(updated: Wed Dec 18 20:42:28 2024)
In these diagrams sets of entries from the database are clustered to show their interface (left) and overall structural (right) similarity. Mouse over complex names to check their SCOP superfamilies and click on the L links to see their structure-based sequence logos. Please check the help page for more details.
> 1sax_A:THREE-DIMENSIONAL STRUCTURE OF S.AUREUS METHICILLIN-RESISTANCE REGULATING TRANSCRIPTIONAL REPRESSOR MECI IN COMPLEX WITH 25-BP DS- DNA
TT------KATT--QTTG--LTRT----KA----FTYT L +-----------------------------2p7c_B +-2 ----DCLT--AG--TTRG----RG--------RA---- L +-3 +-----------------------------5h3r_A ! ! --------------------YG---------------- +-4 +-----------------------------3eyi_B ! ! --------------NASTRTHT--ST------------ L +-5 +-----------------------------3l2c_A ! ! --------------NASTRGHT--STLT---------- L ! ! +-------7cby_C --6 +---------------------1 --LANTHGTTET--YTRG-------------------- L ! +-------1f4k_B ! ------PTPG--TT----------------HG------ L +-----------------------------7d98_Q |
> 1sfu_A:CRYSTAL STRUCTURE OF THE VIRAL ZALPHA DOMAIN BOUND TO LEFT-HANDED Z- DNA
----ITRGECSC--SGKG-------- L +-----------------------------5i2d_R +-1 ------RGTC--DCVA--RGRCRC-- L +-2 +-----------------------------8hih_Q ! ! --QTSTRTETTA----RA-------- L --3 +-----------------------------3iyd_H ! VT--HTPTSA----TTKG------YT L +-----------------------------9c4c_G |
> 1u35_G:CRYSTAL STRUCTURE OF THE NUCLEOSOME CORE PARTICLE CONTAINING THE HISTONE DOMAIN OF MACROH2A
--RT---- +8smw_G +--------------1 --RG---- ! +8ox0_C ! --RT---- +-12 +8u14_G ! ! +-2 --RA---- ! ! +----------6 +1zla_C ! ! ! ! --RA--RA +-----14 +--11 +6a5l_g ! ! ! --RG---- ! ! +----------8jla_C ! ! --RG---- ! ! +8txv_G ! +----------------3 --RG---- ! +5x0y_G -15 --RG--RG ! +-------8kcb_A ! +-----10 LARG---- ! ! ! +7unc_a ! ! +-------7 LCRT---- ! ! +8hr1_E +-------13 --RC---- ! +---6qld_f ! +--8 ----RA-- ! ! +---6g0l_D +-------9 --RA---- ! +7xsx_a ! +-4 LC------ +------5 +8bvw_e ! --RT---- +8grq_A |
> 1u8r_B:CRYSTAL STRUCTURE OF AN IDER-DNA COMPLEX REVEALS A CONFORMATIONAL CHANGE IN ACTIVATED IDER FOR BASE-SPECIFIC INTERACTIONS
TT----KATTQTTGLTRTKA--FTYT L +-----------------------------2p7c_B +-1 --------------YG---------- +-2 +-----------------------------3eyi_B ! ! --DCLT--AGTTRG--RG-------- L +-3 +-----------------------------5h3r_A ! ! ----RGSTRTSTHG------------ L --4 +-----------------------------3zpl_B ! --SG--PTPGTT--------HG---- L +-----------------------------7d98_Q |
> 1w0t_A:HTRF1 DNA-BINDING DOMAIN IN COMPLEX WITH TELOMERIC DNA.
RT------QTVAQTNA-- L +8osb_E +---------------1 RT--------VTKGNA-- L +----2 +2lkx_A ! ! RT--------IAQCNAMG L +--------3 +---------------1b72_A ! ! RC--------IAQCNAYC L --4 +--------------------3rkq_B ! --NARTQT--EC------ L +-----------------------------2kdz_A |
> 1xsd_A:CRYSTAL STRUCTURE OF THE BLAI REPRESSOR IN COMPLEX WITH DNA
TT----KATTQTTG--LTRT--KAFTYT L +-----------------------------2p7c_B +-1 ----RGSTRTSTHG----------RA-- L +-2 +-----------------------------3zpl_B ! ! --DCLT--AGTTRG----RG----RA-- L +-3 +-----------------------------5h3r_A ! ! ----------------YG---------- --4 +-----------------------------3eyi_B ! ----------NASTRTHT--ST------ L +-----------------------------3l2c_A |
> 1z9c_A:CRYSTAL STRUCTURE OF OHRR BOUND TO THE OHRA PROMOTER: STRUCTURE OF MARR FAMILY PROTEIN WITH OPERATOR DNA
--DCLT--AGTTRG----RG--RA---- L +-----------------------------5h3r_A +-1 ----RGTCTA--RGNT------RT---- L +-2 +-----------------------------4fx4_B ! ! ----RGSTRTSTHG--------RA---- L +-3 +-----------------------------3zpl_B ! ! TT----KATTQTTG--LTRTKA--FTYT L --4 +-----------------------------2p7c_B ! ----------------YG---------- +-----------------------------3eyi_B |
> 1zla_C:X-RAY STRUCTURE OF A KAPOSI'S SARCOMA HERPESVIRUS LANA PEPTIDE BOUND TO THE NUCLEOSOMAL CORE
--RA---- +1zla_C +--------------1 --RG---- +----2 +8ox0_C ! ! --RA--RA +-3 +--------------6a5l_g ! ! --RG---- +---4 +-------------------5x0y_G ! ! --RG---- +-5 +---------------------8jla_C ! ! ----RA-- +-6 +-------------------------6g0l_D ! ! LCRT---- --7 +--------------------------8hr1_E ! --RT---- +--------------------------8grq_A |
> 1zlk_A:CRYSTAL STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS HYPOXIC RESPONSE REGULATOR DOSR C-TERMINAL DOMAIN-DNA COMPLEX
----------------YG---- +-----------------------------3eyi_B +-1 --SG--PTPGTT---------- L +-2 +-----------------------------7d98_Q ! ! TT----KATTQTTG--LTRTKA L --3 +-----------------------------2p7c_B ! --DCLT--AG--TTRG--RG-- L +-----------------------------5h3r_A |
> 1zq3_P:NMR SOLUTION STRUCTURE OF THE BICOID HOMEODOMAIN BOUND TO THE CONSENSUS DNA BINDING SITE TAATCC
--RTQTVAQTNA------ L +8osb_E +---------------1 RART--VTKGNA--KA-- L +---2 +2lkx_A ! ! --RT--IAQCNAMG---- L +---3 +---------------1b72_A ! ! ------NCICNARGRG-- L +-----4 +-------------------4xrm_B ! ! --RC--IAQCNAYC---- L --5 +-----------------------3rkq_B ! ------------YCFAKC L +-----------------------------6pe2_B |
> 2a07_J:CRYSTAL STRUCTURE OF FOXP2 BOUND SPECIFICALLY TO DNA.
------------------NAST--RGHT--STLT-------- L +------7cby_C +-----------1 ------ST----------NAST--RTHT--ST---------- L +---2 +------3l2c_A ! ! --------RGSTRT--STHG----------------RA---- L +-3 +------------------3zpl_B ! ! RT--LA--NTHGTTET--YTRG-------------------- L +-4 +----------------------1f4k_B ! ! --TT--------KATT--QTTG----LTRT----KA--FTYT L +--5 +------------------------2p7c_B ! ! --------------KT----RGAT--RGNT------------ L --6 +--------------------------8smh_F ! --------------------------YG-------------- +-----------------------------3eyi_B |
> 2agp_B:FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDE SELECTION AND PYROPHOSPHOROLYSIS
----VTFT----AT------PC----------ST----------LA--------RART--RG +-----------------------------1jx4_A +-5 ----VC------AC------------------------------LG----SC--------RA +-6 +-----------------------------4fbt_A ! ! ----VT------AT------PC----------------------LA----------RT--RA ! +-----------------------------4ruc_A ! ------FT------------PT----------ST----------LT--IT------RG--RA ! +2agp_B --7 +---------------1 FCYC----------TTAT----SCICDCEC--ST----------------SG----RC--RT ! +----2 +4tqr_A ! ! ! ----QT--WA------RTST--------------ST--PATA----LT----RG--MTFT-- ! +-------3 +---------------3jaa_A ! ! ! ----------ST--------WG--------------DTWC--MG------------------ +-4 +--------------------6x6z_A ! ------------------------------KT------------------------------ +----------------------------7c97_K |
> 2c6y_A:CRYSTAL STRUCTURE OF INTERLEUKIN ENHANCER-BINDING FACTOR 1 BOUND TO DNA
----------------NASTRGHT--STLT------ L +------7cby_C +-----------1 ------ST--------NASTRTHT--ST-------- L +---2 +------3l2c_A ! ! RT--LA--NTHGTTETYTRG---------------- L +-3 +------------------1f4k_B ! ! ----------RGSTRTSTHG------------RA-- L +----4 +----------------------3zpl_B ! ! --TT--------KATTQTTG--LTRT----KA--FT L --5 +------------------------2p7c_B ! --------------SA----------------RG-- +-----------------------------2xcr_U |
> 2d5v_B:CRYSTAL STRUCTURE OF HNF-6ALPHA DNA-BINDING DOMAIN IN COMPLEX WITH THE TTR PROMOTER
----------RTQTVAQTNA---- L +8osb_E +--------------1 ----------RT--VTKGNA--KA L +----2 +2lkx_A ! ! ----------RT--IAQCNAMG-- L +--3 +--------------1b72_A ! ! --------------NCICNARGRG L +-4 +-------------------4xrm_B ! ! ----------RC--IAQCNAYC-- L --5 +----------------------3rkq_B ! SGQATGCARG-------------- L +------------------------8g87_X |
> 2drp_D:THE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITION
--QA----TC----RA--SCDC--VT-- +-----------------------------5yeg_A +-1 ------HTHGRGTGTT--ACNA--KGRG L +-2 +-----------------------------1tf3_A ! ! --EC--SCKGRG--LT--FCNA------ L +-3 +-----------------------------1ubd_C ! ! --RGSTDCHGTT--RG--DAEG--RG-- L +-4 +-----------------------------6b0o_A ! ! --QAHTTT--QA--TTLAHGTCDTRG-- L +-5 +-----------------------------1g2d_F ! ! RGST--YGYC----QC--TGSTRGYT-- --6 +-----------------------------4is1_C ! --RGSTDCHGTT--RG--DAEG--RG-- L +-----------------------------5kl3_A |
> 2fr4_L:STRUCTURE OF FAB DNA-1 COMPLEXED WITH A STEM-LOOP DNA LIGAND
----YTYTNTEC--HTYT------ +2fr4_L +--------------1 NAYAYA--TA--SA------HA-- +-----2 +3vw3_L ! ! ----------ST----------WG --3 +---------------7v5n_E ! ------------------YA---- +---------------------3vw3_H |
> 2hdd_A:ENGRAILED HOMEODOMAIN Q50K VARIANT DNA COMPLEX
QTVAQTNA------ L +8osb_E +---------------1 --VTKGNA--KA-- L +---2 +2lkx_A ! ! --IAQCNAMG---- L +---3 +---------------1b72_A ! ! --NCRG-------- L +-4 +-------------------4xrm_B ! ! --IAQCNAYC---- L +----5 +-----------------------3rkq_B ! ! --VTCCNAQA--RT L --6 +------------------------8g87_X ! --------YCFAKC L +-----------------------------6pe2_B |
> 2hos_A:PHAGE-SELECTED HOMEODOMAIN BOUND TO UNMODIFIED DNA
--VTKGNA--KA-- L +-----------------------------2lkx_A ! QTVAQTNA------ L ! +8osb_E ! +--------------1 --IAQCNAMG---- L +-5 +----2 +1b72_A ! ! ! ! --NCICRG------ L ! ! +--3 +---------------4xrm_B ! ! ! ! --IAQCNAYC---- L --6 +-----4 +--------------------3rkq_B ! ! --VTCCNAQA--RT L ! +-----------------------8g87_X ! --------YCFAKC L +-----------------------------6pe2_B |
> 2ihn_A:CO-CRYSTAL OF BACTERIOPHAGE T4 RNASE H WITH A FORK DNA SUBSTRATE
--IG--STTGLTVA------------NCSGKCFGNGKAKANAKASA--STWTECFCHA----MAHT----RTKCLCNGSC +-------------2ihn_A +---------1 ----------FCRT--KCHANGSA--------------LT------KC----------FTFC----RTLA---------- L +--2 +-------------5hp4_A ! ! IT--YTQT--KT-------------------------------------------------------------------- --3 +-----------------------4q0w_A ! ------------AGVG--QC----QCMC---------------------------------------------------- +--------------------------5zoe_A |
> 2isz_B:CRYSTAL STRUCTURE OF A TWO-DOMAIN IDER-DNA COMPLEX CRYSTAL FORM I
--QT--PTAT--TT----------YT---- +8pw0_A +---------------1 ------RGSTRTSTHG------RA------ L +-----2 +3zpl_B ! ! ----DCLT--AGTTRG--RG---------- L +-3 +---------------5h3r_A ! ! TT------KATTQTTGLTRTKA----FTYT L +-4 +---------------------2p7c_B ! ! ----SG--PTPGTT----------HG---- L --5 +-----------------------7d98_Q ! ----------------YG------------ +-------------------------3eyi_B |
> 2n8a_A:1H, 13C AND 15N CHEMICAL SHIFT ASSIGNMENTS AND SOLUTION STRUCTURE FOR PARP-1 F1F2 DOMAINS IN COMPLEX WITH A DNA SINGLE-STRAND BREAK
--RGSTFGVTPCRG--QCLCIG L +------------2n8a_A +--------1 ------------RGKG--LCIG +--2 +------------3odc_B ! ! --RG--FCVGPG---------- --3 +---------------------3od8_G ! STRG------------------ +------------------------4av1_A |
> 2xhb_A:CRYSTAL STRUCTURE OF DNA POLYMERASE FROM THERMOCOCCUS GORGONARIUS IN COMPLEX WITH HYPOXANTHINE-CONTAINING DNA
PIPIVIIIPGFIKGRINTNTFCQGMGDARAYT--RG--WGDG--------WG----------------------------RGDA-- L +--------------2xhb_A +--------2 ------IT------------------------------------QGQAVT--FTIGNGSGYGFT--VAKTLT-------------- L ! ! +------------3iay_A +----3 +-1 --------------------------------DG--FA----FG----------------------WC----------KT------ ! ! +------------2dtu_A --4 ! --------------------------RT----------------RC--------LC--SCYG--FAYA------------------ L ! +-----------------------8g9l_A ! ------------------------------------------------------------------------RTPTST------KT +----------------------------7uin_D |
> 3g73_A:STRUCTURE OF THE FOXM1 DNA BINDING
--------------NAST--RGHT--STLT------ L +------7cby_C +-----------1 --------------NAST--RTHT--ST-------- L +---2 +------3l2c_A ! ! ----------STRTSTHG--------------RA-- L +-3 +------------------3zpl_B ! ! RT--LANTHGTTETYTRG------------------ L +-4 +----------------------1f4k_B ! ! --TT------KATTQTTG----LTRT----KAFTYT L --5 +------------------------2p7c_B ! ------------KT--RGAT--RGNT---------- L +--------------------------8smh_F |
> 3iay_A:TERNARY COMPLEX OF DNA POLYMERASE DELTA
------IT--------------SAKT------------------QGQAVT--FTITSAQTIGNGSGYGFT--VAKTLTKARGRCNC L +------------3iay_A +----------1 --------------------------------DG--FA----FG----------------------------------KT------ ! +------------2dtu_A --3 PIPIVIIIPGFIKGRINTNTFC----DARAYT--RG--WGDG--------WG---------------------------------- L ! +---------------------2xhb_A +-2 --------------------------------------------RC--------------LC--SCYG--FAYA----KA--RG-- L +---------------------8g9l_A |
> 4cyc_A:CRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND UBDA MOTIFS
RT--IAQCNAMG---- L +-----------------------------1b72_A ! RTQTVAQTNA------ L ! +8osb_E ! +---------------1 RT--VTKGNA--KA-- L +-5 +----2 +2lkx_A ! ! ! ! ----NCICNARGRG-- L ! ! +--3 +---------------4xrm_B ! ! ! ! RC--IAQCNAYC---- L --6 +-----4 +--------------------3rkq_B ! ! ----VTCCNAQA--RT L ! +-----------------------8g87_X ! ----------YCFAKC L +-----------------------------6pe2_B |
> 4m8o_A:TERNARY COMPLEX OF DNA POLYMERASE EPSILON WITH AN INCOMING DATP
------IT----------------------------QGQAVT--FTITQTIGNGSGYGFT--VAKTLTRC--NC L +------------3iay_A +----------1 ------------------------DG--FA----FG--------------------------WC---------- ! +------------2dtu_A --3 PIPIVIIIPGFIKGRINTNTFCYT--RG--WGDG--------WG--------------------------DA-- L ! +---------------------2xhb_A +-2 ------------------------------------RC------------LC--SCYG--FAYA----RG---- L +---------------------8g9l_A |
> 4x23_D:CRYSTAL STRUCTURE OF CENP-C IN COMPLEX WITH THE NUCLEOSOME CORE PARTICLE
--RA-- +6g0l_D +---------------2 RC---- ! +6qld_f +-7 RG---- ! ! +-----------8txv_G ! +---5 RT---- +-------8 +-----------8hr1_E ! ! RA---- ! ! +7xsx_a ! +-----------------3 RT---- ! +8grq_A +--10 RA---- ! ! +1zla_C ! ! +-------------4 RA--RA ! ! ! +6a5l_g ! ! +-------6 RT---- -11 ! ! ! +8u14_G ! +--9 +--------------1 RG---- ! ! +8ox0_C ! ! RG---- ! +----------------------8jla_C ! RG---- +-----------------------------5x0y_G |
> 5bs8_A:CRYSTAL STRUCTURE OF A TOPOISOMERASE II COMPLEX
--SA------------RGIG---------- +-----------------------------2xcr_U +-1 RCST--------------IA---------- +-2 +-----------------------------3ksb_B ! ! ----NASTRGHTSTLT-------------- L --3 +-----------------------------7cby_C ! --------------------NTATATSTRG L +-----------------------------1dh3_C |
> 5gtc_H:CRYSTAL STRUCTURE OF COMPLEX BETWEEN DMAP-SH CONJUGATED WITH A KAPOSI'S SARCOMA HERPESVIRUS LANA PEPTIDE (5-15) AND NUCLEOSOME CORE PARTICLE
----RA-- +6g0l_D +-1 --RC---- +-------------6 +6qld_f ! ! LC------ +----9 +-8bvw_e ! ! --RG---- ! +---------------8jla_C ! --RT---- +---11 +----------8u14_G ! ! +-----7 LARG---- ! ! ! ! +7unc_a ! ! ! +----------5 LCRT---- ! +--10 +8hr1_E ! ! --RA---- ! ! +7xsx_a -13 +----------------2 --RT---- ! +8grq_A ! --RA---- ! +1zla_C ! +--------------3 --RG---- ! +---------8 +8ox0_C ! ! ! --RG---- +-12 +--------------5x0y_G ! --RG---- ! +8txv_G +------------------------4 --RA--RA +6a5l_g |
> 5omx_C:X-RAY STRUCTURE OF THE H2A-N38C NUCLEOSOME CORE PARTICLE
--RT +---------7jzv_N +-------------------2 --RC ! ! +---6qld_f +-3 +-----1 LC-- ! ! +---8bvw_e --4 ! --RT ! +-----------------------------8com_C ! --RT +-----------------------------7on1_e |
> 5x0y_D:COMPLEX OF SNF2-NUCLEOSOME COMPLEX WITH SNF2 BOUND TO SHL2 OF THE NUCLEOSOME
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +-----4 ----RG---- ! ! +----5x0y_G ! +-------6 ----RA---- ! ! ! +1zla_C -11 ! +---------3 ----RA--RA ! +------9 +6a5l_g ! ! ! ----RG---- ! ! ! +8txv_G ! ! ! +--------------1 ----RG---- ! ! +---8 +8ox0_C ! ! ! ----RG---- +--10 +--------------8jla_C ! ----RA---- ! +7xsx_a ! +------2 ----RT---- ! +------5 +8grq_A ! ! ! ----RT---- +-----------7 +------8u14_G ! --LCRT---- +-------------8hr1_E |
> 5x0y_G:COMPLEX OF SNF2-NUCLEOSOME COMPLEX WITH SNF2 BOUND TO SHL2 OF THE NUCLEOSOME
--RT +-----------------------------7jzv_N +-1 --RT +-2 +-----------------------------8com_C ! ! --RC +-3 +-----------------------------7nkx_a ! ! --RT +-4 +-----------------------------7on1_e ! ! --RA --5 +-----------------------------5mlu_F ! IT-- +-----------------------------6r8y_H |
> 5xon_W:RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH SPT4/5 AND TFIIS
TAFCAG----------RCFADARAEGACRCNCMCAC---------- L +--------------------6dg0_A +--------2 ------NCKGCAYGRA------------------------------ L ! ! +---2ayg_A --3 +----------------1 --------KGCGFT-------------------------------- L ! +---2bop_A ! ------------------------------------RAYACAPAWA +-----------------------------3jca_H |
> 6a5l_d:RNA POLYMERASE II ELONGATION COMPLEX STALLED AT SHL(-1) OF THE NUCLEOSOME, WITH FOREIGN DNA
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------3 ----RG---- ! +---6 +----5x0y_G ! ! ! ----RG---- ! ! +-----------------8jla_C -10 ! ----RA---- ! ! +1zla_C ! +--8 +-------------2 ----RA--RA ! ! ! ! +6a5l_g ! ! ! +-----5 ----RT---- ! ! ! ! ! +8u14_G ! ! +-7 +--------------1 ----RG---- +----9 ! +8ox0_C ! ! --LCRT---- ! +--------------------8hr1_E ! ----RG---- ! +-----------8txv_G +------------4 ----RT---- +-----------8grq_A |
> 6c0w_H:CRYO-EM STRUCTURE OF HUMAN KINETOCHORE PROTEIN CENP-N WITH THE CENTROMERIC NUCLEOSOME CONTAINING CENP-A
----RA-- +6g0l_D +------------2 --RC---- ! +6qld_f +-8 --RA---- ! ! +7xsx_a ! ! +-4 LC------ ! +------------5 +8bvw_e +--9 ! --RT---- ! ! +8grq_A ! ! --RG---- ! ! +8txv_G +------11 +--------------3 --RG---- ! ! +8ox0_C ! ! LARG---- ! ! +7unc_a ! +----------------7 LCRT---- -13 +8hr1_E ! --RA---- ! +1zla_C ! +--------------6 --RA--RA ! +-------10 +6a5l_g ! ! ! --RG---- +-12 +---------------8jla_C ! --RT---- ! +8u14_G +------------------------1 --RG---- +5x0y_G |
> 6cnb_P:YEAST RNA POLYMERASE III INITIAL TRANSCRIBING COMPLEX
--------------YG---------- +-----------------------------3eyi_B +-1 TT----KATTQTTGLTRTKA--FTYT L +-2 +-----------------------------2p7c_B ! ! ----RGSTRTSTHG------RA---- L --3 +-----------------------------3zpl_B ! --DCLT--AGTTRG--RG--RA---- L +-----------------------------5h3r_A |
> 6e0p_A:CRYO-EM STRUCTURE OF THE CENTROMERIC NUCLEOSOME (NATIVE ALPHA SATELLITE DNA) IN COMPLEX WITH A SINGLE CHAIN ANTIBODY FRAGMENT
--RT---- +-----------------------------8grq_A +-6 LCRT---- +-7 +-----------------------------8hr1_E ! ! ----RA-- +-8 +-----------------------------6g0l_D ! ! --RG---- ! +-----------------------------8ox0_C ! --RG---- ! +8txv_G --9 +-1 --RA---- ! +-------------------3 +1zla_C ! ! ! --RA--RA ! +--4 +6a5l_g ! ! ! --RG---- +------5 +-------------------8jla_C ! --RT---- ! +8u14_G +----------------------2 --RG---- +5x0y_G |
> 6el8_A:CRYSTAL STRUCTURE OF THE FORKHEAD DOMAIN OF HUMAN FOXN1 IN COMPLEX WITH DNA
------------NAST--RGHT--STLT------ L +------7cby_C +-----------1 ------------NAST--RTHT--ST-------- L +---2 +------3l2c_A ! ! RT--LANTTTETYTRG------------------ L +-3 +------------------1f4k_B ! ! --------STRTSTHG------------------ L +-4 +----------------------3zpl_B ! ! --TT----KATTQTTG----LTRT----KAFTYT L +--5 +------------------------2p7c_B ! ! ----------KT--RGAT--RGNT---------- L +-6 +--------------------------8smh_F ! ! ----------SA---------------------- --7 +-----------------------------2xcr_U ! --------------------YG------------ +-----------------------------3eyi_B |
> 6fq8_D:CLASS 3 : TRANSLOCATED NUCLEOSOME
--RA-- +-----------------------------6g0l_D +-8 RG---- ! +-----------------------------5x0y_G ! RG---- ! +8txv_G ! +--------------1 RG---- --9 +--------4 +8ox0_C ! ! ! RG---- ! ! +--------------8jla_C ! ! RT---- ! ! +8u14_G +-----7 +-2 RA---- ! +----------------3 +1zla_C ! ! ! RA--RA ! +--5 +6a5l_g ! ! ! RT---- +--6 +-----------------8hr1_E ! RT---- +--------------------8grq_A |
> 6ftx_B:STRUCTURE OF THE CHROMATIN REMODELLING ENZYME CHD1 BOUND TO A UBIQUITINYLATED NUCLEOSOME
--RG---- +8txv_G +--------------1 --RG---- ! +5x0y_G +-4 --RT---- ! ! +8u14_G +--5 +--------------2 --RG---- ! ! +8ox0_C +----6 ! --RA--RA ! ! +--------------6a5l_g ! ! --RG---- ! +-----------------8jla_C +-8 --RA---- ! ! +---------1zla_C ! ! +----------3 ----RA-- --9 +-7 +---------6g0l_D ! ! LCRT---- ! +--------------------8hr1_E ! --RT---- +-----------------------8grq_A |
> 6g0l_D:STRUCTURE OF TWO MOLECULES OF THE CHROMATIN REMODELLING ENZYME CHD1 BOUND TO A NUCLEOSOME
