10 DBD COMPLEX WITH DNA
HTLT------RGNT--RGSTAT--RA-- L +-----------------------------2o6g_G +-1 ----QCKT--RGAT----RGNT------ L +-2 +-----------------------------8smh_F ! ! ----DCKT--RG------RGYA----KA L +-3 +-----------------------------5jvt_A ! ! ------ECKT--RGAT--RG-------- L +-4 +-----------------------------1pue_E ! ! ----DCKT--RGST----RGYA------ L +-5 +-----------------------------4bnc_A ! ! ------------ST--RTHT--STLT-- L --6 +-----------------------------4lg0_A ! ------------ST--RTHT--ST---- L +-----------------------------3l2c_A |
> 8he5_a:RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH RAD26 AND ELF1, STALLED AT SHL(-3.5) OF THE NUCLEOSOME
> 8hig_A:CO-CRYSTAL STRUCTURE OF C-TERMINAL DNA BINDING DOMAIN OF SACCHAROPOLYSPORA ERYTHRAEA GLNR IN COMPLEX WITH ITS COGNATE PROMOTER DNA
--RG--DTVT----STRG------WT---- L +------------------------6lxn_A ! ------------------YG---------- --3 +---3eyi_B ! +-------------1 ------------RC--------KT------ +------2 +---2acj_B ! TT--KATT--QTTG----LTRT----FTYT L +-----------------2p7c_B |
> 8iaz_A:CRYO-EM STRUCTURE OF THE ISFBA1 TNPB-RERNA-DSDNA COMPLEX
LGSGKGFASTKCSCSGKTKG----TARTFGFA--FGYCVCNCNALG----------------YA---- L +--------------8iaz_A +-----1 MC------------WT--NTDGKG----RA--PGTA--------TCDGTCRCAG--QGIT----ACLT L +-----2 +--------------8hhl_A ! ! --------------------------------------------NA--------------KG------ L --3 +--------------------8dc2_A ! ------------------------------------------------------QC------------ L +--------------------------6ny3_Y |
> 8ik5_C:TRANSCRIPTION FACTOR LMX1A HOMEOBOX DOMAIN IN COMPLEX WITH WNT1 PROMOTER
RART------------VTKGNA------KA L +-2lkx_A +----------3 ----------------NCITNA----RGRG L ! ! +6fqq_E +------5 +-1 ----RT----------NT--NA----IARG L ! ! +4cyc_B ! ! --RC------------IAQCNA----YC-- L ! +------------3rkq_B +---------6 --RT----------QTVAQTNA-------- L ! ! +8osb_E ! ! +-2 --RT------------IAQCNA----MG-- L --7 +----------------4 +1b72_A ! ! ----------------NCICNARGRG---- L ! +--4xrm_B ! ----AALAITHTKT---------------- +-----------------------------2ofi_A |
> 8ity_O:HUMAN RNA POLYMERASE III PRE-INITIATION COMPLEX CLOSED DNA 1
TTKATTQTTGLTRTKA--FTYT---------------- L +-----------------2p7c_B +-----------2 ----------YG-------------------------- ! ! +---3eyi_B +-3 +-------------1 --------RCYG----KT-------------------- ! ! +---2acj_B --4 ! ------------------------RGSTRTSTHG--RA L ! +-----------------------------3zpl_B ! ----------------------DCLT--AGTTRGRGRA L +-----------------------------5h3r_A |
> 8ity_P:HUMAN RNA POLYMERASE III PRE-INITIATION COMPLEX CLOSED DNA 1
RCYGKT-------------------- +-----------------------------2acj_B +-1 --------NGRGKG--SGSAQAVC-- L +-2 +-----------------------------5no6_N ! ! --YG---------------------- --3 +-----------------------------3eyi_B ! ------TT----KATTQTTGLTRTKA L +-----------------------------2p7c_B |
> 8j91_C:CRYO-EM STRUCTURE OF NUCLEOSOME CONTAINING ARABIDOPSIS THALIANA HISTONES
> 8j9v_A:CRYO-EM STRUCTURE OF THE AFRICAN SWINE FEVER VIRUS TOPOISOMERASE 2 COMPLEXED WITH CUT02ADNA AND ETOPOSIDE (EDI-1)
