(updated: Sun Jan 11 02:33:02 2026)
In these diagrams sets of entries from the database are clustered to show their interface (left) and overall structural (right) similarity. Mouse over complex names to check their SCOP superfamilies and click on the L links to see their structure-based sequence logos. Please check the help page for more details.
> 1a6y_A:REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX
--EAKG--KTRG-- L +-----------------------------4umm_A ! CAECKG--KGRG-- L ! +----1cit_A --5 +------------2 ----KGVT--RGRC L ! +-------3 +----2c7a_B ! ! ! --ECKGAG--RG-- L +---4 +-----------------4ond_A ! --ECKGAGKGRG-- L ! +1hcq_E +------------------------1 --ECKGAGKTRG-- L +4aa6_B |
> 1b72_A:PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEX
--RT----IAQCNA----MG---- L +---1b72_A ! --RT--QTVAQTNA---------- L +-----5 +8osb_E ! ! +-1 RART----VTKGNA------KA-- L ! +---2 +2lkx_A +-6 ! --RA----IAQTNA---------- L ! ! +5ego_B ! ! --RC----IAQCNA----YC---- L ! ! +-3rkq_B +--------------7 +-------4 --RT----NT--NA----IARG-- L ! ! +-1b72_B ! ! --------NCIC--RGRG------ L --8 ! +4xrm_B ! +-----------3 ----RT--NT--NA----IARG-- L ! +4cyc_B ! ------------------YCFAKC L +--------------------------6pe2_B |
> 1bc8_C:STRUCTURES OF SAP-1 BOUND TO DNA SEQUENCES FROM THE E74 AND C-FOS PROMOTERS PROVIDE INSIGHTS INTO HOW ETS PROTEINS DISCRIMINATE BETWEEN RELATED DNA TARGETS
------QCKT--RGAT--RGNT-------- L +-----------------------------8smh_F ! ------DCKT--RG----RGYA--KA---- L +-3 +5jvt_A ! ! +--------------------1 ------DCKT--RGST--RGYA-------- L ! +-------2 +4bnc_A +-4 ! ----------RGNT--RGSTATRA------ L ! ! +---------------------2o6g_G +-5 ! ------NCTTNA------VTNT-------- L ! ! +-----------------------------1pp7_U --6 ! TT----KATTQTTG----LTRT--KAFTYT L ! +-----------------------------2p7c_B ! --KTHG------------------------ +-----------------------------5hdn_C |
> 1bvo_A:DORSAL HOMOLOGUE GAMBIF1 BOUND TO DNA
RCRCYC--ECHC-- L +1svc_P +--------------1 RGRGYTCTECHG-- L +--------------2 +2o61_B ! ! RGRGYTCCECHTKT L --3 +--------------1nfk_A ! RGRGYTCCECHG-- L +-----------------------------1a3q_A |
> 1cf7_A:STRUCTURAL BASIS OF DNA RECOGNITION BY THE HETERODIMERIC CELL CYCLE TRANSCRIPTION FACTOR E2F-DP
------------NGSA--RGHGSC------------ L +6el8_A +-----------------1 ------------NAST--RGHTSTFT---------- L ! +1vtn_C +------3 --NTHG--RT--YTPT------------------RT L ! ! +----6qil_A +----4 +------------2 ------------NAST--RTHTSTLT---------- L ! ! +----4lg0_A +-5 ! --------------RC----YG------KT------ ! ! +------------------------2acj_B +-6 ! --------ST--TAQC-------------------- ! ! +-----------------------------8b4b_W +-7 ! ------HT----RTITYT------------------ L ! ! +-----------------------------4kfc_B +-8 ! ----RGTC--DCVA----RGRC--------RC---- L ! ! +-----------------------------8hih_Q --9 ! --STRGQTQA--ST------------HG----KT-- L ! +-----------------------------7t8k_B ! RA---------------------------------- L +-----------------------------8ac8_C |
> 1cit_A:DNA-BINDING MECHANISM OF THE MONOMERIC ORPHAN NUCLEAR RECEPTOR NGFI-B
CAECKG--KGRG--RTRT L +---1cit_A +------------1 --EAKG--KTRG------ L +----2 +---4umm_A ! ! ----KGVT--RG------ L +-3 +----------------2c7a_B ! ! --ECKGAG--RG------ L --4 +---------------------4ond_A ! --ECKGAG--KTRG---- L +-----------------------4aa6_B |
> 1ddn_B:DIPHTHERIA TOX REPRESSOR (C102D MUTANT)/TOX DNA OPERATOR COMPLEX
----RGSTRTSTHG------------ L +3zpl_B +---------------1 ------------RCYG----KT---- +---2 +2acj_B ! ! --------------YG---------- +--3 +----------------3eyi_B ! ! --DCLT--AGTTRG--RG-------- L --4 +--------------------5h3r_A ! TT----KATTQTTGLTRTKA--FTYT L +-----------------------2p7c_B |
> 1dsz_A:STRUCTURE OF THE RXR/RAR DNA-BINDING DOMAIN HETERODIMER IN COMPLEX WITH THE RETINOIC ACID RESPONSE ELEMENT DR1
CAECKG--KGRG-- L +---1cit_A +-------------2 --EAKG--KTRG-- L +---3 +---4umm_A ! ! ----KGVT--RG-- L +----4 +-----------------2c7a_B ! ! --ECKGAG--RG-- L --5 +---------------------4ond_A ! --ECKGAGKGRG-- L ! +1hcq_E +-------------------------1 --ECKGAG--KTRG L +4aa6_B |
> 1dux_F:ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITION
QCKT--RGAT--RGNT------ L +-----------------------------8smh_F ! DCKT--RGST--RGYA------ L +-3 +4bnc_A ! ! +--------------------1 DCKT--RG----RGYA--KA-- L ! +-------2 +5jvt_A --4 ! ----RGNT--RGSTATRA---- L ! +---------------------2o6g_G ! ------RC----YG------KT +-----------------------------2acj_B |
> 1e3o_C:CRYSTAL STRUCTURE OF OCT-1 POU DIMER BOUND TO MORE
RA--IAQTNA---- L +-5ego_B +--------------1 RT--NT--NAIARG L +------------2 +-1b72_B ! ! --RTNT--NAIARG L --3 +----------------4cyc_B ! RT--VTQTNA--RG L +-----------------------------8ejp_B |
> 1emh_A:CRYSTAL STRUCTURE OF HUMAN URACIL-DNA GLYCOSYLASE BOUND TO UNCLEAVED SUBSTRATE-CONTAINING DNA
--------PTLA------ +1emh_A +---1 --------PALA------ +-------------------2 +4uqm_A ! ! KT----TT------RA-- L --3 +---4yig_E ! --SGKT--CGACQT--PG L +-----------------------5hf7_A |
> 1esg_A:RESTRICTION ENDONUCLEASE BAMHI BOUND TO A NON-SPECIFIC DNA.