----RC +---6qld_f +----------------1 --LC-- +--------2 +---8bvw_e ! ! ----RT +-3 +--------------------7jzv_N ! ! ----RT +-4 +-----------------------------8com_C ! ! ----RT --5 +-----------------------------7on1_e ! RGIT-- +-----------------------------6r8y_H |
> 6iod_A:THE STRUCTURE OF UDGX IN COMPLEX WITH SINGLE-STRANDED DNA
DGDG------------LGRG---- +-----------6iod_A +--------1 ------RA----RCQTNT--QGTC +---2 +-----------2dp6_A ! ! ------------------RG---- +-3 +--------------------1mwi_A ! ! ----KT----CGQT--PG------ --4 +------------------------4z47_A ! --------TT-------------- +--------------------------4yig_E |
> 6jma_C:CRYO-EM STRUCTURE OF DOT1L BOUND TO H2B UBIQUITINATED NUCLEOSOME
--RT +---------7jzv_N +-------------------2 --RC ! ! +---6qld_f +-3 +-----1 LC-- ! ! +---8bvw_e --4 ! --RT ! +-----------------------------8com_C ! --RT +-----------------------------7on1_e |
> 6kw4_Y:THE CLASSB RSC-NUCLEOSOME COMPLEX
EG--SCRG L +-----6kw4_Y +-----------1 ------RC +-------2 +-----6ryu_V ! ! --NG--RC --3 +-----------------8wha_K ! ET------ +-------------------------7aud_E |
> 6kxv_A:CRYSTAL STRUCTURE OF A NUCLEOSOME CONTAINING LEISHMANIA HISTONE H3
--RT---- +-----------------------------8grq_A +-7 LCRT---- ! +-----------------------------8hr1_E ! --RG---- ! +8txv_G ! +-1 --RA---- ! +---------2 +1zla_C +-8 ! ! --RG---- ! ! +----3 +8ox0_C ! ! ! ! --RG---- ! ! +------4 +---------5x0y_G ! ! ! ! --RG---- --9 ! +--5 +--------------8jla_C ! ! ! ! ----RA-- ! +----6 +---------------------6g0l_D ! ! --RA--RA ! +------------------------6a5l_g ! --RT---- +-----------------------------8u14_G |
> 6lui_A:CRYSTAL STRUCTURE OF THE SAMD1 WH DOMAIN AND DNA COMPLEX
TT----KATTQTTG----LTRT----KAFTYT L +-----------------------------2p7c_B +-2 ----------NAST--RTHT--ST-------- L ! +-----------------------------3l2c_A +-3 ----------NAST--RGHT--STLT------ L ! ! +--------------7cby_C +-4 +--------------1 ------QCKT--RGAT--RGNT---------- L ! ! +--------------8smh_F +-5 ! ------------------YG------------ ! ! +-----------------------------3eyi_B --6 ! --ITRGECSCSGKG------------------ L ! +-----------------------------5i2d_R ! --------SA---------------------- +-----------------------------2xcr_U |
> 6nn6_D:STRUCTURE OF DOT1L-H2BK120UB NUCLEOSOME COMPLEX
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +-----2 ----RG---- ! ! +----5x0y_G ! +-----3 ----RA---- -10 ! ! +1zla_C ! +-6 +----------1 ----RG---- ! ! ! +8ox0_C ! +-------7 ! ----RA--RA ! ! ! +----------------6a5l_g ! ! ! ----RG---- ! ! +------------------8jla_C +--9 ----RT---- ! +-----------8u14_G ! +--------5 --LCRT---- ! ! +-----------8hr1_E +-----8 ----RG---- ! +-----------8txv_G +--------4 ----RT---- +-----------8grq_A |
> 6pwe_G:CRYO-EM STRUCTURE OF NUCLEOSOME CORE PARTICLE
--RA---- +1zla_C +--------------4 --RA--RA ! +6a5l_g ! --RT---- +-9 +8u14_G ! ! +--------------1 --RG---- ! ! ! +5x0y_G ! +-8 --RG---- +-------10 ! +8txv_G ! ! +--------------2 --RG---- ! ! +8ox0_C ! ! --RG---- ! +--------------8jla_C ! --RC---- ! +---6qld_f -13 +-------6 ----RA-- ! ! ! +6g0l_D ! ! +--5 LC------ ! +------7 +8bvw_e ! ! ! --RA---- ! ! ! +7xsx_a ! +-11 +-----------3 --RT---- ! ! ! +8grq_A +-12 ! LARG---- ! +------------------7unc_a ! LCRT---- +--------------------8hr1_E |
> 6pwe_H:CRYO-EM STRUCTURE OF NUCLEOSOME CORE PARTICLE
----RA-- +6g0l_D +------------------1 --RC---- +--10 +6qld_f ! ! --RG---- ! +------------------8jla_C +-11 --RT---- ! ! +---------------8u14_G ! ! ! --RA---- ! ! ! +7xsx_a ! +------8 +-2 --RG---- ! ! +----------3 +7unc_a ! ! ! ! --RT---- ! +----6 +8grq_A -13 ! --RT---- ! +----------8hr1_E ! RT------ ! +----9fgq_D ! +------------5 --RG---- ! +------9 +----5x0y_G ! ! ! --RG---- ! ! +-----------------8ox0_C +-12 --RA---- ! +--------------1zla_C +---------7 --RG---- ! +8txv_G +--------------4 --RA--RA +6a5l_g |
> 6pww_K:CRYO-EM STRUCTURE OF MLL1 IN COMPLEX WITH RBBP5 AND WDR5 BOUND TO THE NUCLEOSOME
RG------------ +8jh2_e +---------------2 RG------RT---- +--------7 +8grq_A ! ! RG--LC--RT---- ! +---------------8hr1_E ! --------RA---- ! +--7xsx_a ! +-------------4 ----------RA-- +-10 ! +--6g0l_D ! ! ! --------RA---- ! ! +----8 +1zla_C ! ! ! ! +-------------3 --------RA--RA ! ! ! ! ! +6a5l_g ! ! ! +-6 --------RG---- ! ! ! ! +8txv_G +-11 +--9 ! +--------------1 --------RG---- ! ! ! +-5 +8ox0_C ! ! ! ! --------RG---- ! ! ! +--------------5x0y_G +-12 ! ! --------RG---- ! ! ! +---------------------8jla_C ! ! ! --------RT---- -13 ! +---------------------------8u14_G ! ! --RAAANA------ ! +-----------------------------1jfi_B ! --------RG---- +-----------------------------7e9c_G |
> 6px1_C:SET2 BOUND TO NUCLEOSOME
--RG---- +-----------------------------5x0y_G ! --RG---- ! +8txv_G ! +--------------1 --RG---- -10 +--------5 +8ox0_C ! ! ! --RA--RA ! ! +--------------6a5l_g ! ! --RT---- ! ! +8u14_G +-----9 +-2 --RA---- ! +----------------3 +1zla_C ! ! ! --RG---- ! +---6 +8jla_C ! ! ! LCRT---- ! ! +-----------------8hr1_E +-8 --RG--RG ! +------8kcb_A ! +-----------4 ----RA-- +--7 +------6g0l_D ! --RT---- +------------------8grq_A |
> 6qil_A:THE COMPLEX STRUCTURE OF HSROSR-S1 (VNG0258H/ROSR-S1)
--TT------KATT--QTTG----LTRT----KA--FTYT L +-----------------------------2p7c_B ! ------------------NAST--HT--STLT-------- L ! +------7cby_C +-4 +-----------1 ----------------NAST--RTHT--ST---------- L ! ! +-----2 +------3l2c_A ! ! ! ! RT--LANTHGTTET--YTRG-------------------- L +-5 +----3 +------------------1f4k_B ! ! ! ----------QCKT----RGAT--RGNT------------ L ! ! +------------------------8smh_F +-6 ! ------------------------YG-------------- ! ! +-----------------------------3eyi_B --7 ! ------SG--PTPG--TT----------------HG---- L ! +-----------------------------7d98_Q ! ------RG----DTVT----STRG----------WT---- L +-----------------------------6lxn_A |
> 6qld_f:STRUCTURE OF INNER KINETOCHORE CCAN-CENP-A COMPLEX
--RC---- +6qld_f +---------5 --RT---- ! ! +8u14_G +----8 +-1 --RG---- ! ! +8ox0_C ! ! --RA---- ! +----------1zla_C +-11 --RG---- ! ! +8txv_G ! ! +--------------2 --RG---- +-12 +-9 +5x0y_G ! ! ! --RA--RA ! ! +--------------6a5l_g +-13 ! --RG---- ! ! +-----------------8jla_C ! ! ----RA-- ! ! +-6g0l_D ! +------------------6 LC------ ! +-8bvw_e -14 LARG---- ! +7unc_a ! +--3 --RT---- ! +-----------7 +8grq_A ! ! ! --RA---- +------10 +--7xsx_a ! --RA---- ! +8rbx_M +--------------4 LCRT---- +8hr1_E |
> 6r1t_D:STRUCTURE OF LSD2/NPAC-LINKER/NUCLEOSOME CORE PARTICLE COMPLEX: CLASS 1, FREE NUCLESOME
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------4 ----RG---- ! ! +----5x0y_G -10 +-5 ----RA---- ! ! ! +1zla_C ! +--6 +-----------------1 ----RG---- ! ! ! +8ox0_C ! ! ! ----RT---- ! ! +-------------------8grq_A +------9 ----RG---- ! +8txv_G ! +---------------------2 ----RG---- ! ! +8jla_C +-8 ----RT---- ! +8u14_G ! +-------------------3 ----RA--RA +-7 +6a5l_g ! --LCRT---- +--------------------8hr1_E |
> 6r25_E:STRUCTURE OF LSD2/NPAC-LINKER/NUCLEOSOME CORE PARTICLE COMPLEX: CLASS 3
--RG--------RG------ +-----------------------------6iy2_A ! --RG--------RT------ ! +7zs9_e ! +-----------------------1 --RG--------RT------ ! ! +8grq_A ! ! --RT--RG------------ ! ! +---------6pww_K ! ! +------9 ------------RG------ ! ! ! +---------5x0y_G ! ! ! --RT----LA--RG------ ! ! ! +--------------7unc_a ! ! +-13 ! ----------------KG-- +-19 ! ! ! +-10 +7nkx_f ! ! ! ! ! ! ! +------4 ------------RG------ ! ! ! ! ! ! ! ! +8jla_C ! ! +-17 ! ! ! +------7 ------------RA------ ! ! ! ! ! +-11 ! +1zla_C ! ! ! ! ! ! +-------3 ------------RG------ ! ! ! ! +-14 ! +8ox0_C ! ! ! ! ! ! ! --------EA----RG---- ! ! ! ! ! ! ! +--------7n8n_A ! ! ! ! ! ! +------8 ------------RA----RA ! ! ! ! ! ! +--------6a5l_g ! ! ! ! +-15 ! --------LT---------- ! ! ! ! ! ! ! +-----7ywx_E ! +-18 ! ! ! +------------6 --------------RA---- +-20 ! ! ! ! +-----6g0l_D ! ! ! +-16 ! HGRGYG--QC--RG------ ! ! ! ! +-------------------7y7i_E ! ! ! ! --RCYA------RG------ ! ! ! ! +7ccr_A ! ! ! +---------------------2 --RG----LC--RT------ ! ! ! +8hr1_E ! ! ! ------------RC------ +-21 ! ! +--7xyf_B ! ! ! ! +-------------5 ------------RT------ ! ! ! +--------12 +--7kbd_C ! ! ! ! ----------IT-------- ! ! ! +----------------3wkj_D +-22 ! ! --RG---------------- ! ! ! +-----------------------------5z3u_A ! ! ! HARA----LT--RC------ -23 ! +-----------------------------3kwq_E ! ! HARAYT--LT--RC------ ! +-----------------------------4xzq_E ! ------------RG------ +-----------------------------3w99_F |
> 6r2v_B:ARABIDOPSIS NF-Y/CCAAT-BOX COMPLEX
--RA-- +-----------------------------6g0l_D +-7 RT---- +-8 +-----------------------------8grq_A ! ! RT---- ! +-----------------------------8hr1_E ! RA---- ! +1zla_C --9 +-------------2 RA--RA ! +----4 +6a5l_g ! ! ! RG---- ! +-------5 +--------------5x0y_G ! ! ! RG---- ! ! +-------------------8jla_C +-6 RT---- ! +8u14_G ! +--------------1 RG---- +------------3 +8ox0_C ! RG---- +--------------8txv_G |
> 6r2v_C:ARABIDOPSIS NF-Y/CCAAT-BOX COMPLEX
----RG---- +8txv_G +--------------1 ----RG---- +----5 +5x0y_G ! ! ----RG---- +---7 +--------------8ox0_C ! ! ----RA---- ! ! +1zla_C +-9 +-------------------3 ----RA--RA ! ! +6a5l_g ! ! ----RG---- ! +-----------------------8jla_C ! RT-------- -10 +9fgq_D ! +------------------2 ------RA-- ! +-6 +6g0l_D ! ! ! ----RT---- +-----8 +------------------8grq_A ! ----RT---- ! +----------8u14_G +--------4 --LCRT---- +----------8hr1_E |
> 6r8y_H:CRYO-EM STRUCTURE OF NCP-6-4PP(-1)-UV-DDB
------------RA---- +-----------------------------6g0l_D +-17 RT---------------- +-18 +-----------------------------6nj9_H ! ! RG---------------- +-19 +-----------------------------3x1t_H ! ! ------IT---------- +-20 +-----------------------------3wkj_D ! ! ----------RG------ ! +-----------------------------5x0y_G ! --------------KG-- ! +7nkx_f ! +------4 ----------RG------ ! ! +8jla_C ! +-------6 ----------RA------ ! ! ! +1zla_C ! +-------8 +-------2 ----------RG------ ! ! ! +8ox0_C ! ! ! ----------RA----RA ! ! +---------------6a5l_g ! ! ----------RC------ ! +-10 +--7xyf_B ! ! ! +---------5 ----------RT------ ! ! ! ! +--7kbd_C -21 ! ! +----7 ----------RG------ ! ! ! ! ! +7ccr_A ! ! ! ! +------------3 ------LC--RT------ ! +-11 +-----9 +8hr1_E ! ! ! ! ----------RT------ ! ! ! ! +7zs9_e ! ! ! +-----------------1 ----------RT------ ! +-12 ! +8grq_A ! ! ! ! ----LA----RG------ ! ! ! +------------------------7unc_a ! +-13 ! ------LT--RC------ ! ! ! +---------------------------3kwq_E ! +-14 ! ----------RG------ ! ! ! +---------------------------6iy2_A ! +-15 ! --------KT-------- L ! ! ! +---------------------------7cvo_A +-16 ! --LT------RC------ ! +---------------------------4xzq_E ! --QC------RG------ +----------------------------7y7i_E |
> 6see_H:CLASS2A : CENP-A NUCLEOSOME IN COMPLEX WITH CENP-C CENTRAL REGION
--RA-- +-----------------------------6g0l_D +-8 RG---- ! +-----------------------------8ox0_C ! RT---- ! +8u14_G ! +-1 RA---- ! +---------2 +1zla_C --9 ! ! RG---- ! +-----3 +5x0y_G ! ! ! RA--RA ! +--------5 +---------6a5l_g ! ! ! RG---- ! ! +---------------8jla_C +----7 RG---- ! +-----------8txv_G ! +--------4 RT---- +---6 +-----------8grq_A ! RT---- +--------------------8hr1_E |
> 6sjf_B:CRYO-EM STRUCTURE OF THE RECBCD CHI UNRECOGNISED COMPLEX
----RT--RTKTIAQCNA----RT L +-----------------------------1ig7_A +-1 ------YART--VTQTNAMTKTRT L +-2 +-----------------------------1jgg_B ! ! --------RT--IAQCNAMG---- L +-3 +-----------------------------1b72_A ! ! ------------ITATNA--KT-- +-4 +-----------------------------1du0_A ! ! HTKT-------------------- --5 +-----------------------------2pjr_B ! --------RC--IAQCNAYC---- L +-----------------------------3rkq_B |
> 6t7a_C:STRUCTURE OF HUMAN SOX11 TRANSCRIPTION FACTOR IN COMPLEX WITH A NUCLEOSOME
--RT---- +8u14_G +--------------1 --RG---- ! +5x0y_G +-10 --RT---- ! ! +8smw_G +-11 +--------------2 --RG---- ! ! +8ox0_C +-12 ! --RA--RA ! ! +--------------6a5l_g ! ! --RG---- ! +-----------------8jla_C +-14 --RG---- ! ! +8txv_G ! ! +-----------3 --RA---- ! +--------9 +1zla_C ! ! LCRT---- -15 +-----------8hr1_E ! --RG--RG ! +------8kcb_A ! +------------7 LARG---- ! ! +------7unc_a ! ! --RC---- +--13 +---6qld_f ! +---6 ----RA-- ! ! +---6g0l_D +-----------8 --RA---- ! +7xsx_a ! +-4 LC------ +-------5 +8bvw_e ! --RT---- +8grq_A |
> 6t7a_H:STRUCTURE OF HUMAN SOX11 TRANSCRIPTION FACTOR IN COMPLEX WITH A NUCLEOSOME
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------3 ----RG---- ! ! +----5x0y_G -10 +------7 ----RA---- ! ! ! +1zla_C ! ! ! +--------------2 ----RA--RA ! ! +-5 +6a5l_g ! ! ! ----RG---- ! ! +---------------8jla_C +----9 ----RG---- ! +8txv_G ! +-----------------1 ----RG---- ! ! +8ox0_C ! +--6 ----RT---- ! ! ! +-----------8u14_G +---8 +-----4 --LCRT---- ! +-----------8hr1_E ! ----RT---- +--------------------8grq_A |
> 6uph_C:STRUCTURE OF A YEAST CENTROMERIC NUCLEOSOME AT 2.7 ANGSTROM RESOLUTION
--RG---- +-----------------------------5x0y_G +-11 --RG---- ! +-----------------------------8ox0_C ! --RT---- ! +8u14_G ! +-----------1 --RA---- ! +----6 +1zla_C ! ! ! LCRT---- -12 +-7 +-----------8hr1_E ! ! ! --RT---- ! ! ! +8smw_G ! +---9 +----------------3 --RG---- ! ! ! +8jla_C ! ! ! --RG---- ! ! ! +8txv_G ! ! +------------------4 --RA--RA +-----10 +6a5l_g ! --RG--RG ! +------8kcb_A ! +----------5 ----RA-- ! ! +------6g0l_D +----8 --RA---- ! +7xsx_a +-----------------2 --RT---- +8grq_A |
> 6uph_D:STRUCTURE OF A YEAST CENTROMERIC NUCLEOSOME AT 2.7 ANGSTROM RESOLUTION
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------3 ----RG---- ! ! +----5x0y_G ! +-----6 ----RA---- ! ! ! +1zla_C -10 ! ! +---------------1 ----RG---- ! ! +-5 +8ox0_C ! ! ! ----RG---- ! +-8 +---------------8jla_C ! ! ! ----RG---- ! ! ! +8txv_G ! ! ! +--------------------2 ----RA--RA +----9 +--7 +6a5l_g ! ! ----RT---- ! +--------------------8grq_A ! ----RT---- ! +-----------8u14_G +------------4 --LCRT---- +-----------8hr1_E |
> 6uw0_B:ENGINEERED VARIANT OF I-ONUI MEGANUCLEASE WITH IMPROVED THERMOSTABILITY AND FULLY ALTERED SPECIFICITY TARGETING CHOLERA TOXIN A SUBUNIT
> 6uwj_A:INTERMEDIATE ENGINEERED VARIANT OF I-ONUI MEGANUCLEASE WITH IMPROVED THERMOSTABILITY AND PARTIALLY ALTERED SPECIFICITY
> 6vdk_A:CRYOEM STRUCTURE OF HIV-1 CONSERVED INTASOME CORE
------KT--------QT----PAQG--AGECRGQG---- L +-----------------------------7u32_A +-1 ----RT----------------PATA----QCRG------ L +-2 +-----------------------------6voy_C ! ! TGRTYTTTQT--------------QGTT--ECRCQAAATC L --3 +-----------------------------8b4h_A ! ----------YGLIRG--QIII------------------ +-----------------------------2w36_A |
> 6vgm_D:CRYSTAL STRUCTURE OF DPO4 WITH 8-OXOADENINE (OXOA) AND DTTP*
----VT------AT------PC----------------------LA------RT--RA +-----------------------------4ruc_A ! ------FT------------PT----------ST----------LTIT----RG--RA ! +2agp_B ! +--------------1 ----VC------AC------------------------------LG--SC------RA ! +----2 +4fbt_A ! ! ! ----VTFT----AT------PC----------ST----------LA----RART--RG --7 +--3 +--------------1jx4_A ! ! ! FCYC----------TTAT----SCICDCEC--ST--------------SG--RC--RT ! +-4 +-------------------4tqr_A ! ! ! ----QT--WA------RTST--------------ST----TA--LT--RG--MTFT-- ! +---5 +----------------------3jaa_A ! ! ! ----------ST--------WG--------------DTWC--MG-------------- +-6 +------------------------6x6z_A ! ------------------------------KT-------------------------- +----------------------------7c97_K |
> 6vnp_D:CRYSTAL STRUCTURE OF DPO4 EXTENSION PAST 8-OXOADENINE (OXOA) AND DT
----VT------AT------PC----------------------LA------RT--RA +-----------------------------4ruc_A +-6 ----VC------AC------------------------------LG--SC------RA ! +-----------------------------4fbt_A ! ------FT------------PT----------ST----------LTIT----RG--RA ! +2agp_B ! +--------------1 ----VTFT----AT------PC----------ST----------LA----RART--RG --7 +-----2 +1jx4_A ! ! ! FCYC----------TTAT----SCICDCEC--ST--------------SG--RC--RT ! +-3 +--------------4tqr_A ! ! ! ----QT--WA------RTST--------------ST--PATA----LT----MTFT-- ! +-----4 +--------------------3jaa_A ! ! ! ----------ST--------WG--------------DTWC--MG-------------- +-5 +----------------------6x6z_A ! ------------------------------KT-------------------------- +----------------------------7c97_K |
> 6wig_A:STRUCTURE OF STENOFOLIA PROTEIN HD DOMAIN BOUND WITH DNA
--RT----QTVAQTNA------ L +8osb_E +---------------1 RART------VTKGNA--KA-- L +---2 +2lkx_A ! ! ----------NCICNARGRG-- L +---3 +---------------4xrm_B ! ! --RT------IAQCNAMG---- L +-----4 +-------------------1b72_A ! ! --RC------IAQCNAYC---- L --5 +-----------------------3rkq_B ! ----RCKG----TTTCATDCKG L +-----------------------------4ix7_B |
> 6x0n_f:BRIDGING OF DOUBLE-STRAND DNA BREAK ACTIVATES PARP2/HPF1 TO MODIFY CHROMATIN
------RC------ +7xyf_B +-6 ----------KG-- +--------7 +7nkx_f ! ! ------RG------ +-------9 +--5x0y_G ! ! ------RA----RA +-13 +-----------6a5l_g ! ! ------RT------ ! ! +7kbd_C ! +-------------------2 ------RG------ +-14 +8ox0_C ! ! ------RC------ ! ! +7on1_c ! ! +-1 ------RA------ ! +-------------------5 +1zla_C ! ! ------RG------ ! +8jla_C ! --------RA---- ! +7n8n_A +-----16 +--------------3 ------RT------ ! ! ! +8grq_A ! ! +-10 ------RG------ ! ! ! ! +7ccr_A ! ! +-11 +--------------4 --LC--RT------ ! ! ! ! +8hr1_E ! ! +-12 ! --LA--RG------ +-17 ! ! ! +--------------7unc_a ! ! ! ! ! ------RT------ ! ! +-15 +-----------------7zs9_e ! ! ! ----KT-------- L ! ! ! +----7cvo_A +-18 ! +---------------8 --------RA---- ! ! ! +----6g0l_D ! ! ! IT------------ +-19 ! +----------------------------3wkj_D ! ! ! ------RG------ ! ! +----------------------------6iy2_A +-20 ! --LT--RC------ ! ! +----------------------------3kwq_E -21 ! --LT--RC------ ! +----------------------------4xzq_E ! ------RG------ +----------------------------7y7i_E |
> 6x1j_A:THE HOMING ENDONUCLEASE I-WCAI BOUND TO ITS DNA RECOGNITION SEQUENCE
> 6x59_H:THE MOUSE CGAS CATALYTIC DOMAIN BINDING TO HUMAN ASSEMBLED NUCLEOSOME
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------3 ----RG---- ! ! +----5x0y_G -10 +-----7 ----RA---- ! ! ! +1zla_C ! ! ! +--------------2 ----RA--RA ! ! +-5 +6a5l_g ! ! ! ----RG---- ! ! +---------------8jla_C +-----9 ----RT---- ! +8u14_G ! +-----------------1 ----RG---- ! ! +8ox0_C ! +--6 ----RG---- ! ! ! +-----------8txv_G +--8 +-----4 ----RT---- ! +-----------8grq_A ! --LCRT---- +--------------------8hr1_E |
> 6y5d_H:STRUCTURE OF HUMAN CGAS (K394E) BOUND TO THE NUCLEOSOME
----RA-- +-----------------------------6g0l_D ! RT------ ! +-----9fgq_D ! +------4 --RA---- ! ! ! +1zla_C ! +------6 +----3 --RA--RA ! ! ! +6a5l_g ! +--8 ! --RG---- -11 ! ! +------------8jla_C ! ! ! --RT---- ! ! +-------------------8grq_A ! +--9 --RG---- ! ! ! +8txv_G ! ! ! +--------------1 --RG---- ! ! ! ! +8ox0_C ! ! +-------7 --RT---- +--10 ! +8u14_G ! +--------------2 --RG---- ! +5x0y_G ! --RG--RG ! +-------8kcb_A +-----------------5 --RT---- +-------8hr1_E |
> 6y5d_Q:STRUCTURE OF HUMAN CGAS (K394E) BOUND TO THE NUCLEOSOME
LCRT---- +-----------------------------8hr1_E +-9 --RT---- ! +-----------------------------8grq_A ! --RA---- ! +--7xsx_a ! +-------4 ----RA-- ! ! +--6g0l_D -10 +----5 --RA---- ! ! ! +1zla_C ! +---7 +----------2 --RG---- ! ! ! +8ox0_C ! ! ! --RG---- ! ! +---------------8jla_C +---------8 --RT---- ! +8u14_G ! +--------------1 --RG---- ! ! +5x0y_G +----6 --RG---- ! +8txv_G +--------------3 --RA--RA +6a5l_g |
> 6yov_C:OCT4-SOX2-BOUND NUCLEOSOME - SHL+6
--RT---- +8u14_G +--------------1 --RG---- ! +5x0y_G +---9 --RG---- ! ! +8txv_G ! ! +-2 --RA---- +---11 +-------------5 +1zla_C ! ! ! --RG---- ! ! +8ox0_C ! ! --RA--RA ! +------------------6a5l_g ! --RG---- -13 +----------------8jla_C ! +-10 --RC---- ! ! ! +---6qld_f ! ! +------------7 ----RA-- ! ! ! +-6g0l_D ! ! +-6 LC------ ! ! +-8bvw_e +--12 --RA---- ! +7xsx_a ! +-3 LARG---- ! +----------4 +7unc_a ! ! ! --RT---- +--------8 +8grq_A ! LCRT---- +----------8hr1_E |
> 6z6p_F:HDAC-PC-NUC
--RT---- +8u14_G +-1 --RA---- +---------4 +1zla_C ! ! --RG---- +----5 +5x0y_G ! ! --RA--RA +----6 +---------6a5l_g ! ! --RG---- ! ! +8txv_G +-8 +--------------2 --RG---- ! ! +8ox0_C +---9 ! ----RA-- ! ! +-------------------6g0l_D ! ! --RG---- ! +--------------------8jla_C -10 --RA---- ! +8rbx_M ! +--------------3 --RT---- +---------7 +8grq_A ! LCRT---- +--------------8hr1_E |
> 7at8_D:HISTONE H3 RECOGNITION BY NUCLEOSOME-BOUND PRC2 SUBUNIT EZH2.