NAST--RGHT--STFT-------------------------------- L +-----------------------------1vtn_C +-1 ------------------DGICLGWGQGKTLTKGFGFG---------- L +-2 +-----------------------------4y0f_A ! ! --------------------------------------NTATATSTRG L --3 +-----------------------------1dh3_C ! --NAST--RGHT--STLT------------------------------ L +-----------------------------7cby_C |
> 8jcc_D:HUMAN HISTONE H2B VARIANT H2BFWT CRYO-EM STRUCTURE WITH 601 DNA SEQUENCE
> 8jh2_e:RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH ELF1, SPT4/5 AND FOREIGN DNA, STALLED AT SHL(-1) OF THE NUCLEOSOME
> 8jhf_A:NATIVE SUV420H1 BOUND TO 167-BP NUCLEOSOME
> 8kb5_A:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CONTAINING H3.8
> 8kcb_A:COMPLEX OF DDM1-NUCLEOSOME(H2A) COMPLEX WITH DDM1 BOUND TO SHL2
> 8kcb_D:COMPLEX OF DDM1-NUCLEOSOME(H2A) COMPLEX WITH DDM1 BOUND TO SHL2
> 8oja_A:HSV-1 DNA POLYMERASE-PROCESSIVITY FACTOR COMPLEX IN EXONUCLEASE STATE
> 8osb_E:TWIST1-TCF4-ALX4 COMPLEX ON SPECIFIC DNA
RT--QTVAQTNA------ L +8osb_E +-------1 RT----VTKGNA--KA-- L ! +2lkx_A +------5 ------NCICNARGRG-- L ! ! +4xrm_B ! ! +-2 ------NCITNARGRG-- L ! +------3 +6fqq_E +-----------6 ! --RT--NT--NAIARG-- L ! ! +4cyc_B ! ! RT----IAQCNAMG---- L --7 ! +----1b72_A ! +---------4 RC----IAQCNAYC---- L ! +----3rkq_B ! ------VTCCNAQA--RT L +--------------------------8g87_X |
> 8pmf_A:TRANSCRIPTION FACTOR BARHL2 BOUND TO DNA SEQUENCES
--RT----IAQCNA----MG---- L +---1b72_A +-----4 RART----VTKGNA------KA-- L ! +---2lkx_A +--5 --RT--QTVAQTNA---------- L ! ! +--8osb_E ! ! ! --------NCICNARGRG------ L ! +------3 +4xrm_B +------------6 ! +-1 --------NCITNA----RGRG-- L ! ! +--2 +6fqq_E ! ! ! ----RT--NT--NA----IARG-- L +-7 ! +4cyc_B ! ! ! --RC----IAQCNA----YC---- L ! ! +------------3rkq_B --8 ! --------VTCCNA----QA--RT L ! +-------------------------8g87_X ! ------------------YCFAKC L +--------------------------6pe2_B |
> 8po8_A:STRUCTURE OF ESCHERICHIA COLI HRPA IN COMPLEX WITH ADP AND OLIGONUCLEOTIDE POLY(DC)11 FORMING AN I-MOTIF
RTQT--KTTTMT--ETQTPT---------------- L +-----------------------------5vhe_A +-1 ----IC------KC---------------------- L +-2 +-----------------------------7aud_E ! ! --------------------RTQTVAQTNA------ L +-3 +-----------------------------8osb_E ! ! --------------------RTKTIAQCNA----RT L --4 +-----------------------------1ig7_A ! --------------------RT--VTQTNAMTKTRT L +-----------------------------1jgg_B |
> 8pw0_A:MANGANESE-DEPENDENT TRANSCRIPTIONAL REPRESSOR DR2539 COMPLEXED WITH MANGANESE AND BOUND TO DR1709 PROMOTOR
--------RGSTRTSTHG--------RA---- L +---------------3zpl_B +-----2 ------DCLT--AGTTRG--RG----RA---- L ! ! +5h3r_A +-------3 +---------------1 ----------------RCYG----KT------ ! ! +2acj_B +-4 ! --TT------KATTQTTGLTRTKA----FTYT L ! ! +---------------------2p7c_B --5 ! RT--LANTHGTTETYTRG-------------- L ! +-----------------------------1f4k_B ! ------------------YG------------ +-----------------------------3eyi_B |
> 8q72_D:E. COLI PLASMID-BORNE JETABCD(E248A) CORE IN A CLEAVAGE-COMPETENT STATE