------------------RT--SADA +------------1esg_A +------------1 ----SANTYAFG--STNTSAST---- L +-2 +------------1dfm_A ! ! --RC------RT-------------- L +-3 +-------------------------4dav_B ! ! AC------------------------ L --4 +--------------------------7edb_A ! ----RT------NG------------ +---------------------------6bow_A |
> 1f4k_B:CRYSTAL STRUCTURE OF THE REPLICATION TERMINATOR PROTEIN/B-SITE DNA COMPLEX
--------NASTRGHTSTFT L +-----------------1vtn_C +-----------2 --------NGSARGHGSC-- L ! ! +----6el8_A --3 +------------1 --------NASTRTHTSTLT L ! +----4lg0_A ! LTNTHGRTYTPT-------- L +-----------------------------6qil_A |
> 1fjl_B:HOMEODOMAIN FROM THE DROSOPHILA PAIRED PROTEIN BOUND TO A DNA OLIGONUCLEOTIDE
--RART----VTKGNA--KA L +2lkx_A +-1 RA--RA----IAQTNA---- L +------------------3 +5ego_B ! ! ----RT----NT--NAIARG L ! +1b72_B +------7 ----RT----IAQCNAMG-- L ! ! +----1b72_A ! ! +-------5 ----RC----IAQCNAYC-- L ! ! ! +----3rkq_B ! +------6 ----RT--QTVAQTNA---- L --8 ! +--8osb_E ! +---------4 ----------NCICNARGRG L ! ! +4xrm_B ! +--2 ------RT--NT--NAIARG L ! +4cyc_B ! ----------VTCCNAQA-- L +--------------------------8g87_X |
> 1fok_A:STRUCTURE OF RESTRICTION ENDONUCLEASE FOKI BOUND TO DNA
QANARGQGDTNTWCNGNCECSAKGRGMG---------------------- L +------------------------1fok_A +--3 ----------------------------------------YG-------- ! ! +--3eyi_B ! +---------------------1 --------------------------------------RCYG------KT +-4 +--2acj_B ! ! ----------------------------RC--------IAQCNAYC---- L ! ! +---3rkq_B +-5 +-----------------------2 --------------------------------------NT--NAIARG-- L ! ! +---4cyc_B +-6 ! --------------------------------------NCICNARGRG-- L ! ! +----------------------------4xrm_B --7 ! ------------------------------TTKATTQTTGLTRT--KA-- L ! +----------------------------2p7c_B ! ------------------------------------QTVAQTNA------ L +----------------------------8osb_E |
> 1hcq_E:THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTS
--ECKGAGKGRG L +1hcq_E +-------------1 --ECKGAG--RG L +----2 +4ond_A ! ! ----KGVT--RG L +-3 +--------------2c7a_B ! ! --EAKG--KTRG L +-4 +-------------------4umm_A ! ! --ECKGAGKTRG L --5 +---------------------4aa6_B ! CAECKG--KGRG L +-----------------------1cit_A |
> 1hry_A:THE 3D STRUCTURE OF THE HUMAN SRY-DNA COMPLEX SOLVED BY MULTID- DIMENSIONAL HETERONUCLEAR-EDITED AND-FILTERED NMR
RTNGFTIARA--NASG--STYA L +-----------------------------1j47_A ! --NAFTIARC----SGICSTYA L --3 +1hry_A ! +---------------1 RTNGFTMART--NTAT--SAYA +-------------2 +6t78_A ! RCNGFTMARTHTNG----STYA L +---------------6t90_L |
> 1if1_B:INTERFERON REGULATORY FACTOR 1 (IRF-1) COMPLEX WITH DNA
HTLT------RGNT--RGSTAT--RA-- L +-----------------------------2o6g_G +-2 ------QCKT--RGAT--RGNT------ L +-3 +-----------------------------8smh_F ! ! ----------NAST--RTHT--STLT-- L --4 +-----------------------------4lg0_A ! ----DCKT--RGST----RGYA------ L ! +4bnc_A +----------------------------1 ----DCKT--RG------RGYA----KA L +5jvt_A |
> 1ig7_A:MSX-1 HOMEODOMAIN/DNA COMPLEX STRUCTURE
RART----VTKGNA--KA-- L +2lkx_A +-1 --RA----IAQTNA------ L +-------------------------3 +5ego_B ! ! --RT----NT--NAIARG-- L ! +-1b72_B ! --RT--QTVAQTNA------ L ! +-8osb_E ! +-2 --RT----IAQCNAMG---- L ! +---------4 +-1b72_A --9 ! ! --------NCRG-------- L ! +-----------6 +---4xrm_B ! ! ! --RC----IAQCNAYC---- L ! ! ! +----3rkq_B ! +-7 +--------5 ----RT--NT--NAIARG-- L ! ! ! +----4cyc_B +-8 ! --------VTCCNAQA--RT L ! +-------------------------8g87_X ! --------------YCFAKC L +--------------------------6pe2_B |
> 1jfi_B:CRYSTAL STRUCTURE OF THE NC2-TBP-DNA TERNARY COMPLEX
RAAANA------RT +------------1jfi_B +-7 --------RA---- ! ! +7xsx_a +----8 +------------1 --------RC---- ! ! +7ux9_E ! ! --------RT---- ! +--------------6px1_A ! --------RA---- ! +7e9c_F ! +--------------2 --------RG---- -11 ! +7e9c_G ! ! --------RG---- ! +-9 +8txv_G ! ! ! +-------3 --------RG---- ! ! ! ! +8upf_G ! ! +------6 --------RARA-- +---10 ! +6a5l_g ! +-------4 --------RC---- ! +7yqk_C ! --------RT---- ! +8u14_G +-------------5 ----HGRTRG---- +8rbx_V |
> 1jgg_B:EVEN-SKIPPED HOMEODOMAIN COMPLEXED TO AT-RICH DNA
RT----NT------NA--IARG---- L +-----------------------------1b72_B ! RT----IA----QCNA--MG------ L ! +---1b72_A ! +-----------4 RT----VT----KGNA----KA---- L ! ! ! +2lkx_A ! ! +---1 RA----IA----QTNA---------- L +-8 +-----5 +5ego_B ! ! ! ! RT--QTVA----QTNA---------- L ! ! ! ! +--8osb_E ! ! ! +------------3 ------NC----ICNA--RGRG---- L ! ! +----6 ! +4xrm_B ! ! ! ! +--2 --RT--NT------NA--IARG---- L --9 ! ! ! +4cyc_B ! +--7 ! RC----IA----QCNA--YC------ L ! ! +---------------------3rkq_B ! ! ------VT----CCNA--QA----RT L ! +--------------------------8g87_X ! RT------YTNC----NA----KG-- L +-----------------------------8pi8_B |
> 1k61_B:MATALPHA2 HOMEODOMAIN BOUND TO DNA
RT------------NT--NAIARG L +-----------------------------1b72_B +-1 --RT----------NT--NAIARG L +-2 +-----------------------------4cyc_B ! ! RA------------IAQTNA---- L +-3 +-----------------------------5ego_B ! ! RT------------VTQTNA--RG L +-4 +-----------------------------8ejp_B ! ! ----------STTAQCST------ --5 +-----------------------------8b4b_W ! ----STRGQTQAST---------- L +-----------------------------7t8k_B |
> 1kb2_B:CRYSTAL STRUCTURE OF VDR DNA-BINDING DOMAIN BOUND TO MOUSE OSTEOPONTIN (SPP) RESPONSE ELEMENT
CAECKG--KGRG--RT L +---1cit_A +-------------2 --EAKG--KTRG---- L +---3 +---4umm_A ! ! ----KGVT--RG---- L +----4 +-----------------2c7a_B ! ! --ECKGAG--RG---- L --5 +---------------------4ond_A ! --ECKGAGKGRG---- L ! +1hcq_E +-------------------------1 --ECKGAG--KTRG-- L +4aa6_B |
> 1lat_A:GLUCOCORTICOID RECEPTOR MUTANT/DNA COMPLEX
--ECKGAG--RG L +-----------------------------4ond_A ! CAECKG--KGRG L ! +---1cit_A --5 +-------------2 --EAKG--KTRG L ! +-------3 +---4umm_A ! ! ! ----KGVT--RG L +---4 +-----------------2c7a_B ! --ECKGAGKGRG L ! +1hcq_E +------------------------1 --ECKGAGKTRG L +4aa6_B |
> 1le8_A:CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2-3A HETERODIMER BOUND TO DNA COMPLEX
--QTVAQTNA---- L +8osb_E +--------1 ----IAQTNA---- L ! +5ego_B +---5 ----VTKGNA--KA L ! ! +2lkx_A ! +-------3 ----NT--NAIARG L +---6 +1b72_B ! ! ----NCICNARGRG L ! ! +4xrm_B +---------7 +------------2 RT--NT--NAIARG L ! ! +4cyc_B ! ! ----IAQCNAMG-- L --8 ! +----1b72_A ! +-----------4 ----IAQCNAYC-- L ! +----3rkq_B ! ----VTCCNAQA-- L +--------------------------8g87_X |
> 1lo1_A:ESTROGEN RELATED RECEPTOR 2 DNA BINDING DOMAIN IN COMPLEX WITH DNA
CAECKG--KGRG--RTRT L +---1cit_A +-------------2 --EAKG--KTRG------ L +---3 +---4umm_A ! ! ----KGVT--RG------ L +----4 +-----------------2c7a_B ! ! --ECKGAG--RG------ L --5 +---------------------4ond_A ! --ECKGAGKGRG------ L ! +1hcq_E +-------------------------1 --ECKGAG--KTRG---- L +4aa6_B |
> 1nk2_P:VND/NK-2 HOMEODOMAIN/DNA COMPLEX, NMR, 20 STRUCTURES
RARA--IAQTNA---- L +-5ego_B +--------------1 --RT--NT--NA---- L ! +-1b72_B --3 RCRT--VTQTNA--RG L ! +---8ejp_B +------------2 ----RTNT--NAIARG L +---4cyc_B |
> 1p7h_L:STRUCTURE OF NFAT1 BOUND AS A DIMER TO THE HIV-1 LTR KB ELEMENT
RGRGYTECHG------ L +-----------------------------2o61_B ! ------------PTRG L --3 +1nfk_A ! +--------------1 --------------RG L +--------------2 +1svc_P ! RGRGYTECHGKG---- L +--------------1a3q_A |
> 1puf_A:CRYSTAL STRUCTURE OF HOXA9 AND PBX1 HOMEODOMAINS BOUND TO DNA