--RG--------RG------ +-----------------------------6iy2_A +-18 --RG---------------- +-19 +-----------------------------5z3u_A ! ! --RG--------RT------ ! +-----------------------------8grq_A ! --RG--------RT------ ! +------------------7zs9_e ! ! --------EA----RG---- ! ! +---------7n8n_A ! ! +---7 ------------RG------ ! +-11 ! +---------5x0y_G ! ! ! +--8 ------------RC------ ! ! ! ! ! +--7xyf_B ! ! ! ! +----------5 ------------RA------ ! ! ! ! ! +1zla_C ! ! +-10 +--3 ------------RG------ ! +-12 ! +8ox0_C ! ! ! ! ----------------KG-- +-20 ! ! ! +7nkx_f ! ! ! ! +---------------4 ------------RG------ ! ! ! ! +8jla_C ! ! +-13 ! --------LT---------- ! ! ! ! ! +-----7ywx_E ! ! ! ! +------------6 --------------RA---- ! ! ! ! +-----6g0l_D ! ! +-15 ! --RT--RG------------ ! ! ! ! +-------------------6pww_K ! ! ! ! HGRGYG--QC--RG------ ! ! ! ! +--------------------7y7i_E ! ! ! +-14 ------------RT------ +-21 ! +---16 ! +7kbd_C ! ! ! ! ! +--------------------1 ------------RA----RA ! ! ! ! ! +6a5l_g ! ! ! ! ! --RT----LA--RG------ ! ! ! ! ! +--------------7unc_a ! ! +-17 +-------9 --RCYA------RG------ ! ! ! ! +7ccr_A -22 ! ! +--------------2 --RG----LC--RT------ ! ! ! +8hr1_E ! ! ! ----------IT-------- ! ! +---------------------------3wkj_D ! ! HARA----LT--RC------ ! +-----------------------------3kwq_E ! HARAYT--LT--RC------ +-----------------------------4xzq_E |
> 7b0c_A:[4FE-4S]-NSRR COMPLEXED TO 23-BP HMPA1 OPERATOR FRAGMENT
TT------KATT--QTTG--LTRT----KA--FTYT L +-----------------------------2p7c_B +-1 --------------------YG-------------- +-2 +-----------------------------3eyi_B ! ! ----------------NASTHT--STLT-------- L +-3 +-----------------------------7cby_C ! ! --VTSARGTA----RT-------------------- L --4 +-----------------------------6za3_B ! ------PTPG--TT----------------HG---- L +-----------------------------7d98_Q |
> 7b24_C:DTXR-LIKE IRON-DEPENDENT REGULATOR IDER (P39G VARIANT) COMPLEXED WITH COBALT AND ITS CONSENSUS DNA-BINDING SEQUENCE
TT----KATTQTTGLTRTKA--FTYT L +-----------------------------2p7c_B +-1 --------------YG---------- +-2 +-----------------------------3eyi_B ! ! --DCLT--AGTTRG--RG-------- L +-3 +-----------------------------5h3r_A ! ! ----RGSTRTSTHG------------ L --4 +-----------------------------3zpl_B ! --SG--PTPGTT--------HG---- L +-----------------------------7d98_Q |
> 7bhy_A:DNA-BINDING DOMAIN OF DEOR IN COMPLEX WITH THE DNA OPERATOR
RT--LANTHGTTETYTRG-------- L +-----------------------------1f4k_B +-1 ------DCLT--AGTTRG--RG---- L +-2 +-----------------------------5h3r_A ! ! --TT------KATTQTTGLTRT--KA L --3 +-----------------------------2p7c_B ! ----------------------YCFA L +-----------------------------6pe2_B |
> 7bzg_B:STRUCTURE OF BACILLUS SUBTILIS HXLR, WILD TYPE IN COMPLEX WITH FORMALDEHYDE AND DNA
----RGSTRTSTHG------RA---- L +-----------------------------3zpl_B +-1 ------KATTQTTGLTRTKAFT--YT L +-2 +-----------------------------2p7c_B ! ! LANTHGTTETYTRG------------ L +-3 +-----------------------------1f4k_B ! ! --SG--PTPGTT----------HG-- L +-4 +-----------------------------7d98_Q ! ! --DCLT--AGTTRG--RG--RA---- L --5 +-----------------------------5h3r_A ! --------------YG---------- +-----------------------------3eyi_B |
> 7c0j_A:CRYSTAL STRUCTURE OF CHIMERIC MUTANT OF GH5 IN COMPLEX WITH Z-DNA
TT------KATTQTTGLTRTKAFTYT L +-----------------------------2p7c_B +-1 ----------------YG-------- +-2 +-----------------------------3eyi_B ! ! --VTSARGTA--RT------------ L +-3 +-----------------------------6za3_B ! ! ----ITRGECSCSGKG---------- L --4 +-----------------------------5i2d_R ! ----EGRTRGRGYT------------ L +-----------------------------4yo2_A |
> 7c9o_B:CRYSTAL STRUCTURE OF DNA-BOUND CCT/NF-YB/YC COMPLEX (HD1CCT/GHD8/OSNF- YC2)
----RA-- +-----------------------------6g0l_D +-7 --RT---- +-8 +-----------------------------8grq_A ! ! LCRT---- ! +-----------------------------8hr1_E ! --RT---- ! +8u14_G --9 +--------------1 --RG---- ! ! +5x0y_G ! +--4 --RA---- ! ! ! +1zla_C ! ! +-------------3 --RA--RA +-----------6 +6a5l_g ! --RG---- ! +8txv_G ! +--------------2 --RG---- +--5 +8ox0_C ! --RG---- +--------------8jla_C |
> 7c9o_C:CRYSTAL STRUCTURE OF DNA-BOUND CCT/NF-YB/YC COMPLEX (HD1CCT/GHD8/OSNF- YC2)
--RG---- +8txv_G +-1 --RA---- +--------3 +1zla_C ! ! --RG---- +--4 +5x0y_G ! ! --RT---- ! ! +8u14_G +------5 +---------2 --RG---- ! ! +8ox0_C +-6 ! --RA--RA ! ! +------------6a5l_g +-7 ! ----RA-- ! ! +-------------------6g0l_D +---8 ! --RT---- ! ! +---------------------8grq_A --9 ! LCRT---- ! +----------------------8hr1_E ! --RG---- +--------------------------8jla_C |
> 7cby_C:STRUCTURE OF FOXG1 DNA BINDING DOMAIN BOUND TO DBE2 DNA SITE
----------------NAST--RGHT--STLT-------- L +------7cby_C +-----------1 ------ST--------NAST--RTHT--ST---------- L +---2 +------3l2c_A ! ! ----------RGSTRTSTHG--------------RA---- L +-3 +------------------3zpl_B ! ! RT--LA--NTHGTTETYTRG-------------------- L +-4 +----------------------1f4k_B ! ! --TT--------KATTQTTG----LTRT----KA--FTYT L --5 +------------------------2p7c_B ! --------------KT--RGAT--RGNT------------ L +--------------------------8smh_F |
> 7ccr_A:STRUCTURE OF THE 2:2 CGAS-NUCLEOSOME COMPLEX
--RT---- +-----------------------------8grq_A +-7 LCRT---- +-8 +-----------------------------8hr1_E ! ! --RG---- ! +-----------------------------8ox0_C ! --RG---- ! +8txv_G ! +--------------1 --RG---- ! ! +5x0y_G --9 +-------3 --RA---- ! ! ! +1zla_C ! +-4 +-------------2 --RA--RA ! ! ! +6a5l_g ! +--5 ! --RG---- ! ! ! +----------------------8jla_C +--6 ! --RT---- ! +-----------------------8u14_G ! ----RA-- +--------------------------6g0l_D |
> 7cvo_A:CRYSTAL STRUCTURE OF ARABIDOPSIS CO CCT DOMAIN IN COMPLEX WITH NF- YB3/YC4 AND FT CORE2 DNA
--RG--RG +8kcb_A +--------------1 --RG---- +-6 +8jla_C ! ! --RG---- +--7 +--------------8ox0_C ! ! --RG---- ! ! +8txv_G +-----8 +--------------2 --RG---- ! ! +5x0y_G ! ! --RA---- ! ! +1zla_C ! +-----------------3 --RA--RA -10 +6a5l_g ! --RT---- ! +---------8u14_G ! +-------5 ----RA-- ! ! +---------6g0l_D +-----9 LC------ ! +8bvw_e +----------------4 LCRT---- +8hr1_E |
> 7cvo_B:CRYSTAL STRUCTURE OF ARABIDOPSIS CO CCT DOMAIN IN COMPLEX WITH NF- YB3/YC4 AND FT CORE2 DNA
----RA-- +-------------------6g0l_D ! LC------ +----6 +8bvw_e ! ! +--------------1 --RT---- ! +----5 +8grq_A ! ! LCRT---- ! +--------------8hr1_E ! --RA---- +--9 +1zla_C ! ! +---------------------3 --RA--RA ! ! ! +6a5l_g ! ! +-7 --RG---- ! ! ! ! +8txv_G ! ! ! +----------------------2 --RG---- -10 +-8 +8ox0_C ! ! --RT---- ! ! +8u14_G ! +---------------------4 --RG---- ! +8jla_C ! --RG---- +---------------------------5x0y_G |
> 7cvq_F:CRYSTAL STRUCTURE OF ARABIDOPSIS CO CCT DOMAIN IN COMPLEX WITH NF- YB2/YC3 AND FT CORE1 DNA
----RA--RA +-----------------------------6a5l_g ! ----RT---- ! +8u14_G ! +-----------------1 ----RG---- ! ! +8ox0_C ! +--5 ----RA---- +-8 ! ! +----------1zla_C ! ! ! +------3 --LCRT---- ! ! +--6 +----------8hr1_E ! ! ! ! ----RG---- ! ! ! ! +8txv_G ! ! ! ! +--------------2 ----RG---- --9 +-----7 +-----4 +5x0y_G ! ! ! ----RG---- ! ! +--------------8jla_C ! ! ------RA-- ! +-----------------------6g0l_D ! RT-------- +-----------------------------9fgq_D |
> 7d1z_H:CRYO-EM STRUCTURE OF SET8-NUCLEOSOME COMPLEX
----RA-- +-----------------------------6g0l_D ! --RG---- ! +8txv_G ! +--------------1 --RG---- ! ! +8ox0_C ! +-4 --RT---- ! ! ! +8u14_G --9 +----5 +--------------2 --RG---- ! ! ! +5x0y_G ! ! ! --RG---- ! +-6 +--------------8jla_C ! ! ! --RA---- ! ! ! +----------1zla_C ! +---7 +--------3 --RT---- ! ! ! +----------8grq_A +---8 ! LCRT---- ! +---------------------8hr1_E ! --RA--RA +-------------------------6a5l_g |
> 7d3t_D:CRYSTAL STRUCTURE OF OSPHR2 IN COMPLEX WITH DNA
------NCICNARGRG L +-----------------------------4xrm_B +-3 RT----IAQCNAMG-- L ! +-----------------------------1b72_A +-4 RT--QTVAQTNA---- L ! ! +8osb_E ! ! +----------------1 RT----VTKGNA--KA L --5 +------------2 +2lkx_A ! ! RC----IAQCNAYC-- L ! +----------------3rkq_B ! --NG--NA-------- L +-----------------------------2kdz_A |
> 7d69_B:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING GIARDIA HISTONES
--RG---- +8txv_G +--------------1 --RG---- +-------5 +8ox0_C ! ! --RA--RA ! +--------------6a5l_g ! --RA---- +-9 +---------1zla_C ! ! +---------4 ----RA-- ! ! ! +---------6g0l_D ! +--8 LC------ ! ! +8bvw_e ! ! +--------------3 --RT---- -10 +----6 +8grq_A ! ! LCRT---- ! +--------------8hr1_E ! --RT---- ! +8u14_G ! +--------------2 --RG---- +-------7 +5x0y_G ! --RG---- +--------------8jla_C |
> 7d69_D:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING GIARDIA HISTONES
----RA-- +---------------6g0l_D +------5 LC------ ! ! +8bvw_e +-6 +--------------3 LCRT---- ! ! +8hr1_E ! ! --RG---- +-7 +----------------------8jla_C ! ! --RA---- ! ! +1zla_C +----8 +------------------------1 --RG---- ! ! +8ox0_C ! ! --RT---- ! ! +--------------8u14_G --9 +---------4 --RG---- ! ! +8txv_G ! +--------------2 --RA--RA ! +6a5l_g ! --RT---- +-----------------------------8grq_A |
> 7d69_E:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING GIARDIA HISTONES
--RT---- +-----------------------------8grq_A ! LC------ ! +8bvw_e ! +------------------3 LCRT---- ! +--5 +8hr1_E ! ! ! ----RA-- ! +-7 +-------------------6g0l_D -10 ! ! --RG---- ! ! +----------------------8jla_C ! ! --RA---- ! +---8 +1zla_C ! ! ! +--------------2 --RG---- ! ! ! +----4 +8ox0_C ! ! ! ! ! --RA--RA ! ! +---6 +--------------6a5l_g +-9 ! --RT---- ! ! +8u14_G ! +-------------------1 --RG---- ! +5x0y_G ! --RG---- +---------------------------8txv_G |
> 7d69_G:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING GIARDIA HISTONES
----RT---- +8u14_G +--------------1 ----RG---- +----9 +5x0y_G ! ! ----RG---- ! +--------------8jla_C ! ----RG---- +-11 +8txv_G ! ! +--------------2 ----RG---- ! ! ! +8ox0_C ! +----7 ----RT---- ! ! +8smw_G ! ! +-3 ----RA---- -12 +--------------5 +1zla_C ! ! ----RA--RA ! +6a5l_g ! ----RG--RG ! +-----8kcb_A ! +-----------6 ------RA-- ! ! +-----6g0l_D +---10 LC-------- ! +8bvw_e ! +--------------4 ----RT---- +--8 +8grq_A ! --LCRT---- +--------------8hr1_E |
> 7dbh_A:THE MOUSE NUCLEOSOME STRUCTURE CONTAINING H3MM18
LCRT---- +-----------------------------8hr1_E +-4 --RT---- +-5 +-----------------------------8grq_A ! ! --RA--RA +-6 +-----------------------------6a5l_g ! ! --RG---- +-7 +-----------------------------8ox0_C ! ! --RG---- +-8 +-----------------------------5x0y_G ! ! --RG---- ! +-----------------------------8jla_C ! --RA---- --9 +---------1zla_C ! +---------1 ----RA-- ! +--2 +---------6g0l_D ! ! ! --RG---- +------3 +-------------------8txv_G ! --RT---- +----------------------8u14_G |
> 7dvv_A:HEME SENSOR PROTEIN PEFR FROM STREPTOCOCCUS AGALACTIAE BOUND TO OPERATOR DNA (28-MER)
----RGSTRTSTHG--------RA---- L +-----------------------------3zpl_B +-1 --DCLT--AGTTRG----RG--RA---- L +-2 +-----------------------------5h3r_A ! ! TT----KATTQTTG--LTRTKA--FTYT L +-3 +-----------------------------2p7c_B ! ! ----------------YG---------- --4 +-----------------------------3eyi_B ! ----------NCTTNAVTNT-------- L +-----------------------------1pp7_U |
> 7e8d_H:NSD2 E1099K MUTANT BOUND TO NUCLEOSOME
----RA-- +-----------------------------6g0l_D ! RT------ ! +----9fgq_D ! +------------3 --RG---- ! ! +----5x0y_G -10 +------7 --RA---- ! ! ! +1zla_C ! ! ! +--------------2 --RA--RA ! ! +-5 +6a5l_g ! ! ! --RG---- ! ! +---------------8jla_C +----9 --RG---- ! +8txv_G ! +-----------------1 --RG---- ! ! +8ox0_C ! +--6 --RT---- ! ! ! +-----------8u14_G +---8 +-----4 --RT---- ! +-----------8hr1_E ! --RT---- +--------------------8grq_A |
> 7e9c_A:CRYO-EM STRUCTURE OF THE 1:1 ORC1 BAH DOMAIN IN COMPLEX WITH NUCLEOSOME
RG--RT---- +-----------------------------8grq_A +-10 RGLCRT---- ! +-----------------------------8hr1_E ! RG-------- -11 +---------8jh2_e ! +--------5 ------RA-- ! ! +---------6g0l_D ! ! ----RA---- +----------9 +------8rbx_M ! +----------4 ----RG---- ! ! +------8jla_C ! ! ----RG---- +-8 +8txv_G ! +--------------1 ----RG---- ! ! +8ox0_C ! ! ----RT---- +--7 +8u14_G ! +-2 ----RA---- ! +---------3 +1zla_C ! ! ! ----RG---- +----6 +5x0y_G ! ----RA--RA +---------6a5l_g |
> 7e9c_D:CRYO-EM STRUCTURE OF THE 1:1 ORC1 BAH DOMAIN IN COMPLEX WITH NUCLEOSOME
------RA-- +-----------------------------6g0l_D ! RT-------- ! +-----9fgq_D ! +------4 ----RA---- ! ! ! +1zla_C ! +--5 +----3 ----RA--RA ! ! ! +6a5l_g ! ! ! ----RG---- -10 +---6 +------------8jla_C ! ! ! ----RT---- ! ! ! +8u14_G ! +-7 +---------------1 ----RG---- ! ! ! +8ox0_C ! +--8 ! --LCRT---- ! ! ! +-------------------8hr1_E ! ! ! ----RT---- +----9 +---------------------8grq_A ! ----RG---- ! +8txv_G +------------------------2 ----RG---- +5x0y_G |
> 7e9c_G:CRYO-EM STRUCTURE OF THE 1:1 ORC1 BAH DOMAIN IN COMPLEX WITH NUCLEOSOME
--RG---- +---------------------------8ox0_C ! --RG---- ! +8txv_G ! +-1 --RA---- ! +---------4 +1zla_C ! ! ! --RA--RA -11 +--6 +6a5l_g ! ! ! --RT---- ! ! ! +8u14_G ! +----------7 +---------2 --RG---- ! ! ! +5x0y_G ! ! ! --RG---- ! ! +------------8jla_C +--10 --RC---- ! +---6qld_f ! +------------5 ----RA-- ! ! +---6g0l_D +------9 --RA---- ! +7xsx_a ! +--------------3 --RT---- +-8 +8grq_A ! LCRT---- +--------------8hr1_E |
> 7ea5_E:YEAST SET2 BOUND TO A NUCLEOSOME CONTAINING ONCOHISTONE MUTATIONS
RG--RT---- +-----------------------------8grq_A ! RG-------- ! +8jh2_e ! +------------------3 RGLCRT---- ! +--5 +8hr1_E +-9 ! ! ------RA-- ! ! +--7 +-------------------6g0l_D ! ! ! ! ----RG---- ! ! ! +----------------------8jla_C ! ! ! ----RA---- ! +---8 +1zla_C ! ! +-------------2 ----RA--RA -10 ! ! +6a5l_g ! ! +-------4 ----RT---- ! ! ! ! +8u14_G ! +--6 +--------------1 ----RG---- ! ! +8ox0_C ! ! ----RG---- ! +----------------------5x0y_G ! ----RG---- +-----------------------------8txv_G |
> 7ea5_H:YEAST SET2 BOUND TO A NUCLEOSOME CONTAINING ONCOHISTONE MUTATIONS
----RA-- +-----------------------------6g0l_D ! --RA---- ! +1zla_C ! +-------------2 --RA--RA ! ! +6a5l_g ! +--------5 --RT---- --9 ! ! +8u14_G ! ! ! +--------------1 --RG---- ! +-7 +-4 +8ox0_C ! ! ! ! --RG---- ! ! ! +--------------5x0y_G ! ! ! --RG---- +---8 +-----------------------8jla_C ! --RG---- ! +-----------8txv_G ! +--------3 --RT---- +----6 +-----------8grq_A ! LCRT---- +--------------------8hr1_E |
> 7ea8_A:HUMAN SETD2 BOUND TO A NUCLEOSOME CONTAINING ONCOHISTONE MUTATIONS
--RG--------RG------ +-----------------------------6iy2_A ! --RT--RG------------ ! +6pww_K ! +------------------------1 --RG--------RT------ ! ! +8grq_A ! ! --RG--------RT------ ! ! +--------------7zs9_e ! +-16 +------10 --RT----LA--RG------ ! ! ! ! ! +7unc_a ! ! ! ! +-------------2 --RG----LC--RT------ ! ! ! ! +8hr1_E ! ! +-15 HGRGYG--QC--RG------ ! ! ! +-------------------7y7i_E ! ! ! ! --RCYA------RG------ +-19 ! ! ! +--------7ccr_A ! ! ! +-14 +---------8 ------------RG------ ! ! ! ! ! +--------8ox0_C ! ! ! ! ! --------LT---------- ! ! ! +-13 +-----7ywx_E ! ! ! ! +------------6 --------------RA---- ! ! ! ! ! +-----6g0l_D ! ! +-17 ! ! --------EA----RG---- ! ! ! ! +-12 +---------7n8n_A ! ! ! ! ! +----9 ------------RG------ ! ! ! ! ! ! +---------5x0y_G ! ! ! ! ! ! ------------RC------ ! ! ! ! +--11 +7xyf_B +-20 ! ! ! ! +-4 ----------------KG-- ! ! ! ! ! ! +----5 +7nkx_f ! ! +-18 ! ! ! ! ------------RG------ ! ! ! ! +-------7 +-8jla_C ! ! ! ! ! ------------RA------ ! ! ! ! ! +1zla_C ! ! ! ! +-----3 ------------RA----RA +-21 ! ! ! +6a5l_g ! ! ! ! ! ------------RT------ ! ! ! ! +---------------------------7kbd_C ! ! ! ! ----------IT-------- ! ! ! +----------------------------3wkj_D -22 ! ! --RG---------------- ! ! +-----------------------------5z3u_A ! ! HARA----LT--RC------ ! +-----------------------------3kwq_E ! HARAYT--LT--RC------ +-----------------------------4xzq_E |
> 7eg6_A:SNF5 FINGER HELIX BOUND TO THE NUCLEOSOME
RG--RT---- +-----------------------------8grq_A ! RG-------- ! +8jh2_e ! +------------------3 RGLCRT---- ! +---6 +8hr1_E ! ! ! ------RA-- -10 ! +-------------------6g0l_D ! ! ----RA---- ! +-8 +1zla_C ! ! ! +--------------2 ----RG---- ! ! ! +----5 +8ox0_C ! ! ! ! ! ----RA--RA ! ! +---7 +--------------6a5l_g +---9 ! ----RG---- ! +-------------------8jla_C ! ----RT---- ! +8u14_G ! +--------------1 ----RG---- +----------4 +5x0y_G ! ----RG---- +--------------8txv_G |
> 7egp_S:THE STRUCTURE OF SWI/SNF-NUCLEOSOME COMPLEX
LC------ +8bvw_e +--------------1 --RT---- ! +8grq_A +---10 LARG---- ! ! +7unc_a +-12 +--------------3 LCRT---- ! ! +8hr1_E ! ! --RG---- ! +-------------------8txv_G ! --RA---- ! +-7xsx_a ! +-----6 ----RA-- ! ! +-6g0l_D ! +--7 --RC---- -13 ! ! +6qld_f ! ! +------5 --RT---- ! ! ! +8u14_G ! +-8 +-2 --RG---- ! ! ! +8ox0_C ! ! ! --RA---- ! +-9 ! +1zla_C ! ! ! +----------4 --RA--RA ! ! ! +6a5l_g +----11 ! --RG---- ! +------------5x0y_G ! --RG---- +--------------8jla_C |
> 7el3_B:CRYSTAL STRUCTURE OF HPAR-DNA COMPLEX FROM ACINETOBACTER BAUMANNII
VT--HTPTSA--TTKG----YT L +-----------------------------9c4c_G +-1 --ET--RGTCTGSTRG--KT-- L +-2 +-----------------------------6q2b_B ! ! ------RGTCTA--RGNTRT-- L --3 +-----------------------------4fx4_B ! ----ITRGECSCSGKG------ L +-----------------------------5i2d_R |
> 7jps_D:ORC-DNA: HUMAN ORIGIN RECOGNITION COMPLEX (ORC) WITH DNA BOUND IN THE CORE
RT--LANTHGTTETYTRG---------------- L +-----------------------------1f4k_B +-2 --TT------KATTQTTG--LTRT----KAFTYT L ! +-----------------------------2p7c_B +-3 --------------NASTRGHT--STLT------ L ! ! +------7cby_C --4 +----------------------1 --------------NASTRTHT--ST-------- L ! +------3l2c_A ! --------------------YG------------ +-----------------------------3eyi_B |