TT----KATTQTTG----------LTRT----KAFTYT L +-----------------------------2p7c_B +-2 --KTHG-------------------------------- ! ! +-----------5hdn_C +-3 +-----------------1 ------------DCKT--RGST--RGYA---------- L ! ! +-----------4bnc_A --4 ! ------------------------YG------------ ! +-----------------------------3eyi_B ! ----------------NAST--RGHT--STLT------ L +-----------------------------7cby_C |
> 8r3g_D:CENTRAL GLYCOLYTIC GENES REGULATOR (CGGR) BOUND TO DNA OPERATOR
--DCLT--AGTTRG--RG-------- L +5h3r_A +---------------1 ------------RCYG----KT---- +----2 +2acj_B ! ! ----RGSTRTSTHG------------ L +--3 +---------------3zpl_B ! ! --------------YG---------- --4 +--------------------3eyi_B ! TT----KATTQTTGLTRTKA--FTYT L +-----------------------2p7c_B |
> 8rbx_M:STRUCTURE OF INTEGRATOR-PP2A BOUND TO A PAUSED RNA POLYMERASE II-DSIF- NELF-NUCLEOSOME COMPLEX
> 8rbx_V:STRUCTURE OF INTEGRATOR-PP2A BOUND TO A PAUSED RNA POLYMERASE II-DSIF- NELF-NUCLEOSOME COMPLEX
> 8rm6_A:CRYSTAL STRUCTURE OF HUMAN ANDROGEN RECEPTOR DNA BINDING DOMAIN BOUND TO ITS RESPONSE ELEMENT: C3(1)ARE
--EAKG--KTRG-- L +4umm_A +-------------------1 ----KGVG--RG-- L ! +4tnt_B +---------5 CAECKG--KGRG-- L ! ! +-------------1cit_A ! +-----4 --ECKGAGKGRG-- L ! ! +1hcq_E +-6 +------------3 ----KGVT--RG-- L ! ! ! +5emc_A ! ! +-2 --ECKGAG--KTRG L --7 ! +4aa6_B ! ! ----KGVT--RG-- L ! +-----------------------------2c7a_B ! --ECKGAG--RG-- L +-----------------------------4ond_A |
> 8siy_G:ORIGIN RECOGNITION COMPLEX ASSOCIATED (ORCA) PROTEIN BOUND TO H4K20ME3-NUCLEOSOME
> 8smh_F:CHIMERIC ETS-DOMAIN OF MURINE PU.1 HARBORING THE CORRESPONDING BETA- STRAND 3 (S3) RESIDUES FROM MURINE ETS-1 IN COMPLEX WITH D(AATAAGCGGAAGTGGG)
--DCKT--RGST--RGYC-------- L +-----------------------------4uno_A +-2 --DCKT--RG----RGYA-------- L ! +-----------------------------3zp5_A +-3 --------ATNT--CT----SC---- L ! ! +-------------8hcm_A +-4 +---------------1 --------------RG------NG-- ! ! +-------------7dci_A +-5 ! ----KT--RGAT--RGYA-------- L ! ! +-----------------------------4iri_A +-6 ! RT----------------------YG L ! ! +-----------------------------5vfx_A --7 ! ------DCST--RGHGNTST------ L ! +-----------------------------7yzb_A ! ------NAST--RTHTNTSTLT---- L +-----------------------------3co6_C |
> 8sro_B:FOXP3 TETRAMER ON TTTG REPEATS
--------NAST--RGHT--STFT------------ L +------------1vtn_C +-------------5 ----------------------------KGKG---- L ! +------------5xfq_A ! --------NAST--RGHT--STLT------------ L ! +------7cby_C +-9 +---------4 --ST----NAST--RTHT--ST-------------- L ! ! ! ! +3l2c_A ! ! +-----7 +------1 --ST----NAST--RTHT--STLT------------ L ! ! ! ! +4lg0_A ! ! ! ! ------RTSTHG--------------------RA-- L +-10 +---8 +----------------3zpl_B ! ! ! TT--KATTQTTG----LTRT----KA------FTYT L ! ! ! +-----2p7c_B ! ! +----------------3 ----------RC----YG--------KT-------- ! ! +-----2acj_B +-11 ! ------KT--RGAT--RGNT---------------- L ! ! +---------------------------8smh_F ! ! ------KT--RGST--RGYA---------------- L ! ! +4bnc_A -12 ! +---------------2 ------KT--RG----RGYA----KA---------- L ! +-----------6 +5jvt_A ! ! ------------AT--RGNT---------------- L ! +----------------1pue_E ! ----TG--RGRG--YC-------------------- L +-----------------------------4yo2_A |