--RART----VTKGNA--KA-- L +2lkx_A +-1 RA--RA----IAQTNA------ L +----------------3 +5ego_B ! ! ----RT----NT--NA------ L ! +1b72_B +--------7 ----RT----IAQCNAMG---- L ! ! +----1b72_A ! ! +---5 ----RC----IAQCNAYC---- L ! ! ! +----3rkq_B ! +--------6 ----RT--QTVAQTNA------ L --8 ! +--8osb_E ! +-----4 ----------NCICNARGRG-- L ! ! +4xrm_B ! +--2 ------RT--NT--NAIARG-- L ! +4cyc_B ! ----------VTCCNAQA--RT L +--------------------------8g87_X |
> 1puf_B:CRYSTAL STRUCTURE OF HOXA9 AND PBX1 HOMEODOMAINS BOUND TO DNA
----RT----NT--NAIARG---- L +-----------------------------1b72_B +-3 RA--RA----IAQTNA-------- L ! ! +---5ego_B +-4 +-------------------------2 ------RT--NT--NAIARG---- L ! ! +---4cyc_B +-5 ! --RART----VTKGNAKA------ L ! ! +-----------------------------2lkx_A +-6 ! ----------NCICNA----RGRG L ! ! +-----------------------------4xrm_B ! ! ----RC----IAQCNAYC------ L --7 +-----------------------------3rkq_B ! ----RT--QTVAQTNA-------- L ! +8osb_E +----------------------------1 ----RT----IAQCNAMG------ L +1b72_A |
> 1qbj_C:CRYSTAL STRUCTURE OF THE ZALPHA Z-DNA COMPLEX
------------RC----YG--------KT------ +-----------------------------2acj_B ! ----------NAST--RGHT--STFT---------- L +-5 +---------------------1vtn_C ! ! ! NTHG--RT--YTPT--------------------RT L ! +-------4 +----6qil_A ! ! +------------2 ----------NAST--RTHT--STLT---------- L +-6 +---3 +----4lg0_A ! ! ! ----------NGSA--RGHG--SC------------ L ! ! +-----------------6el8_A +-7 ! --RGTC--DCVA----RGRC----------RC---- L ! ! +-----------------------------8hih_Q +-8 ! ----ST--TAQC----ST------------------ ! ! +-----------------------------8b4b_W ! ! ----HT----RTITYT-------------------- L +-9 +-----------------------------4kfc_B ! ! STRGQTQA--ST----------------HG--KT-- L ! ! +--7t8k_B -10 +--------------------------1 ------------NT------NA--IARG-------- L ! +--4cyc_B ! ------------NT------NA--IARG-------- L +-----------------------------1b72_B |
> 1r7m_B:THE HOMING ENDONUCLEASE I-SCEI BOUND TO ITS DNA RECOGNITION REGION
PTNTYGRGRGQG--EC----KT--RG--VAQC------DTYCNT--------NCQC----------NGKG------------ L +-------------1r7m_B +----------2 ----YTST----------EC--RG--RG----CC--ST--YG------------------YA--------CCKT--KG--TT L ! +-------------2qoj_Z +---4 ----ST------EC--AT----YG--NA----CT----------------------RA--ET--RG----ATDT----TA-- L ! ! +4lq0_A ! ! +--------------1 --------------------------------CC------------------------RT------KGRTVAEC--QT---- L +-5 +---------3 +4yit_A ! ! ! --------------------------------YC----------QARTRGEC------YA--KG--KG--RTWC-------- L ! ! +--------------5t2o_A --6 ! --------------------------------CTVA------------------------ST--DA--RGTC--KT--TG-- L ! +----------------------------5esp_A ! --------------------------------HT------------------------YT--QA--YT--RTWCST--ST-- L +----------------------------5t8d_A |
> 1sax_A:THREE-DIMENSIONAL STRUCTURE OF S.AUREUS METHICILLIN-RESISTANCE REGULATING TRANSCRIPTIONAL REPRESSOR MECI IN COMPLEX WITH 25-BP DS- DNA
TT------KATTQTTG--LTRT----KA----FTYT L +--------2p7c_B +--------------3 ------------NASTRGHT--STFT---------- L ! +--------1vtn_C +-----5 ----DCLT--AGTTRG----RG--------RA---- L ! ! +5h3r_A +-6 +-----------------------1 --------------RC--YG--------KT------ ! ! +2acj_B ! ! ------------------YG---------------- ! +-----------------------------3eyi_B --7 ------------NASTRTHT--ST------------ L ! +---3l2c_A ! +-----2 ------------NASTRGHT--STLT---------- L +-------------------4 +---7cby_C ! --LANTHGTTETYTRG-------------------- L +---------1f4k_B |
> 1sfu_A:CRYSTAL STRUCTURE OF THE VIRAL ZALPHA DOMAIN BOUND TO LEFT-HANDED Z- DNA
----------------RC----YG--------KT---- +-----------------------------2acj_B +-2 ----ITRGECSC--SGKG-------------------- L ! +-----------------------------5i2d_R +-3 ----------------NAST--HT--STFT-------- L ! ! +------1vtn_C +-4 +----------------------1 --------------NAST--RTHT--STLT-------- L ! ! +------4lg0_A +-5 ! ------RGTC--DCVA----RGRC----------RC-- L ! ! +-----------------------------8hih_Q +-6 ! --QTSTRTETTA----RA-------------------- L ! ! +-----------------------------3iyd_H --7 ! VT--HTPTSA----TTKG------------------YT L ! +-----------------------------9c4c_G ! ----------------NT------NA--IARG------ L +-----------------------------4cyc_B |
> 1u35_G:CRYSTAL STRUCTURE OF THE NUCLEOSOME CORE PARTICLE CONTAINING THE HISTONE DOMAIN OF MACROH2A
--------RG-- +-----------------------------8upf_G ! --------RT-- ! +8u14_G ! +--------------4 --------RC-- ! ! +7yqk_C +-12 +-------9 --------RG-- ! ! ! ! +8txv_G ! ! ! +--------------5 --------RARA ! ! ! ! +6a5l_g ! ! ! +-3 ----HGRTRG-- ! ! ! +8rbx_V ! +----11 --------RGRG ! ! +------8kcb_A ! ! +---------------6 --------RA-- ! ! ! +------7e9c_F -13 ! ! --------RA-- ! ! ! +7xsx_a ! +-10 +--------------1 --------RC-- ! ! ! +7ux9_E ! ! +-7 --LA----RG-- ! ! ! ! +7unc_a ! +-------8 +--------------2 --------RT-- ! ! +6px1_A ! ! --LC-------- ! +--------------8bvw_e ! RG---------- +-----------------------------7ccr_H |
> 1vtn_C:CO-CRYSTAL STRUCTURE OF THE HNF-3/FORK HEAD DNA-RECOGNITION MOTIF RESEMBLES HISTONE H5
--NASTRGHT--STFT----RTRA L +------1vtn_C +-------------1 --NASTRTHT--STLT-------- L +--2 +------4lg0_A ! ! ----RC--YG--------KT---- --3 +--------------------2acj_B ! KT--RG--RGYA----KA------ L +-----------------------5jvt_A |
> 1w0t_A:HTRF1 DNA-BINDING DOMAIN IN COMPLEX WITH TELOMERIC DNA.
RT------QTVAQTNA-- L +8osb_E +--1 RA--------IAQTNA-- L +----------------2 +5ego_B ! ! RC--------IAQCNAYC L +---------4 +--3rkq_B ! ! RT--------IAQCNAMG L ! ! +---1b72_A --5 +---------------3 RT--------VTKGNA-- L ! +---2lkx_A ! --NARTQT--EC------ L +-----------------------------2kdz_A |
> 1xsd_A:CRYSTAL STRUCTURE OF THE BLAI REPRESSOR IN COMPLEX WITH DNA
TT------KATTQTTG----LTRT----KA--FTYT L +---------2p7c_B +----------4 ------------NAST--RGHT--STFT-------- L ! +---------1vtn_C +-----7 --------DCKT--RG----RGYA----KA------ L ! ! +-5jvt_A ! +------------------3 --------DCKT--RGST--RGYA------------ L +-8 +-4bnc_A ! ! ------RGSTRTSTHG----------------RA-- L ! ! +---------------3zpl_B ! +----------5 ------------NAST--RTHT--ST---------- L ! ! +3l2c_A --9 +---------------2 --ST--------NAST--RTHT--STLT-------- L ! +4lg0_A ! ----DCLT--AGTTRG------RG--------RA-- L ! +5h3r_A ! +----------------1 --------------RC----YG--------KT---- +---------6 +2acj_B ! --------------------YG-------------- +----------------3eyi_B |
> 1z9c_A:CRYSTAL STRUCTURE OF OHRR BOUND TO THE OHRA PROMOTER: STRUCTURE OF MARR FAMILY PROTEIN WITH OPERATOR DNA
--DCLT--AGTTRG----RG----RA---- L +5h3r_A +---------------1 ------------RC--YG----KT------ +-----2 +2acj_B ! ! ----RGSTRTSTHG----------RA---- L +-------3 +---------------3zpl_B ! ! TT----KATTQTTG--LTRTKA----FTYT L +-4 +---------------------2p7c_B ! ! ----RGTCTA--RGNT--------RT---- L --5 +-----------------------------4fx4_B ! ----------------YG------------ +-----------------------------3eyi_B |
> 1zq3_P:NMR SOLUTION STRUCTURE OF THE BICOID HOMEODOMAIN BOUND TO THE CONSENSUS DNA BINDING SITE TAATCC
----RT--QTVAQTNA------ L +8osb_E +--------1 RA--RA----IAQTNA------ L ! +5ego_B +-----5 --RART----VTKGNA--KA-- L ! ! +2lkx_A ! +-------3 ----RT----NT--NA------ L ! +1b72_B +-----------7 ----RT----IAQCNAMG---- L ! ! +----1b72_A ! ! +-----4 ----RC----IAQCNAYC---- L ! ! ! +----3rkq_B --8 +---6 ----------NCICNARGRG-- L ! ! +4xrm_B ! +----------2 ------RT--NT--NAIARG-- L ! +4cyc_B ! ----------------YCFAKC L +--------------------------6pe2_B |
> 2a07_J:CRYSTAL STRUCTURE OF FOXP2 BOUND SPECIFICALLY TO DNA.