> 7jzv_N:CRYO-EM STRUCTURE OF THE BRCA1-UBCH5C/BARD1 E3-E2 MODULE BOUND TO A NUCLEOSOME
----RG---- +-----------------------------5x0y_G ! ----RT---- ! +8u14_G ! +--------------1 ----RG---- ! +---11 +8ox0_C ! ! ! ----RA--RA ! ! +--------------6a5l_g -15 +-13 ----RT---- ! ! ! +8smw_G ! ! ! +-------2 ----RA---- ! ! ! ! +1zla_C ! ! +----------10 ----RG---- ! ! ! +8txv_G ! ! +-------5 ----RG---- +-----14 +8jla_C ! ----RG--RG ! +-------8kcb_A ! +-------9 --LARG---- ! ! ! +7unc_a ! ! +------6 LC--RT---- ! ! +8hr1_E +-----12 ----RC---- ! +---6qld_f ! +---7 ------RA-- ! ! +---6g0l_D +-------8 ----RA---- ! +7xsx_a ! +-3 LC-------- +-------4 +8bvw_e ! ----RT---- +8grq_A |
> 7k5x_H:CRYO-EM STRUCTURE OF A CHROMATOSOME CONTAINING HUMAN LINKER HISTONE H1.0
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------3 ----RG---- ! ! +----5x0y_G ! +-5 ----RA---- ! ! ! +1zla_C ! +--6 +----------------2 ----RG---- -10 ! ! +8jla_C ! ! ! --LCRT---- ! +-7 +-------------------8hr1_E ! ! ! ----RT---- ! ! ! +8u14_G ! +-8 +----------------------1 ----RG---- ! ! ! +8ox0_C ! ! ! ----RG---- +--9 ! +-----------8txv_G ! +------------4 ----RT---- ! +-----------8grq_A ! ----RA--RA +--------------------------6a5l_g |
> 7k60_H:CRYO-EM STRUCTURE OF A CHROMATOSOME CONTAINING HUMAN LINKER HISTONE H1.10
------RA-- +-----------------------------6g0l_D ! RT-------- ! +-----9fgq_D ! +-----3 ----RA---- ! ! ! +1zla_C ! +------5 +-----2 ----RG---- -10 ! ! +8ox0_C ! ! ! ----RA--RA ! ! +-----------6a5l_g ! +----7 ----RG---- ! ! ! +8txv_G ! ! ! +--------------1 ----RG---- ! ! +---6 +5x0y_G +-----9 ! ----RG---- ! +--------------8jla_C ! ----RT---- ! +-----------8u14_G ! +--------4 --LCRT---- +--8 +-----------8hr1_E ! ----RT---- +--------------------8grq_A |
> 7k63_H:CRYO-EM STRUCTURE OF A CHROMATOSOME CONTAINING CHIMERIC LINKER HISTONE GH1.10-NCH1.4
------RA-- +-----------------------------6g0l_D ! RT-------- ! +-----9fgq_D ! +-----3 ----RA---- ! ! ! +1zla_C ! +------5 +-----2 ----RG---- -10 ! ! +8ox0_C ! ! ! ----RA--RA ! ! +-----------6a5l_g ! +----7 ----RT---- ! ! ! +8u14_G ! ! ! +---------------1 ----RG---- ! ! +--6 +5x0y_G +-----9 ! ----RG---- ! +---------------8jla_C ! ----RG---- ! +-----------8txv_G ! +--------4 ----RT---- +--8 +-----------8grq_A ! --LCRT---- +--------------------8hr1_E |
> 7k6p_A:ACTIVE STATE DOT1 BOUND TO THE UNACETYLATED H4 NUCLEOSOME
RG-------- +8jh2_e +--------------2 RG--RT---- +-------4 +8grq_A ! ! RGLCRT---- +-6 +---------------8hr1_E ! ! ------RA-- +-7 +-----------------------6g0l_D ! ! ----RG---- +-8 +-------------------------5x0y_G ! ! ----RG---- +-9 +-------------------------8ox0_C ! ! ----RA--RA ! +--------------------------6a5l_g ! ----RG---- -10 +8txv_G ! +-1 ----RA---- ! +-------------------3 +1zla_C ! ! ! ----RG---- +-------5 +8jla_C ! ----RT---- +--------------------8u14_G |
> 7k6p_D:ACTIVE STATE DOT1 BOUND TO THE UNACETYLATED H4 NUCLEOSOME
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------2 ----RG---- ! ! +----5x0y_G ! +-6 ----RA---- -10 ! ! +1zla_C ! ! ! +--------------1 ----RG---- ! +-------7 +--5 +8ox0_C ! ! ! ! ----RA--RA ! ! ! +--------------6a5l_g ! ! ! ----RG---- +--9 +------------------8jla_C ! ----RT---- ! +-----------8u14_G ! +--------3 --LCRT---- ! ! +-----------8hr1_E +-----8 ----RG---- ! +-----------8txv_G +--------4 ----RT---- +-----------8grq_A |
> 7k78_E:ANTIBODY AND NUCLEOSOME COMPLEX
--RT---- +-----------------------------8grq_A +-4 LCRT---- +-5 +-----------------------------8hr1_E ! ! ----RA-- +-6 +-----------------------------6g0l_D ! ! --RG---- +-7 +-----------------------------8ox0_C ! ! --RG---- ! +-----------------------------5x0y_G ! --RG---- +-8 +8txv_G ! ! +--------------1 --RA---- ! ! +----2 +1zla_C ! ! ! ! --RG---- --9 +---------3 +--------------8jla_C ! ! --RA--RA ! +-------------------6a5l_g ! --RT---- +-----------------------------8u14_G |
> 7kbd_C:NUCLEOSOME IN INTERPHASE CHROMOSOME FORMED IN XENOPUS EGG EXTRACT (OLIGO FRACTION)
RT---- +8smw_G +--------------1 RG---- ! +8ox0_C +-6 RG---- ! ! +8txv_G +--7 +--------------2 RG---- ! ! +5x0y_G +------8 ! RG---- ! ! +--------------8jla_C ! ! RA--RA ! +-----------------6a5l_g ! RA---- -11 +----------1zla_C ! +-------4 RT---- ! ! +----------8hr1_E ! +-9 RG--RG ! ! ! +-----8kcb_A ! ! +------------3 --RA-- +---10 +-----6g0l_D ! RT---- ! +-----------8u14_G +-------5 RT---- +-----------8grq_A |
> 7ktq_D:NUCLEOSOME FROM A DIMERIC PRC2 BOUND TO A NUCLEOSOME
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------2 ----RG---- ! +---6 +----5x0y_G -10 ! ! ----RG---- ! +---7 +-----------------8jla_C ! ! ! ----RA--RA ! ! +---------------------6a5l_g ! ! ----RA---- ! ! +----------1zla_C +---9 +------3 ----RT---- ! ! +----------8grq_A ! +----5 ----RT---- ! ! ! +8u14_G ! ! +-----------------1 ----RG---- +--8 +8ox0_C ! ----RG---- ! +-----------8txv_G +----------4 --LCRT---- +-----------8hr1_E |
> 7ktq_E:NUCLEOSOME FROM A DIMERIC PRC2 BOUND TO A NUCLEOSOME
RG--RT---- +-----------------------------8grq_A ! RG-------- ! +8jh2_e ! +---------------------4 RGLCRT---- -11 ! +8hr1_E ! ! ----RA---- ! ! +--7xsx_a ! ! +-------5 ------RA-- ! ! ! +--6g0l_D +-----10 +-----6 ----RA---- ! ! ! +1zla_C ! ! +----------2 ----RG---- ! +--8 +8ox0_C ! ! ! ----RG---- ! ! ! +8txv_G ! ! ! +--------------1 ----RG---- +--9 +-7 +5x0y_G ! ! ----RG---- ! +--------------8jla_C ! ----RT---- ! +8u14_G +------------------3 ----RA--RA +6a5l_g |
> 7lbx_A:CRYSTAL STRUCTURE OF TFAM (MITOCHONDRIAL TRANSCRIPTION FACTOR A) IN COMPLEX WITH LSP
--STYGLCSGLAKTTGTCIGMGKGRTYANTVTFGPGQCLC L +---------------7lbx_A +------1 RCNTFTMA--RAHGNAACST-------------------- L +--2 +---------------4euw_A ! ! RTNTFTMA--RT--NG--SA-------------------- L +-3 +----------------------4y60_C ! ! KCNT--MAMA--EGSAACNT-------------------- L +-4 +-------------------------2lef_A ! ! ------FTCA----IG--AT-------------------- +-5 +--------------------------6oem_H ! ! RGNTFTMA--RT--NGRTSA-------------------- L --6 +---------------------------7m5w_A ! ----YA--------FT--SG-------------------- +---------------------------5ze0_N |
> 7lv8_C:STRUCTURE OF THE MARSEILLEVIRUS NUCLEOSOME
--RT---- +8u14_G +--------------1 --RG---- ! +5x0y_G +-6 --RT---- ! ! +8smw_G +-7 +--------------2 --RG---- ! ! +8ox0_C ! ! --RA--RA ! +---------------6a5l_g +-8 --RG---- ! ! +8txv_G ! ! +-----------3 --RA---- +----9 +-----5 +1zla_C ! ! ! --RT---- ! ! +-----------8grq_A ! ! --RG---- -11 +------------------8jla_C ! --RG--RG ! +------8kcb_A ! +------------4 ----RA-- +--10 +------6g0l_D ! LCRT---- +-------------------8hr1_E |
> 7lv8_D:STRUCTURE OF THE MARSEILLEVIRUS NUCLEOSOME
--RA-- +-----------------------------6g0l_D +-8 RG---- ! +-----------------------------5x0y_G ! RA---- ! +1zla_C ! +--------------1 RG---- --9 +----4 +8ox0_C ! ! ! RA--RA ! +-------5 +--------------6a5l_g ! ! ! RG---- ! ! +-------------------8jla_C +-7 RG---- ! +-----------8txv_G ! +--------2 RT---- ! ! +-----------8grq_A +------6 RT---- ! +-----------8u14_G +--------3 RT---- +-----------8hr1_E |
> 7lv9_A:MARSEILLEVIRUS HETEROTRIMERIC (HEXAMERIC) NUCLEOSOME
LCRT---- +-----------------------------8hr1_E ! LARG---- ! +7unc_a ! +-------------------1 --RT---- ! +-11 +8grq_A ! ! ! --RA--RA -13 ! +-------------------6a5l_g ! ! LC------ ! ! +-------8bvw_e ! ! +-----7 --RA---- ! ! ! ! +--7xsx_a ! ! ! +----6 ----RA-- +------12 ! +--6g0l_D ! ! --RC---- ! +--9 +6qld_f ! ! ! ! --RT---- ! ! ! +------5 +8u14_G ! ! ! ! ! +-2 --RA---- ! ! ! ! +-3 +1zla_C +---10 +-----8 ! --RG---- ! ! +8ox0_C ! ! --RG---- ! +-------5x0y_G ! --RG---- ! +8txv_G +----------------4 --RG---- +8jla_C |
> 7lv9_B:MARSEILLEVIRUS HETEROTRIMERIC (HEXAMERIC) NUCLEOSOME
----RA-- +-----------------------------6g0l_D +-6 --RA--RA +-7 +-----------------------------6a5l_g ! ! --RG---- ! +-----------------------------8ox0_C ! --RT---- ! +8u14_G ! +--------------1 --RG---- +-8 ! +5x0y_G ! ! +-----3 --RA---- ! ! ! ! +1zla_C ! ! +----4 +-------------2 --RG---- ! ! ! ! +8jla_C --9 +---5 ! LCRT---- ! ! +--------------------8hr1_E ! ! --RT---- ! +-------------------------8grq_A ! --RG---- +-----------------------------8txv_G |
> 7lya_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE WITH LINKED HISTONE PROTEINS H2A AND H2B
--RT---- +8u14_G +--------------1 --RG---- ! +5x0y_G +-6 --RT---- ! ! +8smw_G +-7 +--------------2 --RG---- ! ! +8ox0_C ! ! --RA--RA ! +---------------6a5l_g +-8 --RG---- ! ! +8txv_G ! ! +-----------3 --RA---- +----9 +-----5 +1zla_C ! ! ! --RT---- ! ! +-----------8grq_A ! ! --RG---- -11 +------------------8jla_C ! --RG--RG ! +------8kcb_A ! +------------4 ----RA-- +--10 +------6g0l_D ! LCRT---- +-------------------8hr1_E |
> 7lyb_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE IN COMPLEX WITH BRCA1-BARD1-UBCH5C
--RT---- +8u14_G +--------------1 --RG---- ! +8ox0_C +-12 --RG---- ! ! +8txv_G ! +--------------2 --RG---- ! +5x0y_G +-------13 --RT---- ! ! +8smw_G ! ! +-3 --RA---- ! ! +---------6 +1zla_C ! ! ! ! --RA--RA ! +---11 +6a5l_g ! ! --RG---- -15 +---------8jla_C ! --RG--RG ! +------8kcb_A ! +------10 LARG---- ! ! ! +7unc_a ! ! +------7 LCRT---- ! ! +8hr1_E +-------14 --RC---- ! +---6qld_f ! +--8 ----RA-- ! ! +---6g0l_D +-------9 --RA---- ! +7xsx_a ! +-4 LC------ +------5 +8bvw_e ! --RT---- +8grq_A |
> 7lyc_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE UBIQUITYLATED AT HISTONE H2A LYS13 AND LYS15 IN COMPLEX WITH BARD1 (RESIDUES 415- 777)
--RT---- +8smw_G +--------------1 --RG---- ! +5x0y_G +-6 --RT---- ! ! +8u14_G +-7 +--------------2 --RG---- ! ! +8ox0_C ! ! --RA--RA ! +---------------6a5l_g +-8 --RG---- ! ! +8txv_G ! ! +-----------3 --RA---- +----9 +-----5 +1zla_C ! ! ! --RT---- ! ! +-----------8grq_A ! ! --RG---- -11 +------------------8jla_C ! --RG--RG ! +------8kcb_A ! +------------4 ----RA-- +--10 +------6g0l_D ! LCRT---- +-------------------8hr1_E |
> 7m1x_C:CRYO-EM STRUCTURE OF NUCLEOSOME CONTAINING MOUSE HISTONE VARIANT H2A.Z
--RG---- +8txv_G +-1 --RA---- +---------3 +1zla_C ! ! --RG---- +----5 +5x0y_G ! ! --RA--RA +-----7 +---------6a5l_g ! ! --RG---- +--10 +--------------8jla_C ! ! --RT---- ! ! +8smw_G ! +--------------------2 --RG---- ! +8ox0_C -11 --RT---- ! +-----------8u14_G ! +-------6 LCRT---- ! ! +-----------8hr1_E +----9 --RG--RG ! +-----8kcb_A ! +------------4 ----RA-- +-8 +-----6g0l_D ! --RT---- +------------------8grq_A |
> 7mcs_F:CRYO-ELECTRON MICROSCOPY STRUCTURE OF TNSC(1-503)A225V BOUND TO DNA
----RC-------------- +---------------7mcs_F +----------1 --------RT---------- +-2 +---------------7jk2_A ! ! --TT--RA------------ +-3 +--------------------------7jps_B ! ! FT----------YT------ --4 +---------------------------6qem_L ! ----------MT--RTRTIT L +----------------------------7jy6_F |
> 7n8n_A:MELBOURNEVIRUS NUCLEOSOME LIKE PARTICLE
--------LCRT +-----------------------------8hr1_E +-7 ------RG--RT +-8 +-----------------------------8grq_A ! ! RA--RA------ ! +-----------------------------6a5l_g ! RA---------- ! +1zla_C --9 +--------------2 RG---------- ! +---------4 +5x0y_G ! ! ! RG---------- ! ! +---------------8jla_C +---6 RG---------- ! +8txv_G ! +-----------------1 RG---------- ! ! +8ox0_C +-------5 RT---------- ! +---------8u14_G +-------3 --RA-------- +---------6g0l_D |
> 7n8n_B:MELBOURNEVIRUS NUCLEOSOME LIKE PARTICLE
----RA-- +1zla_C +--------------1 ----RG-- +----3 +8ox0_C ! ! ----RARA +--5 +--------------6a5l_g ! ! ----RG-- +--6 +-------------------5x0y_G ! ! ----RG-- +--9 +----------------------8jla_C ! ! --RA---- ! +-------------------------6g0l_D ! RT------ ! +-------------------9fgq_D ! +---4 ----RGRG -11 ! ! +-------8kcb_A ! +-7 +-----------2 ----RT-- ! ! ! +-------8hr1_E ! +-8 ! ----RT-- ! ! ! +-----------------------8smw_G +-10 ! ----RT-- ! +-------------------------8u14_G ! ----RG-- +--------------------------8txv_G |
> 7nkx_a:RNA POLYMERASE II-SPT4/5-NUCLEOSOME-CHD1 STRUCTURE
--RT---- +-----------------------------8grq_A ! LARG---- ! +7unc_a ! +--------------4 LCRT---- ! ! +8hr1_E ! ! --RA---- ! ! +7xsx_a ! ! +-----1 LC------ ! +-10 +----6 +8bvw_e -13 ! ! ! ! ----RA-- ! ! ! +---8 +-----6g0l_D ! ! ! ! ! --RA---- ! ! ! ! ! +1zla_C ! +-11 +-9 +----------2 --RG---- ! ! ! ! +8ox0_C ! ! ! ! --RA--RA ! ! ! +--------------6a5l_g ! ! ! --RG---- +---------12 +-----------------5x0y_G ! --RC---- ! +6qld_f ! +-------5 --RT---- ! ! +8u14_G +---------7 --RG---- ! +8txv_G +--------3 --RG---- +8jla_C |
> 7nkx_f:RNA POLYMERASE II-SPT4/5-NUCLEOSOME-CHD1 STRUCTURE
--RC---- +6qld_f +---------8 --RT---- ! ! +8u14_G ! +-2 --RG---- +-----10 +8ox0_C ! ! --RG---- ! ! +8txv_G +-12 +----------5 --RA--RA ! ! +6a5l_g ! ! --RT---- ! ! +8smw_G +-13 +-----------------1 --RG---- ! ! +5x0y_G ! ! --RA---- ! ! +1zla_C ! +------------------7 --RG---- ! +8jla_C ! --RA---- -15 +8rbx_M ! +-3 LARG---- ! +---------------4 +7unc_a ! ! ! --RT---- ! +--11 +8grq_A ! ! ! --RA---- ! ! ! +7xsx_a +-14 +--------------6 LCRT---- ! +8hr1_E ! ----RA-- ! +6g0l_D +------------------9 LC------ +8bvw_e |
> 7om3_A:CRYSTAL STRUCTURE OF KOD DNA POLYMERASE IN A BINARY COMPLEX WITH HYPOXANTHINE CONTAINING TEMPLATE
------IT------------------------------------QGQAVT--FTITSAQTIGNGSGYGFT--VAKTLTKARGRCNC L +------------3iay_A +----------1 --------------------------------DG--FA----FG----------------------------WC----KT------ ! +------------2dtu_A --3 PIPIVIIIPGFIKGRINTNTFCQGMGDARAYT--RG--WGDG--------WG---------------------------------- L ! +---------------------2xhb_A +-2 --------------------------RT----------------RC--------------LC--SCYG--FAYA----KA--RG-- L +---------------------8g9l_A |
> 7on1_c:CENP-A NUCLEOSOME IN COMPLEX WITH CENP-C
--RA--RA +-----------------------------6a5l_g ! --RT---- ! +8u14_G ! +--------------------1 --RG---- ! ! +8ox0_C ! ! --RT---- -15 +-13 +8smw_G ! ! ! +-2 --RA---- ! ! ! +--------6 +1zla_C ! ! ! ! ! --RG---- ! ! +---------10 +8jla_C ! ! ! --RG---- ! ! ! +8txv_G +-----14 +---------3 --RG---- ! +5x0y_G ! --RG--RG ! +----------------8kcb_A ! ! --RC---- ! ! +---6qld_f ! ! +-----8 ----RA-- +----12 ! +---6g0l_D ! +---9 LC------ ! ! ! +8bvw_e ! ! +--------7 --RT---- +-11 +8hr1_E ! --RA---- ! +7xsx_a ! +-4 LARG---- +-------------5 +7unc_a ! --RT---- +8grq_A |
> 7on1_e:CENP-A NUCLEOSOME IN COMPLEX WITH CENP-C
LC------ +8bvw_e +--------------1 --RT---- ! +8grq_A +-----9 LARG---- ! ! +7unc_a ! +-------------4 LCRT---- ! +8hr1_E ! --RA---- ! +--7xsx_a ! +------6 ----RA-- ! ! +--6g0l_D ! +-----7 --RC---- -13 ! ! +6qld_f ! ! +--------5 --RT---- ! ! +8u14_G ! ! --RG---- ! +-11 +8txv_G ! ! ! +-2 --RA---- ! ! ! +----------3 +1zla_C ! ! ! ! ! --RG---- ! ! ! +---8 +8ox0_C +-12 ! ! ! --RG---- ! +-10 +----------5x0y_G ! ! --RA--RA ! +--------------6a5l_g ! --RG---- +-----------------8jla_C |
> 7otq_E:CRYO-EM STRUCTURE OF ALC1/CHD1L BOUND TO A PARYLATED NUCLEOSOME
RG-------- +8jh2_e +---------------1 RG--RT---- +------3 +8grq_A ! ! RGLCRT---- +-5 +---------------8hr1_E ! ! ------RA-- +-6 +----------------------6g0l_D ! ! ----RG---- ! +------------------------8ox0_C +-7 ----RA---- ! ! +1zla_C ! ! +--------------2 ----RG---- +-8 +---------4 +5x0y_G ! ! ! ----RG---- ! ! +---------------8jla_C +-9 ! ----RA--RA ! ! +---------------------------6a5l_g -10 ! ----RG---- ! +-----------------------------8txv_G ! ----RT---- +-----------------------------8u14_G |
> 7pet_H:THE 4X177 NUCLEOSOME ARRAY CONTAINING H1
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------2 ----RG---- ! ! +----5x0y_G ! +-----5 ----RA---- ! ! ! +1zla_C -11 +-8 +----------------1 ----RG---- ! ! ! +8jla_C ! +-9 ! ----RG---- ! ! ! +-----------------------8ox0_C ! ! ! ----RA--RA ! ! +------------------------6a5l_g ! ! ----RG---- +-10 +-----------8txv_G ! +--------4 ----RT---- ! ! +-----------8grq_A ! +-6 ----RT---- ! ! ! +----------8smw_G +-----7 +---------3 --LCRT---- ! +----------8hr1_E ! ----RT---- +--------------------8u14_G |
> 7psx_B:STRUCTURE OF HOXB13 BOUND TO HYDROXYMETHYLATED DNA
RT--VTKGNA------KA-- L +-----------------------------2lkx_A ! RTQTVAQTNA---------- L ! +8osb_E ! +--------------1 RT--IAQCNA----MG---- L +-5 +----2 +1b72_A ! ! ! ! ----NCICNARGRG------ L ! ! +--3 +---------------4xrm_B ! ! ! ! RC--IAQCNA----YC---- L --6 +-----4 +--------------------3rkq_B ! ! ----VTCCNA----QA--RT L ! +-----------------------8g87_X ! --------------YCFAKC L +-----------------------------6pe2_B |
> 7q3o_C:STRUCTURE OF CDX1 BOUND TO HYDROXYMETHYLATED DNA
RT--VTKGNA--KA-- L +-----------------------------2lkx_A ! RTQTVAQTNA------ L ! +8osb_E ! +--------------1 RT--IAQCNAMG---- L +-5 +----2 +1b72_A ! ! ! ! ----NCICRG------ L ! ! +--3 +---------------4xrm_B ! ! ! ! RC--IAQCNAYC---- L --6 +-----4 +--------------------3rkq_B ! ! ----VTCCNAQA--RT L ! +-----------------------8g87_X ! ----------YCFAKC L +-----------------------------6pe2_B |
> 7r5s_T:STRUCTURE OF THE HUMAN CCAN BOUND TO ALPHA SATELLITE DNA
----RA-- +-----------------------------6g0l_D +-5 --RG---- +-6 +-----------------------------8jla_C ! ! --RG---- +-7 +-----------------------------5x0y_G ! ! --RG---- +-8 +-----------------------------8ox0_C ! ! --RA--RA ! +-----------------------------6a5l_g ! --RA---- --9 +----------1zla_C ! +---------1 LCRT---- ! ! +----------8hr1_E ! +-3 --RG---- ! ! ! +-----------8txv_G +--------4 +--------2 --RT---- ! +-----------8grq_A ! --RT---- +--------------------8u14_G |
> 7r5s_W:STRUCTURE OF THE HUMAN CCAN BOUND TO ALPHA SATELLITE DNA
--LCRT---- +-----------------------------8hr1_E +-7 ----RT---- +-8 +-----------------------------8grq_A ! ! ----RA--RA +-9 +-----------------------------6a5l_g ! ! ----RG---- ! +-----------------------------5x0y_G ! ----RA---- ! +--------------1zla_C -10 +----4 ----RT---- ! ! ! +8u14_G ! ! +--------------1 ----RG---- ! +---5 +8ox0_C ! ! ! ----RG---- ! ! ! +8txv_G +-----6 +-------------------3 ----RG---- ! +8jla_C ! RT-------- ! +9fgq_D +-----------------------2 ------RA-- +6g0l_D |