> 8svd_T:STRUCTURE OF M. BAIXIANGNINGIAE DARR-DNA COMPLEX REVEALS NOVEL DIMER- OF-DIMERS DNA BINDING
----TTKA--YGYA L +8svd_T +--1 ----TTKA--YGYG L +---------------------2 +8sva_T ! ! VT--AGDTTTYTLA L --3 +--5gpc_B ! VTRG----QTHTHT L +------------------------5vl9_A |
> 8sxt_A:STRUCTURE OF LINE-1 ORF2P WITH TEMPLATE:PRIMER HYBRID
FGFG------ +------------------8sxt_A ! ------RTPT L --3 +8gh6_A ! +--------------1 --YANA---- L +---2 +8oz7_A ! FCYA------ +--------------6ar1_A |
> 8tvy_M:CRYO-EM STRUCTURE OF CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX WITH RAD26 AND ELF1 (CLOSED STATE)
--------------RC +-----------------------------6ryu_V --3 --EG--------SCRG L ! +---------------------------6kw4_Y +-2 --ETNG--WGRA---- L ! +7aud_E +---------------------------1 RT----QT-------- L +5vhe_A |
> 8txv_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE UBIQUITYLATED AT HISTONE H2A K15 IN COMPLEX WITH RNF168 (CLASS 1)
> 8u14_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE UBIQUITYLATED AT HISTONE H2A LYSINE 15 IN COMPLEX WITH RNF168-UBCH5C (CLASS 2)
> 8upf_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE IN COMPLEX WITH RNF168-UBCH5C
> 8uvk_B:COSR DNA BOUND FORM II
--RG--DTVTSTRG--------WT---- L +------------------------6lxn_A ! ----------YG---------------- +----3 +---3eyi_B ! ! +-------------1 --------RCYG--------KT------ ! +------2 +---2acj_B +-4 ! TTKATTQTTG----LTRTKA----FTYT L ! ! +-----------------2p7c_B --5 ! --RG--DTVTST--RG------RC---- L ! +-----------------------------4nhj_A ! --------VTKGNAKA------------ L +-----------------------------2lkx_A |
> 8v6v_X:CRYO-EM STRUCTURE OF DOUBLY-BOUND SNF2H-NUCLEOSOME COMPLEX
----------RC-- +-----------------------------6ryu_V ! ------NG--RC-- --3 +--8wha_K ! +---------------------1 EG------SCRG-- L +----2 +--6kw4_Y ! ETNGRG----ICKC L +------------------------7aud_E |
> 8vfz_O:CRYO-EM STRUCTURE OF FOXA1 IN COMPLEX WITH ALBN1 NUCLEOSOME (CLASS 2)
----------------NAST--RGHT--STFT----------RTRA L +-----------1vtn_C +--------5 ------------------------------------KGKG------ L +------7 +-----------5xfq_A ! ! --------------KT--RG----RGYA----KA------------ L ! +--------------------5jvt_A ! ----------------NAST--RGHT--STLT-------------- L ! +-----7cby_C ! +-2 ------ST--------NAST--RTHT--STLT-------------- L ! +--------------3 +-----4lg0_A ! ! ! RT--LA--NTHGTTETYTRG-------------------------- L -11 +-8 +-------1f4k_B ! ! ! ----------RGSTRTSTHG--------------------RA---- L ! ! ! +3zpl_B ! ! +---------------------1 ------------------RC----YG--------KT---------- ! +--9 +2acj_B ! ! ! ------ST--------NAST--RTHT--ST---------------- L ! ! ! +---------3l2c_A ! ! ! +----------4 ----------------RGNT--RGSTAT--RA-------------- L +-10 +---6 +---------2o6g_G ! ! --TT--------KATTQTTG----LTRT----KA------------ L ! +--------------------2p7c_B ! --------------KT--RGAT--RGNT------------------ L +---------------------------8smh_F |