------------------NAST--RGHT--STLT---------- L +7cby_C +----1 ------------------NAST--RGHT--STFT---------- L +---------------3 +1vtn_C ! ! ------ST----------NAST--RTHT--STLT---------- L ! +-----4lg0_A +----7 --TT--------KATT--QTTG----LTRT----KA----FTYT L ! ! +-----2p7c_B ! ! +------------2 ------------------RC------YG--------KT------ ! +--5 +-----2acj_B ! ! --------------KT----RG----RGYA----KA-------- L +-9 +------------------5jvt_A ! ! ------ST----------NAST--RTHT--ST------------ L ! ! +---------3l2c_A ! ! +----------4 ------------------RGNT--RGSTAT--RA---------- L ! ! +--6 +---------2o6g_G +-10 ! ! ! --------RGSTRT--STHG------------------RA---- L ! ! +--8 +--------------------3zpl_B ! ! ! RT--LA--NTHGTTET--YTRG---------------------- L -11 ! +-----------------------1f4k_B ! ! --------------KT----RGAT--RGNT-------------- L ! +---------------------------8smh_F ! --------------------------YG---------------- +-----------------------------3eyi_B |
> 2a66_A:HUMAN LIVER RECEPTOR HOMOLOGUE DNA-BINDING DOMAIN (HLRH-1 DBD) IN COMPLEX WITH DSDNA FROM THE HCYP7A1 PROMOTER
--EAKG--KTRG-- L +-----------------------------4umm_A ! CAECKG--KGRG-- L ! +----1cit_A +-4 +------------1 ----KGVT--RG-- L ! ! +---2 +----2c7a_B ! ! ! ! --ECKGAG--RG-- L --5 +-------3 +-----------------4ond_A ! ! --ECKGAG--KTRG L ! +---------------------4aa6_B ! --ECKGAGKGRG-- L +-----------------------------1hcq_E |
> 2acj_B:CRYSTAL STRUCTURE OF THE B/Z JUNCTION CONTAINING DNA BOUND TO Z-DNA BINDING PROTEINS
------LT------RTSGTG--QTRG-------------------- L +-----------------------------2xro_E +-1 --------TC--STKTPTTT--FT--------------------RT +-2 +-----------------------------4ass_H ! ! ----------------TTHT----KG--------------RC---- L +-3 +-----------------------------7b0c_A ! ! --------------RC------RC---------------------- +-4 +-----------------------------6wfq_C ! ! --------------RCTT----TTHT--LA---------------- L +-5 +-----------------------------7e1b_B ! ! RGRTKG----------------------------------YG---- L +-6 +-----------------------------6lui_A ! ! --------------------------------------------RT +-7 +-----------------------------3gfi_A ! ! ------------------------------YG-------------- +-8 +-----------------------------2heo_D ! ! ------------DCLT--AG--TTRG------RG----------RA L +-9 +-----------------------------5h3r_A ! ! --------SGQG--YCNC---------------------------- +-10 +-----------------------------2ve9_C ! ! ------------------QTNAST--RGHTNT--STLA-------- L +-11 +-----------------------------2hdc_A ! ! ----------------------NAST--RGHT----ST-------- L +-12 +-----------------------------3g73_A ! ! ----------------NTVC--ECSTYT--STYC------RA---- L +-13 +-----------------------------5ed4_A ! ! ----------------NT----TA------------------RT-- L +-14 +-----------------------------5zux_A ! ! ----------------------NAST--RGHTNT--STLT------ L +-15 +-----------------------------7fj2_B ! ! ------------STRGECTA--NGKG-------------------- L +-16 +-----------------------------3mzh_A ! ! ------------TT--RGRT--------------------SG---- L -17 +-----------------------------2v1u_A ! ----------------DCKT----RG----RGYA------------ L +-----------------------------1dux_F |
> 2bzf_A:STRUCTURAL BASIS FOR DNA BRIDGING BY BARRIER-TO-AUTOINTEGRATION FACTOR (BAF)
NT--NAIARG L +-----------------------------4cyc_B +-2 IAQTNA---- L ! ! +-5ego_B --3 +---------------------------1 NT--NAIARG L ! +-1b72_B ! VTQTNA--RG L +-----------------------------8ejp_B |
> 2c6y_A:CRYSTAL STRUCTURE OF INTERLEUKIN ENHANCER-BINDING FACTOR 1 BOUND TO DNA
----------------NAST--RGHT--STLT------ L +7cby_C +-----1 ----------------NAST--RGHT--STFT------ L +-------------3 +1vtn_C ! ! ------ST--------NAST--RTHT--STLT------ L +----5 +------4lg0_A ! ! ----------RGSTRTSTHG--------------RA-- L ! ! +-3zpl_B +-7 +------------------2 ------------------RC----YG------------ ! ! +-2acj_B ! ! RT--LA--NTHGTTETYTRG------------------ L --8 +-------------------------1f4k_B ! ------ST--------NAST--RTHT--ST-------- L ! +---------3l2c_A ! +----------4 --------------------NTRGSTAT--RA------ L +-----6 +---------2o6g_G ! --TT--------KATTQTTG----LTRT----KA--FT L +--------------------2p7c_B |
> 2d5v_B:CRYSTAL STRUCTURE OF HNF-6ALPHA DNA-BINDING DOMAIN IN COMPLEX WITH THE TTR PROMOTER
----------RT--QTVAQTNA---- L +8osb_E +--1 ----------RA----IAQTNA---- L +----4 +5ego_B ! ! ----------RT----IAQCNAMG-- L +-----5 +--1b72_A ! ! ----------RT----VTKGNA--KA L ! ! +2lkx_A +--6 +------3 ----------RT----NT--NAIARG L ! ! +1b72_B ! ! ----------RC----IAQCNAYC-- L +---------7 +-------------3rkq_B ! ! ----------------NCICNARGRG L ! ! +4xrm_B --8 +----------------2 ------------RT--NT--NAIARG L ! +4cyc_B ! SGQATGCARG---------------- L +--------------------------8g87_X |
> 2ff0_A:SOLUTION STRUCTURE OF STEROIDOGENIC FACTOR 1 DNA BINDING DOMAIN BOUND TO ITS TARGET SEQUENCE IN THE INHIBIN ALPHA-SUBUNIT PROMOTER
--EA--KG----KTRG-- L +-----------------------------4umm_A ! CAEC--KG----KGRG-- L ! +----1cit_A +-4 +------------1 ------KGVT----RG-- L ! ! +---2 +----2c7a_B ! ! ! ! --EC--KGAG----RG-- L --5 +-------3 +-----------------4ond_A ! ! ----EC--KGAG--KTRG L ! +---------------------4aa6_B ! --EC--KGAG--KGRG-- L +-----------------------------1hcq_E |
> 2fr4_L:STRUCTURE OF FAB DNA-1 COMPLEXED WITH A STEM-LOOP DNA LIGAND
----YTYTNTEC--HTYT------ +2fr4_L +--------------1 NAYAYA--TA--SA------HA-- +-----2 +3vw3_L ! ! ----------ST----------WG --3 +---------------7v5n_E ! ------------------YA---- +---------------------3vw3_H |
> 2han_A:STRUCTURAL BASIS OF HETERODIMERIC ECDYSTEROID RECEPTOR INTERACTION WITH NATURAL RESPONSE ELEMENT HSP27 GENE PROMOTER
--EAKG--KTRG-- L +-----------------------------4umm_A ! CAECKG--KGRG-- L ! +----1cit_A +-4 +------------1 ----KGVT--RG-- L ! ! +---2 +----2c7a_B ! ! ! ! --ECKGAG--RG-- L --5 +-------3 +-----------------4ond_A ! ! --ECKGAG--KTRG L ! +---------------------4aa6_B ! --ECKGAGKGRG-- L +-----------------------------1hcq_E |
> 2han_B:STRUCTURAL BASIS OF HETERODIMERIC ECDYSTEROID RECEPTOR INTERACTION WITH NATURAL RESPONSE ELEMENT HSP27 GENE PROMOTER
CAECKG--KGRG-- L +---1cit_A +-------------2 --EAKG--KTRG-- L +------4 +---4umm_A ! ! ----KGVT--RG-- L ! +-----------------2c7a_B --5 --ECKGAGKGRG-- L ! +-1hcq_E ! +-------------1 --ECKGAG--RG-- L +--------3 +-4ond_A ! --ECKGAG--KTRG L +---------------4aa6_B |
> 2hdc_A:STRUCTURE OF TRANSCRIPTION FACTOR GENESIS/DNA COMPLEX
--------------NAST--RGHT--STLT-------- L +----7cby_C ! RTLA--NTHGTTET--YTRG------------------ L +------------3 +1f4k_B ! ! +---1 --------------NAST--RGHT----------RTRA L ! +-2 +1vtn_C +----4 ! ----ST----------NAST--RTHT--STLT------ L ! ! +---4lg0_A --5 ! ----ST----------NAST--RTHT--ST-------- L ! +-----------------3l2c_A ! ------------------RC----YG------KT---- +----------------------2acj_B |
> 2hos_A:PHAGE-SELECTED HOMEODOMAIN BOUND TO UNMODIFIED DNA
----NT--NAIARG-- L +-----------------------------1b72_B ! ----VTKGNA--KA-- L ! +2lkx_A ! +---1 ----IAQTNA------ L ! +----------------4 +5ego_B ! ! ! RT--NT--NAIARG-- L ! ! +---4cyc_B --9 ! --QTVAQTNA------ L ! +-----6 +8osb_E ! ! ! +-2 ----IAQCNAMG---- L ! ! ! +---------3 +1b72_A ! ! ! ! ! ----NCICRG------ L ! +-7 +-------5 +--4xrm_B ! ! ! ! ----IAQCNAYC---- L ! ! ! +------------3rkq_B +--8 ! ----VTCCNAQA--RT L ! +--------------------------8g87_X ! ----------YCFAKC L +--------------------------6pe2_B |
> 2ihn_A:CO-CRYSTAL OF BACTERIOPHAGE T4 RNASE H WITH A FORK DNA SUBSTRATE
--IG--STTGLTVA------------NCSGKCFGNGKAKANAKASA--STWTECFCHA----MAHT----RTKCLCNGSC L +------------2ihn_A +----------2 ----------FCRT--KCHANGSA--------------LT------KC----------FTFC----RTLA---------- L ! +------------5hp4_A --3 IT--YTQT--KT-------------------------------------------------------------------- ! +4q0w_A +-----------------------1 ------------AGVG--QC----QCMC---------------------------------------------------- +5zoe_A |
> 2isz_B:CRYSTAL STRUCTURE OF A TWO-DOMAIN IDER-DNA COMPLEX CRYSTAL FORM I
--QT--PTAT--TT------------YT---- +8pw0_A +----------1 ------RGSTRTSTHG--------RA------ L ! +3zpl_B +----3 ----------------YG-------------- ! ! +--3eyi_B +---4 +-------2 --------------RCYG----KT-------- ! ! +--2acj_B --5 ! ----DCLT--AGTTRG--RG------------ L ! +---------------5h3r_A ! TT------KATTQTTGLTRTKA------FTYT L +-------------------2p7c_B |
> 2lkx_A:NMR STRUCTURE OF THE HOMEODOMAIN OF PITX2 IN COMPLEX WITH A TAATCC DNA BINDING SITE
--RARA--------IAQTNA------ L +---------------5ego_B +----3 RC--RT------YANC--NAKG---- L ! ! +4j19_B ! +--------------2 ----RT--------NT--NA--IARG L --4 +1b72_B ! --------YTVCKGDCKC-------- L ! +2qhb_A +--------------------1 ------RT------NT--NAIARG-- L +4cyc_B |
> 2n8a_A:1H, 13C AND 15N CHEMICAL SHIFT ASSIGNMENTS AND SOLUTION STRUCTURE FOR PARP-1 F1F2 DOMAINS IN COMPLEX WITH A DNA SINGLE-STRAND BREAK
--RGSTFGVTPCRG--QCLCIG L +------------2n8a_A +--------1 ------------RGKG--LCIG +--2 +------------3odc_B ! ! --RG--FCVGPG---------- --3 +---------------------3od8_G ! STRG------------------ +------------------------4av1_A |
> 2nll_B:RETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DNA-BINDING DOMAIN HETERODIMER BOUND TO THYROID RESPONSE ELEMENT DNA
CAECKG--KGRGRT L +---1cit_A +-------------1 --EAKG--KTRG-- L +---2 +---4umm_A ! ! ----KGVT--RG-- L +-3 +-----------------2c7a_B ! ! --ECKGAG--RG-- L +-----4 +---------------------4ond_A ! ! --ECKGAGKTRG-- L --5 +-----------------------4aa6_B ! --ECKGAGKGRG-- L +-----------------------------1hcq_E |
> 2p5l_D:CRYSTAL STRUCTURE OF A DIMER OF N-TERMINAL DOMAINS OF AHRC IN COMPLEX WITH AN 18BP DNA OPERATOR SITE
TTKATG----LTRT--KAFTYT L +--------2p7c_B +--------------------3 --------NAHT--ST------ L ! ! +------1vtn_C ! +-1 ------NASTHT--ST------ L +-4 +------4lg0_A ! ! --------NAHT---------- L ! ! +------7cby_C --5 +----------------------2 ------NASTHT--ST------ L ! +------3l2c_A ! ----------YG---------- +-----------------------------3eyi_B |
> 2p7c_B:SOLUTION STRUCTURE OF THE BACILLUS LICHENIFORMIS BLAI MONOMERIC FORM IN COMPLEX WITH THE BLAP HALF-OPERATOR.