> 7scy_H:NUC147 BOUND TO SINGLE BRCT
----RA-- +-----------------------------6g0l_D ! --RA---- ! +1zla_C ! +-------------2 --RA--RA ! ! +6a5l_g ! +--5 --RT---- --9 ! ! +8u14_G ! ! ! +--------------1 --RG---- ! +-------6 +-4 +8ox0_C ! ! ! ! --RG---- ! ! ! +--------------5x0y_G ! ! ! --RG---- +---8 +-----------------8jla_C ! --RG---- ! +-----------8txv_G ! +--------3 --RT---- +----7 +-----------8grq_A ! LCRT---- +--------------------8hr1_E |
> 7tdw_A:STRUCTURE OF FOXP3-DNA COMPLEX
--------NASTRGHT--STLT-------- L +------7cby_C +-----------1 --ST----NASTRTHT--ST---------- L +---2 +------3l2c_A ! ! ------RTSTHG------------RA---- L +------3 +------------------3zpl_B ! ! TT--KATTQTTG--LTRT----KA--FTYT L --4 +----------------------2p7c_B ! --------------YG-------------- +-----------------------------3eyi_B |
> 7tdx_A:STRUCTURE OF FOXP3-DNA COMPLEX
----------NAST--RGHT--STLT------ L +------7cby_C +-----------1 --ST------NAST--RTHT--ST-------- L +---2 +------3l2c_A ! ! ----RGSTRTSTHG------------------ L +--3 +------------------3zpl_B ! ! TT----KATTQTTG----LTRT----KAFTYT L +---4 +----------------------2p7c_B ! ! --------KT--RGAT--RGNT---------- L --5 +-------------------------8smh_F ! ------------------YG------------ +-----------------------------3eyi_B |
> 7tn2_D:COMPOSITE MODEL OF A CHD1-NUCLEOSOME COMPLEX IN THE NUCLEOTIDE-FREE STATE DERIVED FROM 2.3A AND 2.7A CRYO-EM MAPS
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------4 ----RG---- ! ! +----5x0y_G ! +-5 ----RA---- -10 ! ! +1zla_C ! +--6 +----------------3 ----RA--RA ! ! ! +6a5l_g ! ! ! ----RT---- ! ! +-------------------8grq_A ! ! ----RT---- +------9 +8u14_G ! +--------------------1 ----RG---- ! +-7 +8ox0_C ! ! ! --LCRT---- +-8 +--------------------8hr1_E ! ----RG---- ! +8txv_G +---------------------2 ----RG---- +8jla_C |
> 7unc_a:POL II-DSIF-SPT6-PAF1C-TFIIS COMPLEX WITH REWRAPPED NUCLEOSOME
RG-------- +8jh2_e +---------------2 RG--RT---- +--------6 +8grq_A ! ! RGLCRT---- ! +---------------8hr1_E ! ----RA---- ! +--7xsx_a ! +-------4 ------RA-- +-10 ! +--6g0l_D ! ! +----5 ----RA---- ! ! ! ! +1zla_C ! ! +----8 +----------3 ----RG---- ! ! ! ! +8ox0_C ! ! ! ! ----RA--RA ! ! ! +---------------6a5l_g +-11 +---9 ----RT---- ! ! ! +8u14_G ! ! ! +---------------1 ----RG---- ! ! +----7 +5x0y_G -12 ! ! ----RG---- ! ! +---------------8jla_C ! ! ----RG---- ! +---------------------------8txv_G ! ----RG---- +-----------------------------7e9c_G |
> 7und_e:POL II-DSIF-SPT6-PAF1C-TFIIS-NUCLEOSOME COMPLEX (STALLED AT +38)
RG--RT---- +-----------------------------8grq_A ! RG-------- ! +8jh2_e ! +------------------3 RGLCRT---- -10 +----6 +8hr1_E ! ! ! ------RA-- ! ! +-------------------6g0l_D ! ! ----RT---- ! ! +8u14_G +----9 +--------------1 ----RG---- ! +----4 +5x0y_G ! ! ! ----RG---- ! +----7 +--------------8ox0_C ! ! ! ----RG---- +-8 +-------------------8jla_C ! ----RA---- ! +--------------1zla_C +---------5 ----RG---- ! +8txv_G +--------------2 ----RA--RA +6a5l_g |
> 7uv9_E:KDM2A-NUCLEOSOME STRUCTURE STABILIZED BY H3K36C-UNC8015 COVALENT CONJUGATE
--RT---- +-----------------------------8grq_A +-6 LCRT---- +-7 +-----------------------------8hr1_E ! ! ----RA-- +-8 +-----------------------------6g0l_D ! ! --RG---- ! +-----------------------------5x0y_G ! --RT---- ! +8u14_G --9 +--------------1 --RG---- ! +----3 +8ox0_C ! ! ! --RA--RA ! +-----4 +--------------6a5l_g ! ! ! --RG---- +---5 +-------------------8jla_C ! --RG---- ! +8txv_G +-------------------------2 --RA---- +1zla_C |
> 7ux9_A:ARABIDOPSIS DDM1 BOUND TO NUCLEOSOME (H2A.W, H2B, H3.3, H4, WITH 147 BP DNA)
--RA---- +1zla_C +--------------1 --RG---- +----2 +8ox0_C ! ! --RA--RA +-3 +--------------6a5l_g ! ! --RG---- +---4 +-------------------5x0y_G ! ! --RG---- +-5 +---------------------8jla_C ! ! ----RA-- +-6 +-------------------------6g0l_D ! ! LCRT---- --7 +--------------------------8hr1_E ! --RT---- +--------------------------8grq_A |
> 7ux9_C:ARABIDOPSIS DDM1 BOUND TO NUCLEOSOME (H2A.W, H2B, H3.3, H4, WITH 147 BP DNA)
----------RA-- +-----------------------------6g0l_D +-9 --------RA--RA +-10 +-----------------------------6a5l_g ! ! --------RG---- ! +-----------------------------8ox0_C ! --------RA---- ! +1zla_C +-11 +--------------4 --------RG---- ! ! ! +8jla_C ! ! +---------7 --------RT---- ! ! ! ! +8u14_G ! ! ! +---------------1 --------RG---- ! ! ! +5x0y_G ! +---8 --------RA---- ! ! +7xsx_a -12 ! +-------------3 --------RT---- ! ! ! +8grq_A ! +-----------6 --------RG---- ! ! +7e9c_G ! ! +----------2 --------RG---- ! +--5 +8txv_G ! ! LC------RT---- ! +----------8hr1_E ! --RAAANA------ +-----------------------------1jfi_B |
> 7uy7_E:TETRAHYMENA CST WITH POLYMERASE ALPHA-PRIMASE
--IT----------------------QGQAVT--FTITIGNGSGYGFT--VAKTLTKARG L +------------3iay_A +----------1 --------------DG--FA----FG------------------------WC----KT-- ! +------------2dtu_A --3 PI--NTNTFC--YT--RG--WGDG--------WG-------------------------- L ! +---------------------2xhb_A +-2 ----------RT--------------RC----------LC--SCYG--FAYA----KA-- L +---------------------8g9l_A |
> 7v5n_B:CRYSTAL STRUCTURE OF FAB FRAGMENT OF BEVACIZUMAB BOUND TO DNA APTAMER
TGTGNGYTNGWGNTTTYTTT--YGHGYTYTWG-- +-7v5n_B +--------------1 ------------------------------YA-- +-------2 +-3vw3_H ! ! ----SCYA--------YT---------------- --3 +----------------2fr4_B ! --------------------ST----------WG +------------------------7v5n_E |
> 7v94_A:CRYO-EM STRUCTURE OF THE CAS12C2-SGRNA-TARGET DNA TERNARY COMPLEX
----NGLGQGQTQA--ECNC-- L +-----------------------------7way_A +-1 --------------------AT L +-2 +-----------------------------6ny2_Y ! ! --------------SC------ --3 +-----------------------------7c7l_A ! LTRT------------------ L +-----------------------------7pla_A |
> 7vdt_B:THE MOTOR-NUCLEOSOME MODULE OF HUMAN CHROMATIN REMODELING PBAF- NUCLEOSOME COMPLEX
--RC---- +6qld_f +---------6 --RT---- ! ! +8u14_G +------9 +-1 --RG---- ! ! +8ox0_C ! ! --RG---- ! +----------5x0y_G +---11 --RA---- ! ! +1zla_C ! ! +--------------4 --RA--RA ! +-10 +6a5l_g ! ! --RG---- ! +---------------8jla_C -13 --RG---- ! +---------8txv_G ! +--------8 ----RA-- ! ! +---------6g0l_D ! ! --RA---- +--12 +7xsx_a ! +-2 LARG---- ! +---------3 +7unc_a ! ! ! --RT---- +--------7 +8grq_A ! LC------ ! +8bvw_e +--------5 LCRT---- +8hr1_E |
> 7vo0_N:STREPTOMYCES COELICOLOR ZINC UPTAKE REGULATOR COMPLEXED WITH ZINC AND DNA (TRIMER OF DIMERS)
TT------KATTQTTG----LTRT----KAFTYT L +-----------------------------2p7c_B +-2 --------------------YG------------ +-3 +-----------------------------3eyi_B ! ! ------------NAST--RTHT--ST-------- L +-4 +-----------------------------3l2c_A ! ! --------------NAST--HT--STLT------ L +-5 +-----------------------------7cby_C ! ! --VTSARGTA--RT-------------------- L --6 +-----------------------------6za3_B ! ------------QTVA----QTNA---------- L ! +8osb_E +-----------------------------1 --------------VT----KGNA----KA---- L +2lkx_A |
> 7vou_C:THE CRYSTAL STRUCTURE OF HUMAN FORKHEAD BOX PROTEIN IN COMPLEX WITH DNA 1
--------------NAST--RGHT--STLT-------- L +------7cby_C +-----------1 --------------NAST--RTHT--ST---------- L +---2 +------3l2c_A ! ! RT--LANTHGTTETYTRG-------------------- L +-3 +------------------1f4k_B ! ! --------RGSTRTSTHG--------------RA---- L +-4 +----------------------3zpl_B ! ! --TT------KATTQTTG----LTRT----KA--FTYT L --5 +------------------------2p7c_B ! ------------KT--RGAT--RGNT------------ L +--------------------------8smh_F |
> 7vox_H:THE CRYSTAL STRUCTURE OF HUMAN FORKHEAD BOX PROTEIN A IN COMPLEX WITH DNA 2
--------------NASTRGHT--STLT---- L +------7cby_C +-----------1 ----ST--------NASTRTHT--ST------ L +---2 +------3l2c_A ! ! --LA--NTHGTTETYTRG-------------- L +-3 +------------------1f4k_B ! ! --------RGSTRTSTHG------------RA L --4 +----------------------3zpl_B ! TT--------KATTQTTG--LTRT----KA-- L +------------------------2p7c_B |
> 7wlr_B:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING KOMAGATAELLA PASTORIS HISTONES
--RC---- +6qld_f +--------6 --RT---- ! ! +8u14_G ! +-1 --RG---- +-7 +8ox0_C ! ! --RG---- ! ! +8txv_G +---8 +---------2 --RG---- ! ! +5x0y_G ! ! --RA---- ! ! +1zla_C ! +-----------4 --RA--RA +-10 +6a5l_g ! ! LARG---- ! ! +7unc_a ! ! +--------------3 --RT---- ! ! ! +8grq_A +--11 +-9 LC------ ! ! ! +8bvw_e ! ! +-------------5 LCRT---- +-12 ! +8hr1_E ! ! ! ----RA-- ! ! +-----------------6g0l_D -13 ! --RG---- ! +---------------------8jla_C ! --RA---- +-----------------------7xsx_a |
> 7wlr_D:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING KOMAGATAELLA PASTORIS HISTONES
----RA-- +6g0l_D +------------1 --RC---- ! +6qld_f ! --RA---- +---------7 +7xsx_a ! ! +-2 LC------ ! ! +----------3 +8bvw_e ! ! ! ! --RT---- ! +-5 +8grq_A +--11 ! LCRT---- ! ! +----------8hr1_E ! ! --RT---- ! ! +----------8u14_G ! ! +---------6 LARG---- ! +-10 +----------7unc_a +-12 ! --RG---- ! ! +--------------------8txv_G ! ! --RA---- ! ! +1zla_C ! ! +--------------4 --RG---- -13 ! +----8 +8ox0_C ! ! ! ! --RG---- ! +------9 +--------------5x0y_G ! ! --RG---- ! +-------------------8jla_C ! --RA--RA +-----------------------------6a5l_g |
> 7wlr_E:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING KOMAGATAELLA PASTORIS HISTONES
RG-------- +8jh2_e +--------------3 RG--RT---- +-------6 +8grq_A ! ! RGLCRT---- +--8 +---------------8hr1_E ! ! ------RA-- ! +-----------------------6g0l_D ! ----RG---- ! +8txv_G -10 +--------------1 ----RG---- ! +-----5 +5x0y_G ! ! ! ----RG---- ! +---7 +--------------8ox0_C ! ! ! ----RG---- ! ! +--------------------8jla_C +-9 ----RT---- ! +8u14_G ! +-2 ----RA---- +-----------------------4 +1zla_C ! ----RA--RA +6a5l_g |
> 7wlr_G:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING KOMAGATAELLA PASTORIS HISTONES
--RG---- +8txv_G +---------------1 --RG---- +--10 +8ox0_C ! ! --RA--RA ! +---------------6a5l_g +---13 --RT---- ! ! +8smw_G ! ! +---------------2 --RG---- ! +--11 +5x0y_G ! ! --RG---- ! +---------------8jla_C ! --RT---- -15 +8u14_G ! +-----------3 --RA---- ! +---------8 +1zla_C ! ! ! LCRT---- ! ! +-----------8hr1_E ! ! --RG--RG +-14 +-------8kcb_A ! +-----------7 LARG---- ! ! +-------7unc_a ! ! --RC---- +-12 +---6qld_f ! +-------6 ----RA-- ! ! ! +-6g0l_D ! ! +-5 LC------ +-------9 +-8bvw_e ! --RA---- ! +7xsx_a +-----------4 --RT---- +8grq_A |
> 7x74_H:CRYO-EM STRUCTURE OF STREPTOMYCES COELICOLOR TRANSCRIPTION INITIAL COMPLEX WITH TWO ZUR DIMERS
TT------KATTQTTG----LTRT----KA--FTYT L +-----------------------------2p7c_B ! --------------NAST--HT--STLT-------- L +-4 +------7cby_C ! ! +-----------2 ------------NAST--RTHT--ST---------- L ! +----------3 +------3l2c_A +-5 ! ------RGSTRTSTHG--------------RA---- L ! ! +------------------3zpl_B +-6 ! --------------------YG-------------- ! ! +-----------------------------3eyi_B +-7 ! --------------VT----KGNA----KA------ L ! ! +-----------------------------2lkx_A ! ! --------------NC----ICNA--RGRG------ L +-8 +-----------------------------4xrm_B ! ! ------------QTVA----QTNA------------ L ! ! +---8osb_E --9 +-------------------------1 --------------IA----QCNA--YC-------- L ! +---3rkq_B ! --VTSARGTA--RT---------------------- L +-----------------------------6za3_B |
> 7xcr_E:CRYO-EM STRUCTURE OF DOT1L AND H2BK34UB-H3K79NLE NUCLEOSOME 1:1 COMPLEX
RG-------- +8jh2_e +---------------1 RG--RT---- +------4 +8grq_A ! ! RGLCRT---- +-6 +---------------8hr1_E ! ! ----RG---- +-7 +----------------------8ox0_C ! ! ----RG---- +-8 +------------------------5x0y_G ! ! ----RA--RA ! +-------------------------6a5l_g +-9 ----RA---- ! ! +---------1zla_C ! ! +-------3 ------RA-- ! ! ! +---------6g0l_D -10 +---------5 ----RG---- ! ! +8txv_G ! +-----------------2 ----RG---- ! +8jla_C ! ----RT---- +-----------------------------8u14_G |
> 7xcr_F:CRYO-EM STRUCTURE OF DOT1L AND H2BK34UB-H3K79NLE NUCLEOSOME 1:1 COMPLEX
LCRT---- +-----------------------------8hr1_E ! --RT---- ! +8u14_G ! +-1 --RA---- ! +---------3 +1zla_C ! ! ! --RG---- ! +--------4 +5x0y_G --9 ! ! --RA--RA ! +-5 +---------6a5l_g ! ! ! --RG---- ! ! ! +8txv_G ! +-6 +------------------2 --RG---- ! ! ! +8ox0_C ! +---7 ! ----RA-- ! ! ! +-------------------6g0l_D +---8 ! --RT---- ! +---------------------8grq_A ! --RG---- +-------------------------8jla_C |
> 7xd0_F:CRYO-EM STRUCTURE OF H2BK34UB NUCLEOSOME
--RG---- +-----------------------------8jla_C +-9 --RG---- ! +-----------------------------5x0y_G ! --RT---- ! +8smw_G ! +-1 --RA---- ! +---------3 +1zla_C ! ! ! --RA--RA +-10 +--------4 +6a5l_g ! ! ! ! --RT---- ! ! ! ! +8u14_G ! ! +-6 +---------2 --RG---- ! ! ! ! +8ox0_C ! ! +-7 ! LCRT---- ! ! ! ! +------------------8hr1_E -11 ! ! ! --RT---- ! +------8 +--------------------8grq_A ! ! --RG---- ! ! +---------8txv_G ! +------------5 ----RA-- ! +---------6g0l_D ! --RG--RG +-----------------------------8kcb_A |
> 7xjg_C:CRYO-EM STRUCTURE OF E.COLI RETRON-EC86 IN COMPLEX WITH ITS EFFECTOR AT 2.5 ANGSTROM
--TT------KATTQTTGLTRTKAFTYT L +-----------------------------2p7c_B +-1 ------------------YG-------- +-2 +-----------------------------3eyi_B ! ! RT--LANTHGTTETYTRG---------- L --3 +-----------------------------1f4k_B ! ------DCLT--AGTTRG--RG------ L +-----------------------------5h3r_A |
> 7xsx_a:RNA POLYMERASE II ELONGATION COMPLEX TRANSCRIBING A NUCLEOSOME (EC49)
--RA---- +8rbx_M +-1 LARG---- +-------------2 +7unc_a ! ! --RT---- ! +8grq_A +-9 LC------ ! ! +---8bvw_e ! +---------8 --RA---- +-11 ! +7xsx_a ! ! +--7 LCRT---- ! ! +8hr1_E +-12 ! --RA--RA ! ! +--------------6a5l_g ! ! --RG---- ! +----------------8jla_C +----13 --RG---- ! ! +8txv_G ! ! +--------------3 --RG---- ! ! ! +5x0y_G ! +-10 --RT---- ! ! +8u14_G -14 ! +-4 --RA---- ! +--------------6 +1zla_C ! ! --RG---- ! +8ox0_C ! ----RA-- ! +6g0l_D +-----------------------5 --RC---- +6qld_f |
> 7xyf_B:CRYO-EM STRUCTURE OF FFT3-NUCLEOSOME COMPLEX WITH FFT3 BOUND TO SHL+2 POSITION OF THE NUCLEOSOME
------RC------ +7xyf_B +-5 ----------KG-- +---------6 +7nkx_f ! ! ------RG------ +---8 +-8jla_C ! ! ------RG------ ! +-----------5x0y_G +----11 ------RT------ ! ! +7kbd_C ! ! +--------------1 ------RG------ ! ! ! +8ox0_C ! +-9 ------RA------ ! ! +1zla_C +-13 +-------------3 ------RA----RA ! ! +6a5l_g ! ! ----KT-------- L ! ! +----7cvo_A ! ! +-------------7 --------RA---- ! ! ! +----6g0l_D +--14 +-12 --LA--RG------ ! ! ! +7unc_a ! ! +-----------------4 --LC--RT------ ! ! +8hr1_E ! ! ------RG------ +-15 ! +7ccr_A ! ! ! +--------------2 ------RT------ ! ! +-------10 +8grq_A ! ! ! ------RT------ +-16 ! +--------------7zs9_e ! ! ! IT------------ ! ! +---------------------------3wkj_D +-17 ! ------RG------ ! ! +----------------------------6iy2_A +-18 ! --LT--RC------ ! ! +----------------------------3kwq_E -19 ! --LT--RC------ ! +----------------------------4xzq_E ! ------RG------ +----------------------------7y7i_E |
> 7y7i_E:CHICKEN KNL2 IN COMPLEX WITH THE CENP-A NUCLEOSOME
RG--RT---- +-----------------------------8grq_A ! RG-------- ! +8jh2_e ! +------------------2 RGLCRT---- ! +--4 +8hr1_E ! ! ! ------RA-- +-9 +-5 +-------------------6g0l_D ! ! ! ! ----RG---- ! ! +-6 +----------------------5x0y_G ! ! ! ! ----RG---- ! ! +-7 +------------------------8jla_C ! ! ! ! ----RA--RA ! ! ! +-------------------------6a5l_g -10 +-8 ----RT---- ! ! +8u14_G ! ! +--------------1 ----RG---- ! +------------3 +8ox0_C ! ! ----RA---- ! +--------------1zla_C ! ----RG---- +-----------------------------8txv_G |
> 7yqk_E:CRYO-EM STRUCTURE OF GAMMAH2AXK15UB-H4K20ME2 NUCLEOSOME BOUND TO 53BP1
RG-------- +8jh2_e +---------------2 RG--RT---- +--------6 +8grq_A ! ! RGLCRT---- ! +---------------8hr1_E ! ----RA---- ! +------8rbx_M +---10 +-----------4 ------RA-- ! ! +----7 +------6g0l_D ! ! ! ! ----RG---- ! ! ! +------------------8jla_C ! ! ! ----RA---- ! +-9 +1zla_C ! ! +-------------------3 ----RG---- -11 ! ! +8ox0_C ! +---8 ----RG---- ! ! +8txv_G ! ! +--------------1 ----RG---- ! +----5 +5x0y_G ! ! ----RA--RA ! +--------------6a5l_g ! ----RT---- +-----------------------------8u14_G |
> 7yrd_A:HISTONE METHYLTRANSFERASE
RG-------- +8jh2_e +---------------3 RG--RT---- +---------8 +8grq_A ! ! RGLCRT---- ! +---------------8hr1_E ! ----RA---- ! +--7xsx_a ! +------------5 ------RA-- ! ! +--6g0l_D ! ! ----RA---- -12 +----9 +1zla_C ! ! ! +-------------4 ----RA--RA ! ! ! ! +6a5l_g ! ! +-7 ----RG---- ! +-10 ! +8txv_G ! ! ! +--------------1 ----RG---- ! ! ! +8ox0_C ! ! ! ----RG---- +-11 +--------------------8jla_C ! ----RT---- ! +8u14_G ! +--------------2 ----RG---- +-------6 +5x0y_G ! ----RG---- +--------------7e9c_G |
> 7ywx_E:STRUCTURE OF THE HUMAN CCAN CENP-A ALPHA-SATELLITE COMPLEX
LC------ +8bvw_e +--------------1 --RT---- ! +8grq_A +----8 LARG---- ! ! +7unc_a +-12 +-------------5 LCRT---- ! ! +8hr1_E ! ! --RG---- ! +-------------------5x0y_G ! --RA---- ! +--7xsx_a ! +------------7 ----RA-- -13 ! ! +6g0l_D ! ! +--3 --RC---- ! +-10 +6qld_f ! ! ! --RG---- ! ! ! +8txv_G ! ! +---------------4 --RA--RA +-11 +6a5l_g ! --RT---- ! +8u14_G ! +--------------2 --RG---- ! ! +8ox0_C +---9 --RA---- ! +1zla_C +-------------6 --RG---- +8jla_C |
> 7yz7_A:CRYSTAL STRUCTURE OF THE ZEBRAFISH FOXH1 BOUND TO THE TGTGGATT SITE
------------NAST--RGHT--STLT-------- L +------7cby_C +-----------1 ------------NAST--RTHT--ST---------- L +---2 +------3l2c_A ! ! ----------RTSTHG--------------RA---- L +-3 +------------------3zpl_B ! ! RT--LAHGTTETYTRG-------------------- L +-4 +----------------------1f4k_B ! ! --TT----KATTQTTG----LTRT----KA--FTYT L --5 +------------------------2p7c_B ! ----------KT--RGAT--RGNT------------ L +--------------------------8smh_F |