> 8vxy_B:STRUCTURE OF HAMA(E138A,K140A)B-PLASMID DNA COMPLEX FROM THE ESCHERICHIA COLI HACHIMAN DEFENSE SYSTEM
------SGWG--FARA--------IC------KC------ L +-7aud_E +---------------------------1 --------------TAHA----------TATA-------- L +-2 +-3kqh_B ! ! STSTRT--------RT--------ST--------STVTMT L +-3 +-----------------------------8w0a_C ! ! --------------------TTIA--RG------------ L +-4 +-----------------------------7oo3_b ! ! ------------------SG-------------------- --5 +-----------------------------7amv_W ! ----------DT---------------------------- L +-----------------------------3upu_A |
> 8wg5_E:CRYO-EM STRUCTURE OF USP16 BOUND TO H2AK119UB NUCLEOSOME
> 8wha_K:STRUCTURE OF DDM1-NUCLEOSOME COMPLEX IN THE ADP-BEFX STATE WITH DDM1 BOUND TO SHL2 AND SHL-2
--NG----RC-- +-8wha_K +-------------2 --------RC-- +----------3 +-6ryu_V ! ! EG----SCRG-- L --4 +---------------6kw4_Y ! --------ICKC L ! +7aud_E +--------------------------1 ----WTLT---- L +5vhe_A |
> 8xas_E:CRYSTAL STRUCTURE OF ATARR1-DBD IN COMPLEX WITH A DNA FRAGMENT
RT--------QTVAQTNA------ L +8osb_E +--2 ------------VTKGNA--KA-- L +--------3 +2lkx_A ! ! RT----------IAQCNAMG---- L +----4 +--1b72_A ! ! ------------NCRG-------- L +----5 +-----------4xrm_B ! ! RC----------IAQCNAYC---- L +----6 +----------------3rkq_B ! ! ------------NCITNARGRG-- L ! ! +6fqq_E +--7 +---------------------1 --RT--------NT--NAIARG-- L ! ! +4cyc_B +-8 ! ------------VTCCNAQA--RT L ! ! +--------------------------8g87_X +-9 ! --------NG--NA---------- L ! ! +-----------------------------2kdz_A -10 ! ----NGRGKGSGSAQAVC------ L ! +-----------------------------5no6_N ! --------RGDTVTSTRG------ L +-----------------------------6lxn_A |
> 8xgc_4:STRUCTURE OF YEAST REPLISOME ASSOCIATED WITH FACT AND HISTONE HEXAMER, COMPOSITE MAP
RG---------------------- +-----------------------------5bk4_C +-1 ----------RCYG----KT---- +-2 +-----------------------------2acj_B ! ! ------------YG---------- --3 +-----------------------------3eyi_B ! --TTKATTQTTGLTRTKA--FTYT L +-----------------------------2p7c_B |
> 9b8u_A:CRYSTAL STRUCTURE OF CRX-RET4 OLIGONUCLEOTIDE COMPLEX
RT--QTVAQTNA-------- L +8osb_E +------1 RT----VTKGNA----KA-- L ! +2lkx_A +---------5 ------NCICRGRG------ L ! ! +4xrm_B ! ! +-2 ------NCITNA--RGRG-- L ! +-----3 +6fqq_E +---------6 ! --RT--NT--NA--IARG-- L ! ! +4cyc_B ! ! RT----IAQCNA--MG---- L +-7 ! +----1b72_A ! ! +-----------4 RC----IAQCNA--YC---- L ! ! +----3rkq_B +--8 ! ------VTCCNA--QA--RT L ! ! +--------------------------8g87_X --9 ! --------------YCFAKC L ! +--------------------------6pe2_B ! RT------YTNC----NAKG L +-----------------------------8pi8_B |
> 9c4c_G:THE STRUCTURE OF TWO MNTR DIMERS BOUND TO THE NATIVE MNEP PROMOTER SEQUENCE
--TT------KATTQTTGLTRTKA--FTYT L +-----2p7c_B +-----------------------1 ----------------RCYG----KT---- +-2 +-----2acj_B ! ! ------------------YG---------- --3 +-----------------------------3eyi_B ! RT--LANTHGTTETYTRG------------ L +-----------------------------1f4k_B |
> 9ezz_A:BACTERIAL HISTONE PROTEIN HBB FROM BDELLOVIBRIO BACTERIOVORUS BOUND TO DNA