LT--NTHG--RTYTPT----------------RT L +-----6qil_A +-----------3 --------------RC----YG--------KT-- ! +-----2acj_B +---4 ------------NGSA--RGHG--SC-------- L ! ! +6el8_A ! ! +--1 ------------NAST--RGHT--STFT------ L +-------5 +--------------2 +1vtn_C ! ! ! --ST--------NAST--RTHT--STLT------ L ! ! +--4lg0_A +-6 ! --------DCKT--RG----RGYA----KA---- L ! ! +---------------------5jvt_A +-7 ! ----STRGQTQAST----------------HGKT L ! ! +-----------------------------7t8k_B --8 ! ----------STTAQC----ST------------ ! +-----------------------------8b4b_W ! --------KGTGKANGYAST-------------- L +-----------------------------1zlk_A |
> 2pi0_B:CRYSTAL STRUCTURE OF IRF-3 BOUND TO THE PRDIII-I REGULATORY ELEMENT OF THE HUMAN INTERFERON-B ENHANCER
HTLT------RGNT--RGSTAT--RA-- L +-----------------------------2o6g_G +-2 --------NAST----RTHT--STLT-- L ! +-----------------------------4lg0_A +-3 ----DCKT----RG----RGYA----KA L ! ! +5jvt_A --4 +----------------------------1 ----DCKT----RGST--RGYA------ L ! +4bnc_A ! ----QCKT----RGAT--RGNT------ L +-----------------------------8smh_F |
> 2qby_A:CRYSTAL STRUCTURE OF A HETERODIMER OF CDC6/ORC1 INITIATORS BOUND TO ORIGIN DNA (FROM S. SOLFATARICUS)
----------TTKATTQTTG--LTRT----KAFTYT L +-----------------------------2p7c_B +-1 ------------------NASTHT--STLT------ L +-2 +-----------------------------7cby_C ! ! ----------------------YG------------ --3 +-----------------------------3eyi_B ! NGSGWGFARA-------------------------- L +-----------------------------7aud_E |
> 2qhb_A:CRYSTAL STRUCTURE OF NGTRF COMPLEXED WITH TELOMERIC DNA
RART------VTKG--KA-- L +2lkx_A +---------------1 --RA------IAQTNA---- L +----2 +5ego_B ! ! --RT------NT--NAIA-- L +--3 +---------------1b72_B ! ! ----RT----NT--NAIARG L +-----4 +--------------------4cyc_B ! ! --RT------IAQCNAMG-- L --5 +-----------------------1b72_A ! ------RGDTVTSTRG---- L +-----------------------------6lxn_A |
> 2r5y_A:STRUCTURE OF SCR/EXD COMPLEX BOUND TO A CONSENSUS HOX-EXD SITE
RARA--IAQTNA---- L +-5ego_B +--------------1 --RT--NT--NAIARG L ! +-1b72_B --3 RCRT--VTQTNA--RG L ! +---8ejp_B +------------2 ----RTNT--NAIARG L +---4cyc_B |
> 2stt_A:SOLUTION NMR STRUCTURE OF THE HUMAN ETS1/DNA COMPLEX, 25 STRUCTURES
DCKTRG--RGYA--KA L +5jvt_A +--------------------1 DCKTRGSTRGYA---- L +-------2 +4bnc_A ! ! ----RGNT----RA-- L --3 +---------------------2o6g_G ! QCKTRGATRGNT---- L +-----------------------------8smh_F |
> 2uzk_A:CRYSTAL STRUCTURE OF THE HUMAN FOXO3A-DBD BOUND TO DNA
----ST------NASTRTHT--STLT---------- L +4lg0_A +--------------------------1 ------------NASTRGHT--STFT---------- L ! +1vtn_C ! ----ST------NASTRTHT--ST------------ L ! +---3l2c_A ! +-----3 ------------NASTRGHT--STLT---------- L ! +-------4 +---7cby_C --8 ! ! --LA--NTTTETYTRG-------------------- L ! +-5 +---------1f4k_B ! ! ! TT------KATTQTTG--LTRT----KA----FTYT L ! +---6 +-----------------2p7c_B ! ! ! --------STRTSTHG--------------RA---- L ! ! ! +-3zpl_B +--7 +-----------------2 --------------RC--YG--------KT------ ! +-2acj_B ! ------------RGNTRGSTAT--RA---------- L +-----------------------2o6g_G |
> 2v1u_A:STRUCTURE OF THE AEROPYRUM PERNIX ORC1 PROTEIN IN COMPLEX WITH DNA
RT--LANTHGTTETYTRG---------------------- L +1f4k_B +---------------------1 --------------NAST--RGHT--STFT--------RT L ! +1vtn_C ! ----------------NAST--HT--STLT---------- L --5 +-----7cby_C ! +---------2 --------------NAST--RTHT--STLT---------- L ! ! +-----4lg0_A +-----4 --TT------KATTQTTG----LTRT----KA--FTYT-- L ! +-----2p7c_B +---------3 ----------------RC----YG--------KT------ +-----2acj_B |
> 2xhb_A:CRYSTAL STRUCTURE OF DNA POLYMERASE FROM THERMOCOCCUS GORGONARIUS IN COMPLEX WITH HYPOXANTHINE-CONTAINING DNA
PIPIVIIIPGFIKGRINTNTFCQGMGDARAYTRGWGDG------WG--------------------------RGDA-- L +--------------2xhb_A +-----1 ------IT------------------------------QGQAVT--FTIGNGSGYGFT--VAKTLT------------ L +-------2 +--------------3iay_A ! ! --------------------------RT----------RC--------LC--SCYG--FAYA---------------- L --3 +--------------------8g9l_A ! ------------------------------------------------------------------RTPTST----KT L +----------------------------7uin_D |
> 2xro_E:CRYSTAL STRUCTURE OF TTGV IN COMPLEX WITH ITS DNA OPERATOR
LTRTSGTGQTRG------------ L +-------------------2xro_E +----1 ----------RCYG----KT---- +-2 +-------------------2acj_B ! ! ------------YG---------- --3 +------------------------3eyi_B ! TT--KATTQTTGLTRTKA--FTYT L +--------------------------2p7c_B |
> 2z33_A:SOLUTION STRUCTURE OF THE DNA COMPLEX OF PHOB DNA- BINDING/TRANSACTIVATION DOMAIN
--RGTCDCVA----RGRC------RC L +----------8hih_Q +------------------1 --------RC------------KT-- +-2 +----------2acj_B ! ! --HT--RTITYT-------------- L +-3 +-----------------------------4kfc_B ! ! ----STTAQC----ST---------- +-4 +-----------------------------8b4b_W ! ! LG--TAKGTA----HTRG-------- L +-5 +-----------------------------6jhe_A ! ! --------NT------NAIARG---- L +-6 +-----------------------------1b72_B ! ! --------NT------NAIARG---- L --7 +-----------------------------4cyc_B ! ------NGSA--RG------------ L +-----------------------------6el8_A |
> 3a01_E:CRYSTAL STRUCTURE OF ARISTALESS AND CLAWLESS HOMEODOMAINS BOUND TO DNA
RA--IAQTNA---- L +-5ego_B +-------------1 RT--NT--NA---- L +-----2 +-1b72_B ! ! RT--VTQTNA--RG L --3 +---------------8ejp_B ! --RTNT--NAIARG L +---------------------4cyc_B |
> 3aaf_B:STRUCTURE OF WRN RQC DOMAIN BOUND TO DOUBLE-STRANDED DNA
TT------KATTQTTG--LTRT----KA--YT-- L +-----2p7c_B +---2 --------------RC--YG--------KT---- +--------------3 +-----2acj_B ! ! ------------NASTRGHT--STFT------RA L ! +---------1vtn_C +----6 ------------NASTRGHT--STLT-------- L ! ! +-----7cby_C ! ! +------------1 ------------NASTRTHT--STLT-------- L ! ! ! +-----4lg0_A --7 +-----5 ------------NASTRTHT--ST---------- L ! ! +-----------3l2c_A ! +------4 --LANTHGTTETYTRG------------------ L ! +-----------1f4k_B ! ------------------YG-------------- +-----------------------------3eyi_B |
> 3cbb_A:CRYSTAL STRUCTURE OF HEPATOCYTE NUCLEAR FACTOR 4ALPHA IN COMPLEX WITH DNA: DIABETES GENE PRODUCT
CAECKG--KGRG-- L +---1cit_A +-------------1 --EAKG--KTRG-- L +---2 +---4umm_A ! ! ----KGVT--RG-- L +-3 +-----------------2c7a_B ! ! --ECKGAG--RG-- L +-----4 +---------------------4ond_A ! ! --ECKGAG--KTRG L --5 +-----------------------4aa6_B ! --ECKGAGKGRG-- L +-----------------------------1hcq_E |
> 3cmy_A:STRUCTURE OF A HOMEODOMAIN IN COMPLEX WITH DNA
RARA--IAQTNA---- L +-5ego_B +--------------1 --RT--NT--NAIARG L ! +-1b72_B --3 RCRT--VTQTNA--RG L ! +---8ejp_B +------------2 ----RTNT--NAIARG L +---4cyc_B |
> 3co6_C:CRYSTAL STRUCTURE OF FOXO1 DBD BOUND TO DBE1 DNA