> 7yzb_A:CRYSTAL STRUCTURE OF THE HUMAN FOXH1 BOUND TO THE TGTGGATT SITE
----------NAST--RGHT--STLT---- L +------7cby_C +------------1 ----------NAST--RTHT--ST------ L +----2 +------3l2c_A ! ! TT----KATTQTTG----LTRT----KAFT L +----3 +-------------------2p7c_B ! ! --------KT--RGAT--RGNT-------- L +-4 +------------------------8smh_F ! ! ----------NC----ICNA--RGRG---- L --5 +-----------------------------4xrm_B ! --KTHG------------------------ +-----------------------------5hdn_C |
> 7yze_A:CRYSTAL STRUCTURE OF THE HUMAN FOXA2 BOUND TO THE TGTTTACT SITE (FORKHEAD MOTIF GTAAACA)
----------------NASTRGHT--STLT---- L +------7cby_C +-----------1 ------ST--------NASTRTHT--ST------ L +---2 +------3l2c_A ! ! RT--LA--NTHGTTETYTRG-------------- L +-3 +------------------1f4k_B ! ! ----------RGSTRTSTHG------------RA L --4 +----------------------3zpl_B ! --TT--------KATTQTTG--LTRT----KA-- L +------------------------2p7c_B |
> 7yzg_A:CRYSTAL STRUCTURE OF THE XENOPUS FOXH1 BOUND TO THE TGTGGATT SITE
----------NASTRGHT--STLT-------- L +------7cby_C +-----------1 ----------NASTRTHT--ST---------- L +---2 +------3l2c_A ! ! RT--LATTETYTRG------------------ L +-3 +------------------1f4k_B ! ! ------STRTSTHG------------RA---- L --4 +----------------------3zpl_B ! --TT--KATTQTTG--LTRT----KA--FTYT L +------------------------2p7c_B |
> 7zs9_e:YEAST RNA POLYMERASE II TRANSCRIPTION PRE-INITIATION COMPLEX WITH THE +1 NUCLEOSOME (COMPLEX A)
RG------------ +8jh2_e +---------------3 RG------RT---- +--------7 +8grq_A ! ! RG--LC--RT---- ! +---------------8hr1_E ! --------RA---- ! +--7xsx_a +-11 +-------------5 ----------RA-- ! ! +---8 +--6g0l_D ! ! ! ! --------RG---- ! ! +-9 +----------------5x0y_G ! ! ! ! --------RG---- ! +-10 +--------------------8jla_C ! ! --------RA---- +--12 ! +1zla_C ! ! +----------------------4 --------RG---- ! ! +8ox0_C ! ! --------RG---- ! ! +7e9c_G ! ! +-1 --------RG---- -13 ! +---------2 +8txv_G ! ! ! ! --------RA--RA ! +---------------6 +6a5l_g ! ! --------RT---- ! +---------8u14_G ! --RAAANA------ +-----------------------------1jfi_B |
> 8a3y_a:STRUCTURE OF MAMMALIAN POL II-DSIF-SPT6-PAF1-TFIIS-HEXASOME ELONGATION COMPLEX
HARA----LT----RC------ +-----------------------------3kwq_E +-18 --RG----------RG------ ! +-----------------------------6iy2_A ! --RT----LA----RG------ ! +7unc_a ! +-----------------------1 --RG----------RT------ ! ! +8grq_A ! ! --RT--RG-------------- ! ! +---------6pww_K ! ! +-------7 --------------RG------ ! ! ! +---------5x0y_G ! ! +-11 --RCYA--------RG------ +-19 +-16 ! ! +7ccr_A ! ! ! ! ! +-----------------2 --RG----LC----RT------ ! ! ! ! +-12 +8hr1_E ! ! ! ! ! ! --RG----------RT------ ! ! ! ! ! ! +---------7zs9_e ! ! ! ! ! +--------8 --------------RA------ ! ! ! ! ! ! +1zla_C ! ! ! ! ! +---------3 --------------RG------ ! ! ! +-14 +8ox0_C ! ! ! ! HGRGYG--QC----RG------ ! ! ! ! +---------7y7i_E ! ! ! ! +--------6 ----------------RA---- ! +-17 ! ! +---------6g0l_D ! ! +-13 ------------------KG-- -20 ! ! +7nkx_f ! ! ! +--------------4 --------------RG------ ! ! +--9 +8jla_C ! ! ! --------------RA----RA ! ! +---------------6a5l_g ! ! --------------RC------ ! ! +--7xyf_B ! ! +-------------5 --------------RT------ ! ! +--10 +--7kbd_C ! ! ! ! ------------IT-------- ! +----15 +----------------3wkj_D ! ! ----------KT---------- L ! +--------------------7cvo_A ! HARAYT--LT----RC------ +-----------------------------4xzq_E |
> 8aag_A:H1-BOUND PALINDROMIC NUCLEOSOME, STATE 1
RG--RT---- +-----------------------------8grq_A ! RG-------- ! +8jh2_e ! +------------------3 RGLCRT---- ! +--5 +8hr1_E ! ! ! ------RA-- -10 +---7 +-------------------6g0l_D ! ! ! ----RG---- ! ! +----------------------5x0y_G ! ! ----RG---- ! ! +8txv_G ! ! +--------------1 ----RG---- +--9 ! +8ox0_C ! +-------4 ----RA---- ! ! ! +1zla_C ! +-6 +-------------2 ----RA--RA ! ! ! +6a5l_g +--8 ! ----RG---- ! +----------------------8jla_C ! ----RT---- +-----------------------8u14_G |
> 8atf_Q:NUCLEOSOME-BOUND INO80 ATPASE
HARA----LT----RC------ +-----------------------------3kwq_E ! --RG----------RT------ ! +7zs9_e ! +----------------------1 --RG----------RT------ ! ! +8grq_A ! +-14 --RT----LA----RG------ ! ! ! +7unc_a ! ! +---------------------4 --RG----LC----RT------ ! ! +8hr1_E ! ! --RT--RG-------------- ! ! +---------6pww_K ! ! +-----8 --------------RA----RA ! ! ! +---------6a5l_g ! ! ! ------------------KG-- ! ! ! +7nkx_f +-18 +--15 ! +---------5 --------------RG------ ! ! ! ! +--11 ! +8jla_C ! ! ! ! ! ! +-9 --------------RC------ ! ! ! ! ! ! ! ! +--7xyf_B ! ! ! ! ! ! ! +-------6 --------------RA------ ! ! ! ! ! ! ! ! +1zla_C ! ! ! ! ! +-10 +--3 --------------RG------ ! ! ! ! +-12 ! +8ox0_C ! ! ! ! ! ! ! --------------RT------ ! ! +-16 ! ! ! ! +7kbd_C ! ! ! ! ! ! ! +------------2 --------------RG------ +-19 ! ! ! +--13 ! +5x0y_G ! ! ! ! ! ! ! HGRGYG--QC----RG------ ! ! ! ! ! ! +-------------------7y7i_E ! ! ! ! ! ! --RCYA--------RG------ ! ! +-17 ! ! +--------7ccr_A ! ! ! ! +----------7 ----------------RA---- ! ! ! ! +--------6g0l_D -20 ! ! ! ------------IT-------- ! ! ! +---------------------------3wkj_D ! ! ! ----------KT---------- L ! ! +---------------------------7cvo_A ! ! --RG----------RG------ ! +-----------------------------6iy2_A ! HARAYT--LT----RC------ +-----------------------------4xzq_E |
> 8b4h_A:ISTA TRANSPOSASE CLEAVED DONOR COMPLEX
----------HGDTQGECSCKTET +-----------------------------8w34_A ! QTVAQTNA---------------- L --3 +8osb_E ! +---------------1 --IAQCNAMG-------------- L +------------2 +1b72_A ! --IAQCNAYC-------------- L +----------------3rkq_B |
> 8bvw_e:RNA POLYMERASE II PRE-INITIATION COMPLEX WITH THE DISTAL +1 NUCLEOSOME (PIC-NUC18W)
RG------RT---- +-----------------------------8grq_A ! RG------------ ! +8jh2_e ! +--------------------4 RG--LC--RT---- ! ! +8hr1_E ! ! --------RA---- ! ! +--7xsx_a +-12 +---9 +-------------5 ----------RA-- ! ! ! ! ! +--6g0l_D ! ! ! ! +-7 --------RA---- ! ! ! ! ! ! +1zla_C ! ! ! ! ! ! +--------------3 --------RG---- ! ! ! +--8 +-6 +8ox0_C ! ! ! ! ! --------RA--RA ! +--11 ! +--------------6a5l_g ! ! ! --------RG---- -13 ! +------------------8jla_C ! ! --------RT---- ! ! +8u14_G ! ! +---------------------1 --------RG---- ! ! ! +5x0y_G ! +--10 --------RG---- ! ! +7e9c_G ! +---------------------2 --------RG---- ! +8txv_G ! --RAAANA------ +-----------------------------1jfi_B |
> 8byq_e:RNA POLYMERASE II PRE-INITIATION COMPLEX WITH THE PROXIMAL +1 NUCLEOSOME (PIC-NUC10W)
RG-------- +8jh2_e +---------------1 RG--RT---- +------2 +8grq_A ! ! RGLCRT---- +-3 +---------------8hr1_E ! ! ------RA-- +-4 +----------------------6g0l_D ! ! ----RG---- +-5 +------------------------8ox0_C ! ! ----RG---- +-6 +-------------------------8jla_C ! ! ----RG---- +-7 +--------------------------5x0y_G ! ! ----RA---- +-8 +--------------------------1zla_C ! ! ----RA--RA +-9 +---------------------------6a5l_g ! ! ----RT---- -10 +-----------------------------8u14_G ! ----RG---- +-----------------------------8txv_G |
> 8bzm_E:FOXK1-ELF1-HETERODIMER BOUND TO DNA
--------------NAST--RGHT--STLT------ L +------7cby_C +-----------1 ----ST--------NAST--RTHT--ST-------- L +---2 +------3l2c_A ! ! --LA--NTHGTTETYTRG------------------ L +-3 +------------------1f4k_B ! ! --------RGSTRTSTHG--------------RA-- L +-4 +----------------------3zpl_B ! ! TT--------KATTQTTG----LTRT----KA--FT L +--5 +------------------------2p7c_B ! ! ------------KT--RGAT--RGNT---------- L --6 +--------------------------8smh_F ! ------------SA------------------RG-- +-----------------------------2xcr_U |
> 8ceo_r:YEAST RNA POLYMERASE II TRANSCRIPTION PRE-INITIATION COMPLEX WITH CORE MEDIATOR AND THE +1 NUCLEOSOME
--RG--------RG------ +-----------------------------6iy2_A +-17 HARA----LT--RC------ ! +-----------------------------3kwq_E ! --RT----LA--RG------ ! +7unc_a ! +----------------1 --RG--------RT------ ! ! +8grq_A ! +-11 --RG--------RT------ ! ! ! +---------7zs9_e ! ! +------8 ------------RG------ ! +-13 +---------8ox0_C ! ! ! --RCYA------RG------ ! ! ! +7ccr_A ! ! +-------------------3 --RG----LC--RT------ +-18 ! +8hr1_E ! ! ! --RT--RG------------ ! ! ! +---------6pww_K ! ! ! +-----9 ------------RA------ ! ! ! ! ! +1zla_C ! ! +----15 ! +--------5 ------------RG------ ! ! ! ! ! +5x0y_G ! ! ! ! +-10 ------------RC------ ! ! ! ! ! ! +7xyf_B ! ! ! ! ! ! +-4 ----------------KG-- ! ! ! ! ! +-------------6 +7nkx_f ! ! ! ! +-12 ! ------------RG------ -19 ! ! ! ! ! +-8jla_C ! +-16 ! ! ! ------------RT------ ! ! ! ! ! +7kbd_C ! ! +-14 +------------------2 ------------RA----RA ! ! ! +6a5l_g ! ! ! HGRGYG--QC--RG------ ! ! ! +---------7y7i_E ! ! +----------7 --------------RA---- ! ! +---------6g0l_D ! ! ----------IT-------- ! +---------------------------3wkj_D ! HARAYT--LT--RC------ +-----------------------------4xzq_E |
> 8com_A:STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
------RT---- +-----------------------------8grq_A +-10 --LC--RT---- ! +-----------------------------8hr1_E ! ------RA---- ! +--7xsx_a ! +---4 --------RA-- ! +-----5 +--6g0l_D ! ! ! ------RT---- +-11 +---6 +------8u14_G ! ! ! ! ------RA---- ! ! ! ! +1zla_C ! ! +-8 +-----------3 ------RA--RA ! ! ! ! +6a5l_g ! ! ! ! ------RG---- ! ! ! ! +8txv_G ! ! ! +----------------1 ------RG---- -12 +-----------9 +5x0y_G ! ! ------RG---- ! ! +7e9c_G ! ! +--------------2 ------RG---- ! +--7 +8ox0_C ! ! ------RG---- ! +--------------8jla_C ! RAAANA------ +-----------------------------1jfi_B |
> 8com_B:STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
--RA---- +1zla_C +--------------1 --RG---- +----2 +8ox0_C ! ! --RA--RA +-3 +--------------6a5l_g ! ! --RG---- +---4 +-------------------5x0y_G ! ! --RG---- +-5 +---------------------8jla_C ! ! ----RA-- +-6 +-------------------------6g0l_D ! ! --RT---- --7 +--------------------------8grq_A ! LCRT---- +--------------------------8hr1_E |
> 8com_C:STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
--------RG---- +-----------------------------8jla_C ! --------RT---- ! +8u14_G ! +--------------------1 --------RG---- ! ! +8ox0_C ! ! --------RG---- +-12 +-10 +7e9c_G ! ! ! ! +-2 --------RG---- ! ! ! ! +---------3 +8txv_G ! ! ! ! ! ! --------RG---- ! ! ! +----------7 +5x0y_G ! ! ! ! --------RA---- ! ! ! ! +1zla_C ! +-----11 +--------5 --------RA--RA ! ! +6a5l_g ! ! --------RG--RG -13 ! +------8kcb_A ! ! +----------6 ----------RA-- ! ! ! +------6g0l_D ! +----9 --------RA---- ! ! +7xsx_a ! ! +--------------4 --------RT---- ! +--8 +8grq_A ! ! LC------RT---- ! +--------------8hr1_E ! --RAAANA------ +-----------------------------1jfi_B |
> 8com_H:STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
----------RA-- +-----------------------------6g0l_D ! RT------------ ! +-----9fgq_D ! +------6 --------RA---- ! ! ! +1zla_C ! +----------8 +-----4 --------RG---- +-12 ! ! +8ox0_C ! ! ! ! --------RG---- ! ! ! +------------8jla_C ! ! ! --------RG---- ! ! ! +7e9c_G ! ! ! +-1 --------RT---- ! +----11 +---------2 +8u14_G ! ! ! ! --------RG---- ! ! +----------7 +5x0y_G ! ! ! ! --------RG---- -13 ! ! ! +8txv_G ! ! ! +---------5 --------RA--RA ! +-10 +6a5l_g ! ! --------RA---- ! ! +7xsx_a ! ! +--------------3 --------RT---- ! +-----9 +8grq_A ! ! ----LC--RT---- ! +--------------8hr1_E ! --RAAANA------ +-----------------------------1jfi_B |
> 8cww_A:STRUCTURE OF S. CEREVISIAE HOP1 CBR BOUND TO A NUCLEOSOME
RG-------- +8jh2_e +---------------2 RG--RT---- +------4 +8grq_A ! ! RGLCRT---- +-7 +---------------8hr1_E ! ! ------RA-- +-8 +----------------------6g0l_D ! ! ----RG---- ! +------------------------5x0y_G ! ----RG---- ! +8txv_G +--9 +--------------1 ----RG---- ! ! +----3 +8ox0_C ! ! ! ! ----RA---- ! ! +--5 +--------------1zla_C -10 ! ! ! ----RA--RA ! +---6 +-------------------6a5l_g ! ! ----RG---- ! +----------------------8jla_C ! ----RT---- +-----------------------------8u14_G |
> 8d0b_F:HUMAN CST-DNA POLYMERASE ALPHA/PRIMASE PREINITIATION COMPLEX BOUND TO 4XTEL-FOLDBACK TEMPLATE
----IT------------------------------QGQAVT--FTIGNGSGYGFT--VAKTLTKARG-- L +------------3iay_A +--1 ------------------------DG--FA----FG----------------------WC---------- +-------2 +------------2dtu_A ! ! PIVIIIPGFIKGRINTNTFCDAYT--RG--WGDG--------WG-------------------------- L --3 +---------------2xhb_A ! --------------------RT--------------RC--------LC--SCYG--FAYA--------RG L +-----------------------8g9l_A |
> 8d0k_F:HUMAN CST-DNA POLYMERASE ALPHA/PRIMASE PREINITIATION COMPLEX BOUND TO 4XTEL-FOLDBACK TEMPLATE - PRIM2C ADVANCED PIC
----IT------------------------------QGQAVT--FTITIGNGSGYGFT--VAKTLTKARG L +------------3iay_A +--1 ------------------------DG--FA----FG------------------------WC-------- +-------2 +------------2dtu_A ! ! PIVIIIPGFIKGRINTNTFCDAYT--RG--WGDG--------WG-------------------------- L --3 +---------------2xhb_A ! --------------------RT--------------RC----------LC--SCYG--FAYA-------- L +-----------------------8g9l_A |
> 8ejp_B:CRYSTAL STRUCTURE OF THE HOMEODOMAIN OF PLATYPUS SDUX IN COMPLEX WITH DNA CONTAINING 5-BROMOURACIL
--RC--IAQCNAYC-- L +-----------------------------3rkq_B +-2 RART--VTKGNA--KA L +-3 +-----------------------------2lkx_A ! ! --RT--IAQCNAMG-- L +-4 +-----------------------------1b72_A ! ! --RTQTVAQTNA---- L ! ! +8osb_E --5 +----------------------------1 ------NCICNARGRG L ! +4xrm_B ! --RTYTNC--NAKG-- L +-----------------------------8pi8_B |
> 8eml_B:CRYSTAL STRUCTURE OF GSX2 HOMEODOMAIN IN COMPLEX WITH DNA
RT--IAQCNAMG---- L +-----------------------------1b72_A ! RTQTVAQTNA------ L ! +8osb_E ! +---------------1 RT--VTKGNA--KA-- L +-5 +----2 +2lkx_A ! ! ! ! ----NCICNARGRG-- L ! ! +--3 +---------------4xrm_B ! ! ! ! RC--IAQCNAYC---- L --6 +-----4 +--------------------3rkq_B ! ! ----VTCCNAQA--RT L ! +-----------------------8g87_X ! ----------YCFAKC L +-----------------------------6pe2_B |
> 8g57_E:STRUCTURE OF NUCLEOSOME-BOUND SIRTUIN 6 DEACETYLASE
RG-------- +8jh2_e +---------------2 RG--RT---- +------5 +8grq_A ! ! RGLCRT---- +-7 +---------------8hr1_E ! ! ------RA-- +-8 +----------------------6g0l_D ! ! ----RG---- ! +------------------------8jla_C ! ----RA---- +--9 +1zla_C ! ! +--------------3 ----RG---- ! ! +----4 +8ox0_C ! ! ! ! ----RA--RA ! +------6 +--------------6a5l_g -10 ! ----RT---- ! ! +8u14_G ! +-------------------1 ----RG---- ! +5x0y_G ! ----RG---- +-----------------------------8txv_G |
> 8g6q_C:H2AK119UB-MODIFIED NUCLEOSOME UBIQUITIN POSITION 1
------RG------ +-----------------------------5x0y_G +-18 ------RG------ ! +-----------------------------8ox0_C ! ------RA------ ! +1zla_C ! +--------------2 ------RA----RA ! +------------7 +6a5l_g ! ! ! ------RG------ ! ! +---------------8jla_C ! ! ------RT------ ! ! +--------------------7kbd_C -19 ! +-9 ----KT-------- L ! ! ! ! +----7cvo_A ! ! ! +---------------5 --------RA---- ! ! ! +----6g0l_D ! ! ! ------RC------ ! ! ! +7xyf_B ! ! ! +---3 ----------KG-- ! ! +--11 ! +7nkx_f ! ! ! ! +----4 --LA--RG------ ! ! ! ! ! ! +7unc_a +-17 ! ! +--------6 +----1 ------RT------ ! ! ! ! ! +8grq_A ! ! ! +-8 ! LC----RT------ ! +-12 ! ! ! +---------8hr1_E ! ! ! +-10 ! ------RG------ ! ! ! ! +------------------7ccr_A ! ! ! ! ------RT------ ! +-13 ! +--------------------7zs9_e ! ! ! ! --IT---------- ! ! ! +--------------------------3wkj_D ! +-14 ! --LT--RC------ ! ! ! +---------------------------3kwq_E ! +-15 ! ------RG------ ! ! ! +---------------------------6iy2_A +-16 ! --LT--RC------ ! +---------------------------4xzq_E ! ------RG------ +---------------------------7y7i_E |
> 8gpn_C:HUMAN MENIN IN COMPLEX WITH H3K79ME2 NUCLEOSOME
--RT +---------7jzv_N +-------------------2 --RC ! ! +---6qld_f +-3 +-----1 LC-- ! ! +---8bvw_e --4 ! --RT ! +-----------------------------8com_C ! --RT +-----------------------------7on1_e |
> 8grq_H:CRYO-EM STRUCTURE OF BRCA1/BARD1 BOUND TO H2AK127-UBCH5C-UB NUCLEOSOME
------RA-- +-----------------------------6g0l_D ! RT-------- ! +----9fgq_D ! +------------3 ----RG---- ! +---6 +----5x0y_G -10 ! ! ----RG---- ! +--8 +-----------------8jla_C ! ! ! ----RA--RA ! ! +---------------------6a5l_g ! ! ----RT---- ! ! +8u14_G +----9 +-----------1 ----RA---- ! +----4 +1zla_C ! ! ! --LCRT---- ! +-5 +-----------8hr1_E ! ! ! ----RG---- ! ! ! +8txv_G +-----7 +----------------2 ----RG---- ! +8ox0_C ! ----RT---- +------------------8grq_A |
> 8gxq_D:PIC-MEDIATOR IN COMPLEX WITH +1 NUCLEOSOME (T40N) IN MH-BINDING STATE
------------------RA---- +-----------------------------6g0l_D +-19 ----------RG------------ +-20 +-----------------------------3x1t_H ! ! --------------IT-------- +-21 +-----------------------------3wkj_D ! ! ----------RT------------ ! +-----------------------------6nj9_H ! ----------RG------------ ! +-----7tn2_D ! +-------7 ----------------RA----RA ! ! +-----6a5l_g ! ! --------------------KG-- ! +-10 +7nkx_f ! ! ! +------5 ----------------RG------ ! ! ! ! +8jla_C ! ! +-----8 ----------------RA------ ! +------12 ! +1zla_C ! ! ! +-------3 ----------------RG------ ! ! ! +8ox0_C ! ! ! ----------------RC------ ! ! ! +7on1_c ! ! +---------------1 ----------------RG------ +-22 ! +5x0y_G ! ! ! ----------------RC------ ! ! +--14 +--7xyf_B ! ! ! ! +---------6 ----------------RT------ ! ! ! ! ! +--7kbd_C ! ! ! ! +-9 ------------LA--RG------ ! ! ! ! ! ! +7unc_a ! ! ! ! ! +------------2 ----------------RT------ ! ! ! ! +-11 +8grq_A ! ! +-15 ! ! ! ----------------RG------ ! ! ! ! ! ! ! +7ccr_A ! ! ! ! +------13 +-------------4 ----------------RT------ +-23 ! ! ! ! +8hr1_E ! ! ! +-16 ! ! ----------------RT------ ! ! ! ! ! ! +---------------7zs9_e ! ! ! ! ! ! ----------------RG------ ! ! ! +-17 ! +---------------------------6iy2_A ! ! ! ! ! ! ----------------RC------ ! ! ! ! ! +---------------------------3kwq_E +-24 ! +-18 ! ----------------RC------ ! ! ! ! +----------------------------4xzq_E ! ! ! ! ----------------RG------ ! ! ! +----------------------------7y7i_E +-25 ! ! ----------------RG------ ! ! ! +-----------------------------3w99_F ! ! ! ----------------RT------ -26 ! +-----------------------------5z23_C ! ! NTATATSTRG-------------- L ! +-----------------------------1dh3_C ! ------------------RG---- +-----------------------------7n8n_A |