--------NAST--RTHT--STLT-------- L +4lg0_A +-------------------------1 --------NAST--RGHT--STFT-------- L ! +1vtn_C ! --------NAST--RTHT--ST---------- L ! +---3l2c_A +-7 +------3 --------NAST--RGHT--STLT-------- L ! ! +------4 +---7cby_C ! ! ! ! TT--KATTQTTG----LTRT----KA--FT-- L ! ! +----5 +----------2p7c_B ! ! ! ! --------RGNT--RGSTAT--RA-------- L --8 +--6 +-----------------2o6g_G ! ! --RGSTRTSTHG------------------RA L ! ! +3zpl_B ! +---------------------2 ----------RC----YG--------KT---- ! +2acj_B ! ------KT--RGAT--RGNT------------ L +---------------------------8smh_F |
> 3cro_R:THE PHAGE 434 CRO/OR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTION
QTET--QASG--------ITNG-- L +------------------------7jvt_D +----2 --SGAAKGSGYGST--RT------ L ! ! +---3zkc_A +-3 +--------------------1 ----NTQASAHTSAQT----TTPG L ! ! +---8pi8_B --4 ! ----SGKGSCQTSTRG-------- L ! +-----------------------------6w1a_A ! ----SGQATG--CARG-------- L +-----------------------------8g87_X |
> 3d1n_M:STRUCTURE OF HUMAN BRN-5 TRANSCRIPTION FACTOR IN COMPLEX WITH CORTICOTROPHIN-RELEASING HORMONE GENE PROMOTER
RCRT--VTQTNA--RG L +8ejp_B +-1 RARA--IAQTNA---- L +----------2 +5ego_B ! ! --RT--NT--NAIARG L --3 +-1b72_B ! ----RTNT--NAIARG L +------------4cyc_B |
> 3eyi_B:THE CRYSTAL STRUCTURE OF THE SECOND Z-DNA BINDING DOMAIN OF HUMAN DAI (ZBP1) IN COMPLEX WITH Z-DNA
--------HT----RTITYT------------ L +-----------------------------4kfc_B +-3 --LTNTHG--RT--YTPT----------RT-- L ! ! +-----------------6qil_A ! +-----------2 ----STRGQTQA--ST----------HG--KT L +-4 ! +----7t8k_B ! ! +------------1 ----------------RC----YG--KT---- ! ! +----2acj_B +-5 ! --------ST--TAQC----ST---------- ! ! +-----------------------------8b4b_W +-6 ! ------KGTG--KANGYA--ST---------- L ! ! +-----------------------------1zlk_A --7 ! LG------TA--KGTA----HTRG-------- L ! +-----------------------------6jhe_A ! --------------NGSA--RGHGSC------ L +-----------------------------6el8_A |
> 3g73_A:STRUCTURE OF THE FOXM1 DNA BINDING
--------------NAST--RGHT--STLT-------- L +7cby_C +----1 --------------NAST--RGHT--STFT-------- L +--------------3 +1vtn_C ! ! --------------NAST--RTHT--STLT-------- L ! +-----4lg0_A +--7 --TT------KATTQTTG----LTRT----KA--FTYT L ! ! +-----------------2p7c_B ! +--5 ----------STRTSTHG----------------RA-- L ! ! +3zpl_B +---8 +----------------2 ----------------RC----YG--------KT---- ! ! +2acj_B ! ! --------------NAST--RTHT--ST---------- L ! ! +---------3l2c_A --9 ! +----------4 --------------RGNT--RGSTAT--RA-------- L ! +--6 +---------2o6g_G ! ! RT--LANTHGTTETYTRG-------------------- L ! +--------------------1f4k_B ! ------------KT--RGAT--RGNT------------ L +---------------------------8smh_F |
> 3g9m_B:GR DNA-BINDING DOMAIN:SGK 16BP COMPLEX-44
----KGVT--RG--RC L +-----------------------------2c7a_B ! CAECKG--KGRG---- L ! +---1cit_A --5 +-------------2 --EAKG--KTRG---- L ! +-------3 +---4umm_A ! ! ! --ECKGAG--RG---- L +---4 +-----------------4ond_A ! --ECKGAGKGRG---- L ! +1hcq_E +------------------------1 --ECKGAG--KTRG-- L +4aa6_B |
> 3hts_B:HEAT SHOCK TRANSCRIPTION FACTOR/DNA COMPLEX
----DCKTRGYAKA-- L +5jvt_A +--------------------1 ----DCKTRGYA---- L +-------2 +4bnc_A ! ! LTRTYTPT------RT L --3 +---------------------6qil_A ! ----QAKTRGNT---- L +-----------------------------8ee9_F |
> 3jtg_A:CRYSTAL STRUCTURE OF MOUSE ELF3 C-TERMINAL DNA-BINDING DOMAIN IN COMPLEX WITH TYPE II TGF-BETA RECEPTOR PROMOTER DNA
QCKT--RGAT--RGNT------ L +-----------------------------8smh_F +-2 DCKT--RG----RGYA----KA L ! ! +5jvt_A --3 +----------------------------1 DCKT--RGST--RGYA------ L ! +4bnc_A ! ----NAST--RGHT--STFT-- L +-----------------------------1vtn_C |
> 3l2c_A:CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF FOXO4 BOUND TO DNA
------ST------NAST--RTHT--STLT---- L +4lg0_A +------------------------1 --------------NAST--RGHT--STFT---- L ! +1vtn_C ! ------ST------NAST--RTHT--ST------ L ! +--3l2c_A ! +------2 --------------NAST--RGHT--STLT---- L --7 +-----3 +--7cby_C ! ! ! ------------RTSTHG--------------RA L ! +---4 +---------3zpl_B ! ! ! RT--LA--HGTTETYTRG---------------- L ! +--5 +---------------1f4k_B ! ! ! --TT------KATTQTTG----LTRT----KA-- L +-6 +-------------------2p7c_B ! ----------------RGNTRGSTAT--RA---- L +----------------------2o6g_G |
> 3lnq_A:STRUCTURE OF ARISTALESS HOMEODOMAIN IN COMPLEX WITH DNA
RA--IAQTNA---- L +-5ego_B +--------------1 RT--NT--NAIARG L +------------2 +-1b72_B ! ! --RTNT--NAIARG L --3 +----------------4cyc_B ! RT--VTQTNA--RG L +-----------------------------8ejp_B |
> 3q5f_A:CRYSTAL STRUCTURE OF THE SALMONELLA TRANSCRIPTIONAL REGULATOR SLYA IN COMPLEX WITH DNA
----RGSTRTSTHG--------RA---- L +---------------3zpl_B +-----2 --DCLT--AGTTRG--RG----RA---- L ! ! +5h3r_A +-------3 +---------------1 ------------RCYG----KT------ ! ! +2acj_B --4 ! TT----KATTQTTGLTRTKA----FTYT L ! +---------------------2p7c_B ! --------------YG------------ +-----------------------------3eyi_B |
> 3rkq_B:NKX2.5 HOMEODOMAIN DIMER BOUND TO ANF-242 DNA
RCRT------------VTQTNA--RG L +8ejp_B +-1 RARA------------IAQTNA---- L +----------2 +5ego_B ! ! --RT------------NT--NAIARG L +----------------3 +-1b72_B ! ! ----RT----------NT--NAIARG L --4 +------------4cyc_B ! ------STRGQTQAST---------- L +-----------------------------7t8k_B |
> 3wkj_D:THE NUCLEOSOME CONTAINING HUMAN TSH2B
RG---- +-----------------------------7ccr_H +-8 --RG-- ! +-----------------------------8upf_G ! --RT-- ! +8u14_G ! +-----------------2 --RC-- --9 +--5 +7yqk_C ! ! ! --RA-- ! ! +------------------7e9c_F ! ! --RARA ! ! +6a5l_g +-------7 +-1 --RG-- ! +----------------3 +8txv_G ! ! ! --RG-- ! +--4 +8rbx_V ! ! ! --RC-- +-6 +-----------------7ux9_E ! --RT-- +--------------------6px1_A |
> 3x1t_G:CRYSTAL STRUCTURE OF NUCLEOSOME CORE PARTICLE CONSISTING OF MOUSE TESTIS SPECIFIC HISTONE VARIANTS H2AA AND H2BA
----RG-- +8txv_G +---------------1 ----RG-- +-------4 +8upf_G ! ! ----RC-- ! +---------------7yqk_C ! ----RT-- ! +-8u14_G ! +-------------3 ----RARA --8 ! ! +6a5l_g ! +----5 +-2 HGRTRG-- ! ! ! +8rbx_V ! +-6 ! ----RA-- ! ! ! +---------------7e9c_F +-7 ! ----RC-- ! +--------------------7ux9_E ! ----RT-- +----------------------6px1_A |
> 3x1t_H:CRYSTAL STRUCTURE OF NUCLEOSOME CORE PARTICLE CONSISTING OF MOUSE TESTIS SPECIFIC HISTONE VARIANTS H2AA AND H2BA
--RC-- +-----------------------------7yqk_C +-7 --RG-- ! +-----------------------------8upf_G ! --RG-- ! +8txv_G ! +----------------2 --RARA ! ! ! +6a5l_g --8 +-4 +-1 HGRG-- ! ! ! +8rbx_V ! ! ! --RT-- ! +-----5 +-----------------6px1_A ! ! ! --RT-- ! ! ! +-----------8u14_G +---6 +-------3 --RC-- ! +-----------7ux9_E ! --RA-- +-------------------------7e9c_F |
> 3zkc_A:CRYSTAL STRUCTURE OF THE MASTER REGULATOR FOR BIOFILM FORMATION SINR IN COMPLEX WITH DNA.