> 8gxs_D:PIC-MEDIATOR IN COMPLEX WITH +1 NUCLEOSOME (T40N) IN H-BINDING STATE
------------------RA---- +-----------------------------6g0l_D +-19 ----------RG------------ +-20 +-----------------------------3x1t_H ! ! --------------IT-------- +-21 +-----------------------------3wkj_D ! ! ----------RT------------ ! +-----------------------------6nj9_H ! ----------RG------------ ! +----7tn2_D ! +---------7 ----------------RG------ ! ! +----5x0y_G ! ! --------------------KG-- ! +-------12 +7nkx_f ! ! ! +----------5 ----------------RG------ ! ! ! ! +8jla_C ! ! ! ! ----------------RC------ ! ! +--9 +7on1_c ! ! ! +-1 ----------------RA------ ! ! ! +---------3 +1zla_C ! ! ! ! ! ----------------RG------ ! ! +-8 +8ox0_C ! ! ! ----------------RA----RA +-22 +--14 +---------6a5l_g ! ! ! ! ----------------RC------ ! ! ! ! +--7xyf_B ! ! ! ! +---------6 ----------------RT------ ! ! ! ! ! +--7kbd_C ! ! ! ! +-10 ------------LA--RG------ ! ! ! ! ! ! +7unc_a ! ! ! ! ! +------------2 ----------------RT------ ! ! +-15 ! +-11 +8grq_A ! ! ! ! ! ! ! ----------------RG------ ! ! ! ! ! ! ! +7ccr_A ! ! ! ! +------13 +-------------4 ----------------RT------ +-23 ! ! ! ! +8hr1_E ! ! ! +-16 ! ! ----------------RT------ ! ! ! ! ! ! +---------------7zs9_e ! ! ! ! ! ! ----------------RG------ ! ! ! +-17 ! +---------------------------6iy2_A ! ! ! ! ! ! ----------------RC------ ! ! ! ! ! +---------------------------3kwq_E +-24 ! +-18 ! ----------------RC------ ! ! ! ! +----------------------------4xzq_E ! ! ! ! ----------------RG------ ! ! ! +----------------------------7y7i_E -25 ! ! ----------------RG------ ! ! +-----------------------------3w99_F ! ! ----------------RT------ ! +-----------------------------5z23_C ! NTATATSTRG-------------- L +-----------------------------1dh3_C |
> 8h0v_h:RNA POLYMERASE II TRANSCRIBING A CHROMATOSOME (TYPE I)
----RA-- +-----------------------------6g0l_D ! RT------ ! +-----9fgq_D ! +------4 --RA---- ! ! ! +1zla_C ! +------5 +----3 --RA--RA ! ! ! +6a5l_g ! ! ! --RG---- -10 ! +------------8jla_C ! +-7 --RG---- ! ! ! +8txv_G ! ! ! +--------------1 --RG---- ! ! ! ! +8ox0_C ! +-8 +----6 --RT---- ! ! ! ! +8u14_G ! ! ! +--------------2 --RG---- +-------9 ! +5x0y_G ! ! --RT---- ! +-------------------8grq_A ! --RT---- +---------------------8hr1_E |
> 8h7a_A:CRYSTAL STRUCTURE OF THE DIMER FORM KAT6A WH DOMAIN WITH ITS BOUND DOUBLE STRANDED DNA
TTKATTQTTG--LTRT----KAFTYT L +-----------------------------2p7c_B +-2 ------------YG------------ ! +-----------------------------3eyi_B --3 ------NASTRGHT--STLT------ L ! +------7cby_C +----------------------1 ------NASTRTHT--ST-------- L +------3l2c_A |
> 8he5_a:RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH RAD26 AND ELF1, STALLED AT SHL(-3.5) OF THE NUCLEOSOME
RG------RT---- +-----------------------------8grq_A ! RG------------ ! +8jh2_e ! +------------------3 RG--LC--RT---- ! +----9 +8hr1_E +-12 ! ! --------RG---- ! ! ! +-------------------8ox0_C ! ! ! --------RA---- ! ! ! +--7xsx_a ! ! ! +-------5 ----------RA-- ! ! ! ! +--6g0l_D ! +---11 +-6 --------RA---- ! ! ! ! +1zla_C ! ! ! +---------4 --------RG---- ! ! +----------7 +8jla_C -13 ! ! ! --------RG---- ! ! ! ! +8txv_G ! +-10 +------------1 --------RG---- ! ! +5x0y_G ! ! --------RT---- ! ! +--------------8u14_G ! +--------8 --------RG---- ! ! +7e9c_G ! +--------------2 --------RA--RA ! +6a5l_g ! --RAAANA------ +-----------------------------1jfi_B |
> 8hr1_F:CRYO-EM STRUCTURE OF SSX1 BOUND TO THE UNMODIFIED NUCLEOSOME AT A RESOLUTION OF 3.02 ANGSTROM
RAAANA------ +-----------------------------1jfi_B ! ------RG---- ! +7e9c_G ! +--------------1 ------RG---- ! +----6 +8jla_C ! ! ! ------RG---- ! ! +--------------8ox0_C ! +-8 ------RA---- ! ! ! +1zla_C -12 ! ! +-------------3 ------RA--RA ! ! ! ! +6a5l_g ! +--9 +----7 ------RT---- ! ! ! ! +8u14_G ! ! ! +--------------2 ------RG---- ! ! ! +5x0y_G ! +-10 ! ------RT---- ! ! ! +---------------------8grq_A ! ! ! ------RG---- ! ! ! +-----------8txv_G +---11 +------------5 --LC--RT---- ! +-----------8hr1_E ! ------RA---- ! +--7xsx_a +---------------------4 --------RA-- +--6g0l_D |
> 8ik5_C:TRANSCRIPTION FACTOR LMX1A HOMEOBOX DOMAIN IN COMPLEX WITH WNT1 PROMOTER
RART------------VTKGNA------KA L +-----------------------------2lkx_A ! --RT----------QTVAQTNA-------- L ! +8osb_E +-4 +--------------1 --RT------------IAQCNA----MG-- L ! ! +----2 +1b72_A ! ! ! ! ----------------NCICNARGRG---- L --5 +--------3 +---------------4xrm_B ! ! --RC------------IAQCNA----YC-- L ! +--------------------3rkq_B ! ----AALAITHTKT---------------- +-----------------------------2ofi_A |
> 8ity_O:HUMAN RNA POLYMERASE III PRE-INITIATION COMPLEX CLOSED DNA 1
TTKATTQTTGLTRTKAFTYT---------------- L +-----------------------------2p7c_B +-1 ----------YG------------------------ +-2 +-----------------------------3eyi_B ! ! ----------------------RGSTRTSTHG--RA L --3 +-----------------------------3zpl_B ! --------------------DCLT--AGTTRGRGRA L +-----------------------------5h3r_A |
> 8j91_C:CRYO-EM STRUCTURE OF NUCLEOSOME CONTAINING ARABIDOPSIS THALIANA HISTONES
----RA----RA +-----------------------------6a5l_g +-19 ----RG------ ! +-----------------------------5x0y_G ! ----RA------ ! +1zla_C ! +---------------------3 ----RG------ ! ! +8jla_C ! +-8 ----RC------ ! ! ! +7on1_c ! ! +----------------------1 ----RG------ ! ! +8ox0_C ! ! ----RT------ ! +-10 +----------7kbd_C ! ! ! +------------5 ------RA---- ! ! ! ! +----------6g0l_D ! ! ! ! ----RC------ ! ! ! ! +7xyf_B ! ! +-9 +--2 --------KG-- ! ! ! +--------4 +7nkx_f -20 +-11 ! ! ! LA--RG------ ! ! ! ! +----6 +---7unc_a ! ! ! ! ! ! ----RT------ ! ! ! +-----7 +------------8grq_A ! +-12 ! ! LC--RT------ ! ! ! ! +-----------------8hr1_E ! ! ! ! IT---------- ! +-13 ! +---------------------------3wkj_D ! ! ! ! LT--RC------ ! ! ! +---------------------------3kwq_E ! +-14 ! ----RG------ ! ! ! +---------------------------6iy2_A ! +-15 ! --KT-------- L ! ! ! +---------------------------7cvo_A ! +-16 ! ----RG------ ! ! ! +---------------------------7ccr_A ! +-17 ! LT--RC------ ! ! ! +---------------------------4xzq_E +-18 ! ----RT------ ! +----------------------------7zs9_e ! ----RG------ +----------------------------7y7i_E |
> 8j9v_A:CRYO-EM STRUCTURE OF THE AFRICAN SWINE FEVER VIRUS TOPOISOMERASE 2 COMPLEXED WITH CUT02ADNA AND ETOPOSIDE (EDI-1)
KA--SA------------RGIG------------------------------ +-----------------------------2xcr_U +-1 --RCST--------------IA------------------------------ +-2 +-----------------------------3ksb_B ! ! ----------------------DGICLGWGQGKTLTKGFGFG---------- L +-3 +-----------------------------4y0f_A ! ! ------------------------------------------NTATATSTRG L --4 +-----------------------------1dh3_C ! ------NASTRGHTSTLT---------------------------------- L +-----------------------------7cby_C |
> 8jcc_D:HUMAN HISTONE H2B VARIANT H2BFWT CRYO-EM STRUCTURE WITH 601 DNA SEQUENCE
------RA---- +-----------------------------6g0l_D +-18 IT---------- ! +-----------------------------3wkj_D ! ----RA------ ! +1zla_C ! +-------------4 ----RA----RA ! ! +6a5l_g ! +-------7 ----RT------ ! ! ! +7kbd_C ! +-12 +--------------1 ----RG------ -19 ! ! +8ox0_C ! +--14 ! ----RG------ ! ! ! +----------------------5x0y_G ! ! ! ----RG------ ! ! +-----------------------8jla_C ! ! --------KG-- ! ! +---7nkx_f ! ! +-----------5 ----RG------ ! ! ! +---7unc_a +-17 ! ----RT------ ! +----------9 +7zs9_e ! ! ! +--------------2 ----RT------ ! ! ! ! +8grq_A ! ! +-8 ----RG------ ! ! ! +7ccr_A ! ! +--------------3 ----RT------ ! ! +8hr1_E ! ! ----RC------ +-16 +---7xyf_B ! +------------6 ----RG------ ! +--10 +---6iy2_A ! ! ! ----RC------ ! +-11 +----------------3kwq_E ! ! ! --KT-------- L ! +-13 +--------------------7cvo_A ! ! ! ----RC------ +-15 +-----------------------4xzq_E ! ----RG------ +------------------------7y7i_E |
> 8jh2_e:RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH ELF1, SPT4/5 AND FOREIGN DNA, STALLED AT SHL(-1) OF THE NUCLEOSOME
--RG--------RG------ +-----------------------------6iy2_A ! --RG--------RT------ ! +7zs9_e ! +------------------------1 --RG--------RT------ ! ! +8grq_A ! ! --RT--RG------------ ! ! +---------6pww_K ! ! +-------8 ------------RG------ ! ! ! +---------5x0y_G ! ! ! ----------------KG-- ! ! +-12 +7nkx_f +-17 ! ! ! +--------------5 ------------RG------ ! ! ! ! ! ! +8jla_C ! ! +-15 ! ! ! ------------RC------ ! ! ! ! ! +-10 +--7xyf_B ! ! ! ! ! ! +-------6 ------------RT------ ! ! ! ! ! ! ! ! +7kbd_C ! ! ! ! +-13 ! ! +--2 ------------RG------ ! ! ! ! ! ! +----9 +8ox0_C ! ! ! ! ! ! ! ------------RA------ ! ! ! ! ! ! ! +1zla_C ! ! ! ! ! ! +---------4 ------------RA----RA ! ! ! ! ! ! +6a5l_g +-18 +-16 +-14 ! HGRGYG--QC--RG------ ! ! ! ! +-------------------7y7i_E ! ! ! ! --RT----LA--RG------ ! ! ! ! +---------7unc_a ! ! ! ! +------7 --------------RA---- ! ! ! ! ! +---------6g0l_D ! ! ! +---11 --RCYA------RG------ -19 ! ! ! +7ccr_A ! ! ! +----------------3 --RG----LC--RT------ ! ! ! +8hr1_E ! ! ! ----------IT-------- ! ! +---------------------------3wkj_D ! ! HARA----LT--RC------ ! +-----------------------------3kwq_E ! HARAYT--LT--RC------ +-----------------------------4xzq_E |
> 8jhf_A:NATIVE SUV420H1 BOUND TO 167-BP NUCLEOSOME
--RT---- +-----------------------------8grq_A +-5 LCRT---- +-6 +-----------------------------8hr1_E ! ! ----RA-- +-7 +-----------------------------6g0l_D ! ! --RG---- +-8 +-----------------------------8jla_C ! ! --RG---- ! +-----------------------------5x0y_G ! --RT---- --9 +8u14_G ! +--------------1 --RG---- ! ! +8ox0_C ! +-3 --RG---- ! ! ! +8txv_G +--------------4 +--------------2 --RA---- ! +1zla_C ! --RA--RA +--------------6a5l_g |
> 8jhg_C:NATIVE SUV420H1 BOUND TO 167-BP NUCLEOSOME
----RA------ +1zla_C +--------------3 ----RG------ +----7 +8ox0_C ! ! ----RA----RA +-----10 +---------------6a5l_g ! ! ----RG------ ! +--------------------5x0y_G ! ----RT------ ! +7kbd_C ! +-----------------------1 ----RG------ +-18 ! +8jla_C ! ! +-13 ----RG------ ! ! ! ! +7ccr_A ! ! ! ! +--------------2 ----RT------ ! ! ! +--------6 +8grq_A ! ! ! ! LC--RT------ ! +-15 +--------------8hr1_E ! ! --------KG-- ! ! +---7nkx_f ! ! +------------5 LA--RG------ ! +--------8 +---7unc_a ! ! ------RA---- ! +----------------6g0l_D -19 ----RC------ ! +---7xyf_B ! +------------4 IT---------- ! +----9 +---3wkj_D ! ! ! LT--RC------ ! +-11 +----------------3kwq_E ! ! ! ----RG------ ! +-12 +---------------------6iy2_A ! ! ! --KT-------- L ! +-14 +-----------------------7cvo_A ! ! ! LT--RC------ ! +-16 +------------------------4xzq_E ! ! ! ----RT------ +-17 +-------------------------7zs9_e ! ----RG------ +--------------------------7y7i_E |
> 8jla_C:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME LACKING N-TERMINAL REGION OF H2A, H2B, H3, AND H4
--RT +---------7jzv_N +-------------------2 --RC ! ! +---6qld_f +-3 +-----1 LC-- ! ! +---8bvw_e --4 ! --RT ! +-----------------------------8com_C ! --RT +-----------------------------7on1_e |
> 8kb5_A:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CONTAINING H3.8
RG----------RG------ +-----------------------------6iy2_A +-19 RA----LT----RC------ +-20 +-----------------------------3kwq_E ! ! RG----------RT------ ! +-----------------------------8grq_A ! RG----------RT------ ! +--------------7zs9_e ! +-----10 RCYA--------RG------ ! ! ! +7ccr_A ! ! +--------------1 RG----LC----RT------ ! ! +8hr1_E ! ! RT----LA----RG------ ! ! +--------------7unc_a ! ! ! ----------------KG-- ! ! +-9 +7nkx_f ! ! ! ! +------3 ------------RG------ +-21 ! ! ! ! +8jla_C ! ! ! ! +------7 ------------RA------ ! ! +--17 +-11 ! +1zla_C ! ! ! ! ! ! +-------2 ------------RG------ ! ! ! ! ! ! +8ox0_C ! ! ! ! ! ! ------EA------RG---- ! ! ! ! +-13 ! +--------7n8n_A ! ! ! ! ! ! +------8 ------------RA----RA ! ! ! ! ! ! +--------6a5l_g ! ! ! ! +-14 ! RT--RG-------------- ! ! ! ! ! ! +------------------6pww_K ! ! ! ! ! ! --------KT---------- L ! ! ! ! ! ! +-7cvo_A ! +--18 +-16 +----------------4 ------------RG------ +-22 ! ! +-5x0y_G ! ! ! ! RGYG--QC----RG------ ! ! ! ! +-------------------7y7i_E ! ! ! +-15 ------LT------------ ! ! ! ! +-----7ywx_E ! ! ! +-------------6 --------------RA---- ! ! ! +-----6g0l_D ! ! ! ------------RC------ +-23 ! ! +--7xyf_B ! ! ! ! +-------------5 ------------RT------ ! ! ! +-------12 +--7kbd_C ! ! ! ! ----------IT-------- ! ! ! +----------------3wkj_D -24 ! ! RAYT--LT----RC------ ! ! +-----------------------------4xzq_E ! ! RG------------------ ! +-----------------------------5z3u_A ! ------------RG------ +-----------------------------3w99_F |
> 8kcb_A:COMPLEX OF DDM1-NUCLEOSOME(H2A) COMPLEX WITH DDM1 BOUND TO SHL2
------RG------ +-----------------------------5x0y_G +-17 ------RG------ ! +-----------------------------8jla_C ! ------RA------ ! +1zla_C ! +----------------------3 ------RG------ ! ! +8ox0_C ! +-9 ------RT------ ! ! ! +7kbd_C ! ! +----------------------1 ------RA----RA ! +--10 +6a5l_g +-18 ! ! ----KT-------- L ! ! ! ! +----7cvo_A ! ! ! +-------------------7 --------RA---- ! ! ! +----6g0l_D ! ! ! ------RC------ ! ! ! +7xyf_B ! ! ! +---4 ----------KG-- ! ! ! ! +7nkx_f ! ! ! +-----------6 LA----RG------ ! ! ! ! ! +7unc_a ! +-16 ! +----2 ------RT------ ! ! +--------8 +8grq_A ! ! ! ! ------RT------ -19 ! ! ! +7zs9_e ! ! +-11 +---------------5 LC----RT------ ! ! ! ! +8hr1_E ! ! +-12 ! --LT--RC------ ! ! ! ! +-------------------------3kwq_E ! ! +-13 ! ------RG------ ! ! ! ! +-------------------------6iy2_A ! ! +-14 ! LT----RC------ ! ! ! ! +--------------------------4xzq_E ! +-15 ! ------RG------ ! ! +--------------------------7ccr_A ! ! ------RG------ ! +---------------------------7y7i_E ! --IT---------- +-----------------------------3wkj_D |
> 8kcb_D:COMPLEX OF DDM1-NUCLEOSOME(H2A) COMPLEX WITH DDM1 BOUND TO SHL2
IT---------- +-----------------------------3wkj_D +-14 ------RA---- +-15 +-----------------------------6g0l_D ! ! ----RG------ +-16 +-----------------------------5x0y_G ! ! ----RG------ +-17 +-----------------------------8jla_C ! ! ----RA----RA +-18 +-----------------------------6a5l_g ! ! ----RG------ ! +-----------------------------8ox0_C ! ----RA------ ! +------------------------1zla_C ! ! ----RC------ ! ! +7xyf_B ! ! +---3 --------KG-- ! ! ! +7nkx_f ! +-7 +-------4 ----RG------ ! ! ! ! ! +7unc_a ! ! ! ! +---2 ----RT------ ! ! ! +--5 +8hr1_E -19 ! ! ! ! ----RG------ ! +-8 ! ! ! +7ccr_A ! ! ! +--------6 +------------1 ----RT------ ! ! ! ! +8grq_A ! ! ! ! ----RT------ ! +-9 ! +---------------7zs9_e ! ! ! ! ----RT------ ! ! ! +------------------------7kbd_C ! +-10 ! ----RC------ ! ! ! +--------------------------3kwq_E ! +-11 ! ----RG------ ! ! ! +--------------------------6iy2_A ! +-12 ! --KT-------- L ! ! ! +---------------------------7cvo_A +-13 ! ----RC------ ! +---------------------------4xzq_E ! ----RG------ +---------------------------7y7i_E |
> 8oja_A:HSV-1 DNA POLYMERASE-PROCESSIVITY FACTOR COMPLEX IN EXONUCLEASE STATE
------IT----------------------------------QGQAVT--FT--IGNGSGYGFT--VAKTLTKARG-- L +------------3iay_A +----------1 ------------------------------DG--FA----FG------------------------WC----KT---- ! +------------2dtu_A +-----3 PIPIVIIIPGFIKGRINTNTFCQGMGDAYT--RG--WGDG--------WG---------------------------- L ! ! +---------------------2xhb_A --4 +-2 --------------------------RT--------------RC----------LC--SCYG--FAYA--------RG L ! +---------------------8g9l_A ! ----------------------------------------------------RC------------------------ +-----------------------------8wpe_G |
> 8osb_E:TWIST1-TCF4-ALX4 COMPLEX ON SPECIFIC DNA
RT--VTKGNA--KA-- L +-----------------------------2lkx_A ! RTQTVAQTNA------ L ! +8osb_E ! +--------------1 ----NCICNARGRG-- L --5 +----2 +4xrm_B ! ! ! RT--IAQCNAMG---- L ! +--3 +---------------1b72_A ! ! ! RC--IAQCNAYC---- L +-----4 +--------------------3rkq_B ! ----VTCCNAQA--RT L +-----------------------8g87_X |
> 8ox0_C:STRUCTURE OF APO TELOMERIC NUCLEOSOME
--RT +---------7jzv_N +-------------------2 --RC ! ! +---6qld_f +-3 +-----1 LC-- ! ! +---8bvw_e --4 ! --RT ! +-----------------------------8com_C ! --RT +-----------------------------7on1_e |
> 8pmf_A:TRANSCRIPTION FACTOR BARHL2 BOUND TO DNA SEQUENCES
--RT--IAQCNA----MG---- L +-----------------------------1b72_A +-4 RART--VTKGNA------KA-- L ! +-----------------------------2lkx_A ! --RTQTVAQTNA---------- L +-5 +8osb_E ! ! +---------------1 ------NCICNARGRG------ L ! ! +----2 +4xrm_B ! ! ! ! --RC--IAQCNA----YC---- L --6 +-------3 +----------------3rkq_B ! ! ------VTCCNA----QA--RT L ! +---------------------8g87_X ! ----------------YCFAKC L +-----------------------------6pe2_B |
> 8po8_A:STRUCTURE OF ESCHERICHIA COLI HRPA IN COMPLEX WITH ADP AND OLIGONUCLEOTIDE POLY(DC)11 FORMING AN I-MOTIF
ICKC---------------- +-----------------------------7aud_E +-1 ----RTQTVAQTNA------ L +-2 +-----------------------------8osb_E ! ! ----RTKTIAQCNA----RT L --3 +-----------------------------1ig7_A ! ----RT--VTQTNAMTKTRT L +-----------------------------1jgg_B |