--SGAAKGSGYGST--RTQG---- L +3zkc_A +--------------1 QTET--QASG--------ITNG-- L +-----2 +7jvt_D ! ! ----SGKGSCQTSTRG-------- L --3 +--------------6w1a_A ! ----NTQASAHTSAQT----TTPG L +--------------------8pi8_B |
> 3zp5_A:CRYSTAL STRUCTURE OF THE DNA BINDING ETS DOMAIN OF THE HUMAN PROTEIN FEV IN COMPLEX WITH DNA
------DCKT--RG----RGYA----KA---- L +5jvt_A +--------------------1 ------DCKT--RGST--RGYA---------- L +-------3 +4bnc_A ! ! ----------RGNT--RGSTAT--RA------ L +-5 +---------------------2o6g_G ! ! ------QCKT--RGAT--RGNT---------- L ! +-----------------------------8smh_F +-6 --KTHG-------------------------- ! ! +--------5hdn_C ! ! +------------2 ------NCTTNA------VTNT---------- L --7 +-------4 +--------1pp7_U ! ! TT----KATTQTTG----LTRT----KAFTYT L ! +---------------------2p7c_B ! ----------NAST--RGHT--STFT------ L +-----------------------------1vtn_C |
> 3zpl_B:CRYSTAL STRUCTURE OF SCO3205, A MARR FAMILY TRANSCRIPTIONAL REGULATOR FROM STREPTOMYCES COELICOLOR, IN COMPLEX WITH DNA
NASTRGHTSTFT-- L +------1vtn_C +-------------1 NASTRTHTSTLT-- L +--------2 +------4lg0_A ! ! --RC--YG----KT --3 +--------------------2acj_B ! NGSARGHGSC---- L +-----------------------------6el8_A |
> 4aik_A:CRYSTAL STRUCTURE OF ROVA FROM YERSINIA IN COMPLEX WITH AN INVASIN PROMOTER FRAGMENT
----RGSTRTSTHG----------RA-- L +---------------3zpl_B +-----2 --DCLT--AGTTRG----RG----RA-- L ! ! +5h3r_A +-------3 +---------------1 ------------RC--YG----KT---- ! ! +2acj_B +-4 ! TT----KATTQTTG--LTRTKA--FTYT L ! ! +---------------------2p7c_B --5 ! ----------------YG---------- ! +-----------------------------3eyi_B ! ----------NCTTNAVTNT-------- L +-----------------------------1pp7_U |
> 4awl_B:THE NF-Y TRANSCRIPTION FACTOR IS STRUCTURALLY AND FUNCTIONALLY A SEQUENCE SPECIFIC HISTONE
----RA-- +-----------------------------7e9c_F +-5 ----RT-- +-6 +-----------------------------6px1_A ! ! ----RC-- +-7 +-----------------------------7ux9_E ! ! ----RG-- ! +-----------------------------8upf_G ! ----RT-- --8 +8u14_G ! +---------3 HGRTRG-- ! ! +8rbx_V +------------------4 ----RARA ! +6a5l_g ! +-1 ----RG-- +----------2 +8txv_G ! ----RC-- +7yqk_C |
> 4awl_C:THE NF-Y TRANSCRIPTION FACTOR IS STRUCTURALLY AND FUNCTIONALLY A SEQUENCE SPECIFIC HISTONE
--RT-- +8u14_G +------------------1 --RG-- ! +8upf_G ! --RG-- +-5 +8txv_G ! ! +-------------3 --RC-- ! ! ! +7yqk_C ! +---4 --RARA +--6 ! +6a5l_g ! ! +--------------2 HGRG-- ! ! +8rbx_V +-7 ! --RA-- ! ! +------------------7e9c_F --8 ! --RC-- ! +---------------------7ux9_E ! --RT-- +----------------------6px1_A |
> 4cyc_A:CRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND UBDA MOTIFS
RT----IAQCNAMG---- L +---1b72_A +---4 RT--QTVAQTNA------ L ! ! +8osb_E ! +---1 RA----IAQTNA------ L +---5 +5ego_B ! ! RT----VTKGNA--KA-- L ! ! +-2lkx_A +------6 +-----3 RT----NT--NA------ L ! ! +-1b72_B ! ! ------NCICNARGRG-- L +--------7 ! +4xrm_B ! ! +----------2 --RT--NT--NAIARG-- L ! ! +4cyc_B +-8 ! RC----IAQCNAYC---- L ! ! +------------------3rkq_B --9 ! ------VTCCNAQA--RT L ! +---------------------------8g87_X ! ------------YCFAKC L +---------------------------6pe2_B |
> 4g92_B:CCAAT-BINDING COMPLEX FROM ASPERGILLUS NIDULANS WITH DNA
----RA-- +-----------------------------7e9c_F +-6 ----RC-- +-7 +-----------------------------7ux9_E ! ! ----RT-- ! +-----------------------------6px1_A ! ----RG-- ! +8txv_G --8 +---------2 ----RG-- ! ! +8upf_G ! +--4 ----RT-- ! ! ! +8u14_G ! ! +--------3 ----RARA +----------------5 ! +6a5l_g ! +-1 ----RC-- ! +7yqk_C ! HGRTRG-- +------------8rbx_V |
> 4g92_C:CCAAT-BINDING COMPLEX FROM ASPERGILLUS NIDULANS WITH DNA
RG------ +-----------------------------7ccr_H ! ----RARA ! +6a5l_g ! +-1 ----RG-- ! +----------2 +8txv_G ! ! ! ----RG-- ! +---4 +8upf_G --9 ! ! --HGRG-- ! +---5 +----------8rbx_V ! ! ! ----RT-- ! ! ! +8u14_G ! +--6 +-------------3 ----RC-- ! ! ! +7yqk_C ! +-7 ! ----RA-- ! ! ! +------------------7e9c_F +------8 ! ----RC-- ! +---------------------7ux9_E ! ----RT-- +----------------------6px1_A |
> 4h0e_A:CRYSTAL STRUCTURE OF MUTANT ORR3 IN COMPLEX WITH NTD OF ARAR
VTSARGTA----RT-------------- L +------------------------6za3_B +-2 --EGRTRGRG--YT-------------- L ! ! +------------------4yo2_A +--3 +-----1 --------------RC----YG--KT-- ! ! +------------------2acj_B +-4 ! --ITRGECSC--SGKG------------ L ! ! +--------------------------5i2d_R +-5 ! --------------------YG------ ! ! +-----------------------------3eyi_B --6 ! --RG----DTVT----ST--------WT L ! +-----------------------------6lxn_A ! ------------NAST--RTHTST---- L +-----------------------------3l2c_A |
> 4hf1_A:CRYSTAL STRUCTURE OF ISCR BOUND TO ITS PROMOTER
TT------KATTQTTGLTRTKA--FTYT L +-----2p7c_B +-----------------------1 --------------RCYG----KT---- +-2 +-----2acj_B ! ! ----------------YG---------- +-3 +-----------------------------3eyi_B ! ! --VTSARGTA--RT-------------- L --4 +-----------------------------6za3_B ! ----EGRTRGRGYT-------------- L +-----------------------------4yo2_A |
> 4hly_B:THE COMPLEX CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF VIRF-1 FROM THE ONCOGENIC KSHV WITH DNA
HTLT----RGNT--RGSTATRA-- L +-----------------------------2o6g_G +-2 ----DCKT--RG----RGYA--KA L ! ! +5jvt_A --3 +----------------------------1 ----DCKT--RGST--RGYA---- L ! +4bnc_A ! ----QCKT--RGAT--RGNT---- L +-----------------------------8smh_F |
> 4hqe_A:THE CRYSTAL STRUCTURE OF QSRR-DNA COMPLEX
------RGSTRTSTHG--------------RA-- L +3zpl_B +---1 ------------NASTRGHT--STFT-------- L +-----------3 +1vtn_C ! ! ------------NASTRTHT--STLT-------- L +----5 +---4lg0_A ! ! TT------KATTQTTG--LTRT----KA--FTYT L +-6 +---------------2p7c_B ! ! ------------NASTRGHT--STLT-------- L ! ! +------7cby_C +------7 +-------------4 ------------NASTRTHT--ST---------- L ! ! +------3l2c_A ! ! ----DCLT--AGTTRG----RG--------RA-- L +-8 ! +5h3r_A ! ! +----------------------2 --------------RC--YG--------KT---- ! ! +2acj_B --9 ! ------------------YG-------------- ! +-----------------------------3eyi_B ! --VTSARGTA--RT-------------------- L +-----------------------------6za3_B |
> 4i2o_B:THE STRUCTURE OF FIXK2 FROM BRADYRHIZOBIUM JAPONICUM