> 8pw0_A:MANGANESE-DEPENDENT TRANSCRIPTIONAL REPRESSOR DR2539 COMPLEXED WITH MANGANESE AND BOUND TO DR1709 PROMOTOR
--------RGSTRTSTHG------RA------ L +-----------------------------3zpl_B +-1 ------DCLT--AGTTRG--RG--RA------ L +-2 +-----------------------------5h3r_A ! ! --TT------KATTQTTGLTRTKA----FTYT L +-3 +-----------------------------2p7c_B ! ! ------SG--PTPGTT----------HG---- L +-4 +-----------------------------7d98_Q ! ! RT--LANTHGTTETYTRG-------------- L --5 +-----------------------------1f4k_B ! ------------------YG------------ +-----------------------------3eyi_B |
> 8q72_D:E. COLI PLASMID-BORNE JETABCD(E248A) CORE IN A CLEAVAGE-COMPETENT STATE
TT----KATTQTTG------LTRT----KAFTYT L +-----------------------------2p7c_B +-1 --KTHG---------------------------- +-2 +-----------------------------5hdn_C ! ! --------------------YG------------ --3 +-----------------------------3eyi_B ! --------------NASTRGHT--STLT------ L +-----------------------------7cby_C |
> 8r3g_D:CENTRAL GLYCOLYTIC GENES REGULATOR (CGGR) BOUND TO DNA OPERATOR
--DCLT--AG--TTRG--RG-------- L +-----------------------------5h3r_A +-1 ----RGSTRT--STHG------------ L +-2 +-----------------------------3zpl_B ! ! TT----KATT--QTTGLTRTKA--FTYT L +-3 +-----------------------------2p7c_B ! ! ----------------YG---------- --4 +-----------------------------3eyi_B ! ----PTPG--TT----------HG---- L +-----------------------------7d98_Q |
> 8rbx_M:STRUCTURE OF INTEGRATOR-PP2A BOUND TO A PAUSED RNA POLYMERASE II-DSIF- NELF-NUCLEOSOME COMPLEX
------RT------ +7zs9_e +--------------1 ------RT------ ! +8grq_A +-8 ------RG------ ! ! +7ccr_A ! +--------------2 LC----RT------ +---10 +8hr1_E ! ! LA----RG------ ! ! +---------7unc_a ! +------6 --------RA---- ! +---------6g0l_D ! QC----RG------ ! +---------7y7i_E +----13 +--------7 ------RG------ ! ! ! +---------5x0y_G ! ! ! ----------KG-- ! ! +-11 +7nkx_f ! ! ! ! +-3 ------RA------ ! ! ! ! +--------------4 +1zla_C ! ! ! ! ! ! ------RG------ +-14 ! ! +--9 +8jla_C ! ! +-12 ! ------RC------ ! ! ! ! +--7xyf_B ! ! ! +------------5 ------RG------ ! ! ! +--8ox0_C +-15 ! ! ------RA----RA ! ! ! +-------------------6a5l_g ! ! ! ------RT------ +-16 ! +---------------------------7kbd_C ! ! ! --IT---------- ! ! +---------------------------3wkj_D +-17 ! ----KT-------- L ! ! +---------------------------7cvo_A +-18 ! LT----RC------ ! ! +-----------------------------3kwq_E -19 ! ------RG------ ! +-----------------------------6iy2_A ! LT----RC------ +-----------------------------4xzq_E |
> 8siy_G:ORIGIN RECOGNITION COMPLEX ASSOCIATED (ORCA) PROTEIN BOUND TO H4K20ME3-NUCLEOSOME
RG-------- +8jh2_e +--------------3 RG--RT---- +-------7 +8grq_A ! ! RGLCRT---- +-10 +---------------8hr1_E ! ! ----RG---- +-11 +-----------------------8jla_C ! ! ----RG---- ! +------------------------8ox0_C ! ----RA---- ! +--7xsx_a -12 +--------5 ------RA-- ! ! +--6g0l_D ! +----------6 ----RA---- ! ! ! +1zla_C ! ! +----------4 ----RG---- +---9 +5x0y_G ! ----RT---- ! +-------------------8u14_G ! ! ----RG---- +--8 +7e9c_G ! +-1 ----RG---- +-------------------2 +8txv_G ! ----RA--RA +6a5l_g |
> 8smw_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE IN COMPLEX WITH RNF168 AND UBCH5C~UB (UBCH5C CHEMICALLY CONJUGATED TO HISTONE H2A. NO DENSITY FOR UB.) (CLASS 1)
------RG------ +-----------------------------8ox0_C +-19 ------RG------ ! +-----------------------------5x0y_G ! ------RA------ ! +1zla_C ! +---------------------3 ------RA----RA ! ! +6a5l_g ! +---12 KG----RT------ ! ! ! +7kbd_C ! ! +----------------------1 ------RG------ ! ! +8jla_C ! ! ------RC------ ! ! +---------7on1_c ! ! +-------7 --LC--RT------ ! ! ! +---------8hr1_E ! +-15 ! ----------KG-- ! ! ! +-----10 +---7nkx_f ! ! ! ! ! +-----------5 --LA--RG------ +-20 ! ! ! ! ! +---7unc_a ! ! ! ! ! +-8 ------RG------ ! ! ! ! ! ! +7ccr_A ! ! ! ! ! +---------------2 ------RT------ ! ! ! ! ! +8grq_A ! ! ! +-14 ------RC------ ! ! ! ! +---7xyf_B ! ! +-16 ! +------------4 --IT---------- ! ! ! ! ! +---9 +---3wkj_D ! ! ! ! ! ! ! --LT--RC------ ! ! ! ! ! +-11 +----------------3kwq_E ! ! ! ! ! ! ! ------RG------ -21 ! ! ! +-13 +--------------------6iy2_A ! ! +-17 ! ! ----KT-------- L ! ! ! ! ! ! +----7cvo_A ! ! ! ! ! +------------------6 --------RA---- ! ! ! ! ! +----6g0l_D ! +-18 ! ! --LT--RC------ ! ! ! +---------------------------4xzq_E ! ! ! ------RT------ ! ! +----------------------------7zs9_e ! ! ------RG------ ! +----------------------------7y7i_E ! ------RT------ +-----------------------------5z23_C |
> 8sro_B:FOXP3 TETRAMER ON TTTG REPEATS
--------NAST--RGHT--STLT------ L +------7cby_C +-----------1 --ST----NAST--RTHT--ST-------- L +---2 +------3l2c_A ! ! ------RTSTHG--------------RA-- L +--3 +------------------3zpl_B ! ! TT--KATTQTTG----LTRT----KAFTYT L +---4 +----------------------2p7c_B ! ! ------KT--RGAT--RGNT---------- L --5 +-------------------------8smh_F ! ----TG--RGRG--YC-------------- L +-----------------------------4yo2_A |
> 8svd_T:STRUCTURE OF M. BAIXIANGNINGIAE DARR-DNA COMPLEX REVEALS NOVEL DIMER- OF-DIMERS DNA BINDING
----TTKA--YGYG L +8sva_T +-----------------1 ----TTKA--YGYA L +------2 +8svd_T ! ! VT--AGDTTTYTLA L --3 +-----------------5gpc_B ! VTRG----QTHTHT L +------------------------5vl9_A |
> 8sxt_A:STRUCTURE OF LINE-1 ORF2P WITH TEMPLATE:PRIMER HYBRID
FGFG------ +-----------------8sxt_A +------2 FCYA------ ! +-----------------6ar1_A --3 ------RTPT L ! +8gh6_A +------------------------1 --YANA---- L +8oz7_A |
> 8txv_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE UBIQUITYLATED AT HISTONE H2A K15 IN COMPLEX WITH RNF168 (CLASS 1)
------RG------ +-----------------------------5x0y_G ! ------RA------ ! +1zla_C ! +--------------2 ------RG------ ! +----8 +8ox0_C ! ! ! ------RA----RA ! +-------11 +--------------6a5l_g ! ! ! ------RG------ +-20 ! +-------------------8jla_C ! ! ! KG----RT------ ! ! ! +----------------------7kbd_C ! ! ! ! ------RC------ ! ! ! ! +---------7on1_c ! ! ! ! +-------6 --LA--RG------ ! ! ! ! ! ! +7unc_a ! ! ! +--14 ! +--------3 ------RT------ ! +-19 ! ! +-10 +8hr1_E ! ! ! ! ! ! ----------KG-- ! ! ! ! ! ! +---7nkx_f ! ! ! ! ! +-------------5 --------RA---- ! ! ! +-12 +---6g0l_D ! ! ! ! ------RG------ ! ! ! ! +7ccr_A ! ! ! ! +--------------1 ------RT------ ! ! ! +-----7 +8grq_A -21 ! ! ! ------RT------ ! +-18 +--------------7zs9_e ! ! ------RC------ ! ! +---7xyf_B ! ! +------------4 --IT---------- ! ! +---9 +---3wkj_D ! ! ! ! ----KT-------- L ! ! +-13 +----------------7cvo_A ! ! ! ! --LT--RC------ ! ! +-15 +--------------------3kwq_E ! ! ! ! ------RG------ ! ! +-16 +-----------------------6iy2_A ! ! ! ! --LT--RC------ ! +-17 +------------------------4xzq_E ! ! ------RG------ ! +-------------------------7y7i_E ! ------RT------ +-----------------------------5z23_C |
> 8u13_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE UBIQUITYLATED AT HISTONE H2A LYSINE 15 IN COMPLEX WITH RNF168-UBCH5C (CLASS 1)
------RA------ +1zla_C +--------------2 ------RG------ +----7 +8ox0_C ! ! ------RA----RA +-10 +--------------6a5l_g ! ! ------RG------ +----13 +-------------------5x0y_G ! ! ------RG------ ! +----------------------8jla_C ! KG----RT------ ! +--------------------7kbd_C ! ! ------RC------ ! +-11 +---------7on1_c ! ! ! +-------6 --LC--RT------ ! ! ! ! +---------8hr1_E ! ! +--9 ------RG------ ! +-14 ! +7ccr_A +-20 ! ! +-----------------1 ------RT------ ! ! ! ! +8grq_A ! ! ! ! ----------KG-- ! ! +--15 ! +---7nkx_f ! ! ! ! +------------------4 --LA--RG------ ! ! ! ! +---7unc_a ! ! ! ! ----KT-------- L ! ! ! ! +----7cvo_A ! ! ! +------------------5 --------RA---- ! ! ! +----6g0l_D ! ! ! ------RC------ ! ! ! +---7xyf_B -21 +-19 +------------3 --IT---------- ! ! +---8 +---3wkj_D ! ! ! ! --LT--RC------ ! ! +-12 +----------------3kwq_E ! ! ! ! ------RG------ ! ! +-16 +--------------------6iy2_A ! ! ! ! --LT--RC------ ! ! +-17 +-----------------------4xzq_E ! ! ! ! ------RT------ ! +-18 +------------------------7zs9_e ! ! ------RG------ ! +-------------------------7y7i_E ! ------RT------ +-----------------------------5z23_C |
> 8u14_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE UBIQUITYLATED AT HISTONE H2A LYSINE 15 IN COMPLEX WITH RNF168-UBCH5C (CLASS 2)
------RG------ +-----------------------------5x0y_G +-19 ------RG------ ! +-----------------------------8ox0_C ! ------RA------ ! +1zla_C ! +---------------------3 ------RA----RA ! ! +6a5l_g ! +-11 KG----RT------ ! ! ! +7kbd_C ! ! +----------------------1 ------RG------ ! ! +8jla_C ! ! ------RC------ ! ! +---------7on1_c +-20 +-16 +---7 --LC--RT------ ! ! ! ! ! +---------8hr1_E ! ! ! ! +--------8 ----------KG-- ! ! ! ! ! ! +---7nkx_f ! ! ! ! ! +---------5 --LA--RG------ ! ! ! ! ! ! +7unc_a ! ! ! +-12 +---2 ------RT------ ! ! ! ! +8grq_A ! ! ! ! ----KT-------- L ! ! ! ! +----7cvo_A ! ! ! +-----------------6 --------RA---- ! ! ! +----6g0l_D ! +-18 ------RC------ ! ! +---7xyf_B -21 ! +------------4 --IT---------- ! ! +---9 +---3wkj_D ! ! ! ! --LT--RC------ ! ! +-10 +----------------3kwq_E ! ! ! ! ------RG------ ! ! +-13 +--------------------6iy2_A ! ! ! ! ------RG------ ! ! +-14 +-----------------------7ccr_A ! ! ! ! --LT--RC------ ! ! +-15 +------------------------4xzq_E ! ! ! ! ------RT------ ! +-17 +-------------------------7zs9_e ! ! ------RG------ ! +--------------------------7y7i_E ! ------RT------ +-----------------------------5z23_C |
> 8u3b_G:CRYO-EM STRUCTURE OF E. COLI NARL-TRANSCRIPTION ACTIVATION COMPLEX AT 3.2A
TT--KATT--QTTG--LTRTYT L +-----------------------------2p7c_B +-1 ----------------YG---- +-2 +-----------------------------3eyi_B ! ! --SGPTPG--TT---------- L --3 +-----------------------------7d98_Q ! ----RGSTRT--STHG------ L +-----------------------------3zpl_B |
> 8uvk_B:COSR DNA BOUND FORM II
--RG--DTVTSTRG------WT---- L +-----------------------------6lxn_A +-1 --RG--DTVTST--RG----RC---- L +-2 +-----------------------------4nhj_A ! ! ----------YG-------------- +-3 +-----------------------------3eyi_B ! ! TTKATTQTTG----LTRTKA--FTYT L --4 +-----------------------------2p7c_B ! --------VTKGNAKA---------- L +-----------------------------2lkx_A |
> 8v6v_X:CRYO-EM STRUCTURE OF DOUBLY-BOUND SNF2H-NUCLEOSOME COMPLEX
----------RC-- +-----------------------------6ryu_V ! ------NG--RC-- --3 +--8wha_K ! +---------------------1 EG------SCRG-- L +----2 +--6kw4_Y ! ETNGRG----ICKC +------------------------7aud_E |
> 8vfz_O:CRYO-EM STRUCTURE OF FOXA1 IN COMPLEX WITH ALBN1 NUCLEOSOME (CLASS 2)
----------------NAST--RGHT--STLT---- L +------7cby_C +-----------1 ------ST--------NAST--RTHT--ST------ L +---2 +------3l2c_A ! ! RT--LA--NTHGTTETYTRG---------------- L +-3 +------------------1f4k_B ! ! ----------RGSTRTSTHG--------------RA L +-4 +----------------------3zpl_B ! ! --TT--------KATTQTTG----LTRT----KA-- L --5 +------------------------2p7c_B ! --------------KT--RGAT--RGNT-------- L +--------------------------8smh_F |
> 8wg5_E:CRYO-EM STRUCTURE OF USP16 BOUND TO H2AK119UB NUCLEOSOME
--RG--------RT------ +-----------------------------8grq_A +-16 HARA----LT--RC------ +-17 +-----------------------------3kwq_E ! ! --RG--------RG------ ! +-----------------------------6iy2_A ! --RT----LA--RG------ ! +7unc_a ! +-------------2 --RG----LC--RT------ ! +------9 +8hr1_E ! ! ! --RT--RG------------ ! ! +--------------6pww_K ! ! --RG--------RT------ ! ! +---------7zs9_e ! ! +---7 ------------RG------ +-18 ! ! +---------5x0y_G ! ! ! +----8 ----------------KG-- ! ! ! ! ! +7nkx_f ! ! +----14 ! ! +-3 ------------RA------ ! ! ! ! +-11 +------------4 +1zla_C ! ! ! ! ! ! ! ------------RG------ ! ! ! ! ! ! +8jla_C ! ! ! ! +-12 ! HGRGYG--QC--RG------ ! ! ! ! ! ! +------------------7y7i_E ! ! ! ! ! ! --RCYA------RG------ ! ! ! ! ! ! +--------7ccr_A ! ! ! ! ! +---------6 --------------RA---- -19 +-15 +-13 +--------6g0l_D ! ! ! ------------RC------ ! ! ! +--7xyf_B ! ! ! +-------------5 ------------RG------ ! ! ! ! +--8ox0_C ! ! +-10 ------------RT------ ! ! ! +7kbd_C ! ! +----------------1 ------------RA----RA ! ! +6a5l_g ! ! ----------IT-------- ! +---------------------------3wkj_D ! HARAYT--LT--RC------ +-----------------------------4xzq_E |
> 8wha_K:STRUCTURE OF DDM1-NUCLEOSOME COMPLEX IN THE ADP-BEFX STATE WITH DDM1 BOUND TO SHL2 AND SHL-2
--NG--RC-- +-8wha_K +-------------1 ------RC-- +---------2 +-6ryu_V ! ! EG--SCRG-- L --3 +---------------6kw4_Y ! ------ICKC +-------------------------7aud_E |
> 8xas_E:CRYSTAL STRUCTURE OF ATARR1-DBD IN COMPLEX WITH A DNA FRAGMENT
RT--QTVAQTNA------ L +8osb_E +---------------1 ------VTKGNA--KA-- L +---2 +2lkx_A ! ! RT----IAQCNAMG---- L +---3 +---------------1b72_A ! ! ------NCRG-------- L +-4 +-------------------4xrm_B ! ! RC----IAQCNAYC---- L +----5 +-----------------------3rkq_B ! ! ------VTCCNAQA--RT L +-6 +------------------------8g87_X ! ! --NG--NA---------- L --7 +-----------------------------2kdz_A ! --RGDTVTSTRG------ L +-----------------------------6lxn_A |
> 8ybk_E:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CONTAINING THE H3.1 E97K MUTANT
LT----RC------ +-----------------------------3kwq_E +-16 ------RG------ ! +-----------------------------6iy2_A ! ------RT------ ! +7zs9_e ! +--------------1 ------RT------ ! ! +8grq_A ! +----10 ------RG------ ! ! ! +7ccr_A ! ! +--------------3 LC----RT------ ! ! +8hr1_E +-17 ! LA----RG------ ! ! +-14 +---------7unc_a ! ! ! ! +--7 ------RA------ ! ! ! ! ! ! +1zla_C ! ! ! ! +----9 +---------4 ------RG------ ! ! ! ! ! ! +8ox0_C ! ! ! ! ! ! ------RA----RA ! ! ! +-12 +------------6a5l_g ! ! ! ! QC----RG------ ! ! ! ! +---------7y7i_E ! +----15 +-------8 --------RA---- ! ! +---------6g0l_D +-18 ! ----------KG-- ! ! ! +7nkx_f ! ! ! +-------------5 ------RG------ ! ! ! ! +8jla_C ! ! ! +---11 ------RT------ ! ! ! ! ! +7kbd_C ! ! ! ! +--------------2 ------RG------ -19 ! +--13 +5x0y_G ! ! ! ------RC------ ! ! ! +---7xyf_B ! ! +---------------6 ----KT-------- L ! ! +---7cvo_A ! ! LT----RC------ ! +-----------------------------4xzq_E ! --IT---------- +-----------------------------3wkj_D |
> 9b8u_A:CRYSTAL STRUCTURE OF CRX-RET4 OLIGONUCLEOTIDE COMPLEX
RTQTVAQTNA-------- L +8osb_E +---------------1 RT--VTKGNA----KA-- L +---2 +2lkx_A ! ! RT--IAQCNA--MG---- L +---3 +---------------1b72_A ! ! ----NCICRGRG------ L +-4 +-------------------4xrm_B ! ! RC--IAQCNA--YC---- L +----5 +-----------------------3rkq_B ! ! ----VTCCNA--QA--RT L +-6 +------------------------8g87_X ! ! ------------YCFAKC L --7 +-----------------------------6pe2_B ! RT----YTNC----NAKG L +-----------------------------8pi8_B |
> 9c4c_G:THE STRUCTURE OF TWO MNTR DIMERS BOUND TO THE NATIVE MNEP PROMOTER SEQUENCE
--TT------KATTQTTGLTRTKA--FTYT L +-----------------------------2p7c_B +-1 ------------------YG---------- +-2 +-----------------------------3eyi_B ! ! RT--LANTHGTTETYTRG------------ L --3 +-----------------------------1f4k_B ! ------SG--PTPGTT--------HG---- L +-----------------------------7d98_Q |
> 9ezz_A:BACTERIAL HISTONE PROTEIN HBB FROM BDELLOVIBRIO BACTERIOVORUS BOUND TO DNA
--------KG-- +7nkx_f +---------5 ----RG------ ! +8jla_C +-9 --KT-------- L ! ! +-7cvo_A ! +--------6 ----RA------ +-----10 ! +1zla_C ! ! +-4 ----RG------ ! ! +8ox0_C ! ! ----RA----RA +-13 +------------6a5l_g ! ! ----RT------ ! ! +7zs9_e ! ! +--------------1 ----RT------ ! ! ! +8grq_A ! +---12 ----RG------ ! ! +7ccr_A +-----14 +-------------3 LC--RT------ ! ! +8hr1_E ! ! ----RC------ ! ! +---7xyf_B ! ! +----------7 ----RT------ ! ! ! ! +7kbd_C +-15 ! ! +---2 ----RG------ ! ! +----11 +5x0y_G ! ! ! LA--RG------ ! ! ! +---------7unc_a +-16 ! +----8 ------RA---- ! ! ! +---------6g0l_D ! ! ! IT---------- +-17 ! +---------------------------3wkj_D ! ! ! ----RG------ ! ! +----------------------------6iy2_A +-18 ! LT--RC------ ! ! +----------------------------3kwq_E -19 ! LT--RC------ ! +----------------------------4xzq_E ! QC--RG------ +----------------------------7y7i_E |
> 9fgq_D:STRUCTURE OF HUMAN APC3LOOP 375-381 BOUND TO THE NCP
--------RA---- +-----------------------------6g0l_D +-17 --IT---------- +-18 +-----------------------------3wkj_D ! ! ------RG------ ! +-----------------------------5x0y_G ! ------RA------ ! +1zla_C ! +---------------2 ------RG------ ! +----------7 +8ox0_C ! ! ! ------RG------ ! ! +---------------8jla_C ! ! ----------KG-- ! ! +-7nkx_f ! ! +-------------------4 ------RA----RA -19 +-15 ! +-6a5l_g ! ! ! ! LA----RG------ ! ! ! +-11 +7unc_a ! ! ! ! ! +--------------1 ------RT------ ! ! ! ! ! +----6 +8grq_A ! ! ! ! ! ! ! ------RT------ ! ! ! ! +-9 +--------------7zs9_e ! ! +-13 ! ------RG------ ! ! ! ! +7ccr_A ! ! ! +-------------------3 LC----RT------ ! ! ! +8hr1_E +-16 ! ------RT------ ! +------------------------7kbd_C ! ------RC------ ! +---7xyf_B ! +------------5 LT----RC------ ! +---8 +---3kwq_E ! ! ! ------RG------ ! +-10 +----------------6iy2_A ! ! ! ----KT-------- L ! +-12 +--------------------7cvo_A ! ! ! LT----RC------ +-14 +-----------------------4xzq_E ! QC----RG------ +------------------------7y7i_E |
> 9foy_A:TERNARY COMPLEX OF A MYCOBACTERIUM TUBERCULOSIS DNA GYRASE CORE FUSION WITH DNA AND THE INHIBITOR AMK32B
--KA------SA------------RGIG---------- +-----------------------------2xcr_U +-1 ----RC----ST--------------IA---------- +-2 +-----------------------------3ksb_B ! ! KTKT---------------------------------- +-3 +-----------------------------7z9c_D ! ! ------------NASTRG--STLT-------------- L +-4 +-----------------------------7cby_C ! ! ------DCAG--TTRG--RG----RA------------ L --5 +-----------------------------5h3r_A ! ----------------------------NTATATSTRG L +-----------------------------1dh3_C |