--HT--STAT--STRG-------------- L +-------------------------5lej_A +-3 TT----KATT--QTTG--LTRTKA--FTYT L ! ! +-----2p7c_B ! +-------------------2 --------------RC--YG----KT---- +-4 +-----2acj_B ! ! ----RT----VG--RT-------------- ! ! +8h40_X --5 +---------------------------1 --ITRGECSC--SGKG-------------- L ! +5i2d_R ! ------DCKT----RGSTRGYA-------- L +-----------------------------4bnc_A |
> 4iht_D:CRYSTAL STRUCTURE OF BENM_DBD/BENA SITE 1 DNA COMPLEX
LTNTHG--RTYTPT------------ L +-----6qil_A +-----------------------1 --------------RC--YG--KT-- +-2 +-----2acj_B ! ! --STRGQTQAST--------HG--KT L --3 +-----------------------------7t8k_B ! ------KGTGKANGYAST-------- L +-----------------------------1zlk_A |
> 4iqr_B:MULTI-DOMAIN ORGANIZATION OF THE HNF4ALPHA NUCLEAR RECEPTOR COMPLEX ON DNA
--EAKG--KTRG-- L +-----------------------------4umm_A ! CAECKG--KGRG-- L ! +----1cit_A --5 +------------2 ----KGVT--RG-- L ! +-------3 +----2c7a_B ! ! ! --ECKGAG--RG-- L +---4 +-----------------4ond_A ! --ECKGAGKGRG-- L ! +1hcq_E +------------------------1 --ECKGAG--KTRG L +4aa6_B |
> 4iri_A:AUTO-INHIBITED ERG ETS DOMAIN-DNA COMPLEX
DCKT--RG----RGYA----KA L +5jvt_A +--------------------1 DCKT--RGST--RGYA------ L +-------2 +4bnc_A ! ! ------NT--RGSTAT--RA-- L +-3 +---------------------2o6g_G ! ! QCKT--RGAT--RGNT------ L --4 +-----------------------------8smh_F ! ----NAST--RGHT--STFT-- L +-----------------------------1vtn_C |
> 4j19_B:STRUCTURE OF A NOVEL TELOMERE REPEAT BINDING PROTEIN BOUND TO DNA
RARA--IAQTNA---- L +-5ego_B +--------------1 --RT--NT--NAIARG L +------------2 +-1b72_B ! ! ----RTNT--NAIARG L --3 +----------------4cyc_B ! RCRT--VTQTNA--RG L +-----------------------------8ejp_B |
> 4jcy_A:CRYSTAL STRUCTURE OF THE RESTRICTION-MODIFICATION CONTROLLER PROTEIN C.CSP231I OR OPERATOR COMPLEX
--SG--AAKGSGYG--ST--RTQG---- L +3zkc_A +--------------1 QTET----QASG----------ITNG-- L +-----2 +7jvt_D ! ! ------SGKGSCQT--STRG-------- L --3 +--------------6w1a_A ! ----NTQASAHT--SAQT------TTPG L +--------------------8pi8_B |
> 4kdp_B:TCAR-SSDNA COMPLEX CRYSTAL STRUCTURE REVEALS THE NOVEL SSDNA BINDING MECHANISM OF THE MARR FAMILY PROTEINS
--DCLT--AGTTRG--RG--RA---- L +-----------------------------5h3r_A +-1 ------ST--STHG------RA---- L +-2 +-----------------------------3zpl_B ! ! TT----KATTQTTGLTRTKA--FTYT L --3 +-----------------------------2p7c_B ! --------------YG---------- +-----------------------------3eyi_B |
> 4lg0_B:STRUCTURE OF A TERNARY FOXO1-ETS1 DNA COMPLEX
QCKTRGAT--RGNT---- L +-----------------------------8smh_F ! DCKTRGST--RGYA---- L --3 +4bnc_A ! +--------------------1 DCKTRG----RGYA--KA L +-------2 +5jvt_A ! ----NT--RGSTATRA-- L +---------------------2o6g_G |
> 4lln_I:CRYSTAL STRUCTURE OF S. AUREUS MEPR-DNA COMPLEX
--DCLT--AGTTRG----RG----RA---- L +5h3r_A +---------------1 ------------RC--YG----KT------ +-----2 +2acj_B ! ! ----RGSTRTSTHG----------RA---- L +-------3 +---------------3zpl_B ! ! TT----KATTQTTG--LTRTKA----FTYT L +-4 +---------------------2p7c_B ! ! ----RGTCTA--RGNT--------RT---- L +-5 +-----------------------------4fx4_B ! ! ----------------YG------------ --6 +-----------------------------3eyi_B ! --ITRGECSCSGKG---------------- L +-----------------------------5i2d_R |
> 4mhg_A:CRYSTAL STRUCTURE OF ETV6 BOUND TO A SPECIFIC DNA SEQUENCE
DCKT--RG----RGYAKA L +5jvt_A +--------------------1 DCKT--RGST--RGYA-- L +-------2 +4bnc_A ! ! ----RGNT--RGSTAT-- L --3 +---------------------2o6g_G ! QCKT--RGAT--RGNT-- L +-----------------------------8smh_F |
> 4mtd_D:ZINC UPTAKE REGULATOR COMPLEXED WITH ZINC AND DNA
--YAKTPTPG----YTRG-------------------- L +--------------4mtd_D +-2 TT------KATT--QTTG----LTRT----KA--FTYT L ! +--------------2p7c_B +---------3 ----------------------YG-------------- ! ! +---3eyi_B +-4 +------------1 ----------------RC----YG--------KT---- ! ! +---2acj_B --5 ! ----RG------VT----STRG---------------- L ! +--------------------------6lxn_A ! ----------------ST--RGHT--STLT-------- L +---------------------------7cby_C |
> 4nhj_A:CRYSTAL STRUCTURE OF KLEBSIELLA PNEUMONIAE RSTA DNA-BINDING DOMAIN IN COMPLEX WITH RSTA BOX
HT--RTITYT------ L +-----------------------------4kfc_B +-1 RGTCDCVA--RGRCRC L +-2 +-----------------------------8hih_Q ! ! --STTAQC--ST---- --3 +-----------------------------8b4b_W ! KGTGKANGYAST---- L +-----------------------------1zlk_A |
> 4oln_B:ANCESTRAL STEROID RECEPTOR 1 IN COMPLEX WITH ESTROGEN RESPONSE ELEMENT DNA
----KGVTRG-- L +-----------------------------2c7a_B ! --ECKGAGKGRG L ! +1hcq_E ! +--------------1 --ECKGAGRG-- L --5 +---2 +4ond_A ! ! ! --EAKG--KTRG L ! +--3 +---------------4umm_A ! ! ! --ECKGAGKTRG L +------4 +-------------------4aa6_B ! CAECKG--KGRG L +----------------------1cit_A |
> 4on0_B:CRYSTAL STRUCTURE OF NOLR FROM SINORHIZOBIUM FREDII IN COMPLEX WITH OLIGO AA DNA
--DCLT--AG--TTRG------RG------RA---- L +5h3r_A +---------------1 --------------RC----YG----KT-------- +----2 +2acj_B ! ! ----RGSTRT--STHG--------------RA---- L +--3 +---------------3zpl_B ! ! --------------------YG-------------- +-----4 +--------------------3eyi_B ! ! TT----KATT--QTTG----LTRTKA------FTYT L +-5 +-----------------------2p7c_B ! ! --ITRGECSC--SGKG-------------------- L --6 +-----------------------------5i2d_R ! --RG------VT----STRG--------WT------ L +-----------------------------6lxn_A |
> 4qtr_D:COMPUTATIONAL DESIGN OF CO-ASSEMBLING PROTEIN-DNA NANOWIRES
------NT--NAIARG L +-----------------------------1b72_B +-2 ------IAQTNA---- L ! ! +---5ego_B +-3 +-------------------------1 RT----NT--NAIARG L ! ! +---4cyc_B --4 ! ------VTQTNA--RG L ! +-----------------------------8ejp_B ! --STTAQCST------ +-----------------------------8b4b_W |
> 4rb3_D:CRYSTAL STRUCTURE OF MAGNETOSPIRILLUM GRYPHISWALDENSE MSR-1 FUR-MN2+- FEOAB1 OPERATOR
KA----SG--AT----YTRG---------------------- L +4rb3_D +-------------3 ----YAKTPTPG----YTRG---------------------- L ! +4mtd_D +----7 --TT------KATT--QTTG----LTRT----KA----FTYT L ! ! +-----2p7c_B +----9 +--------6 ------------------RC----YG--------KT------ ! ! +-----2acj_B ! ! --------------VT----STRG------------WT---- L ! +-------------------6lxn_A +--10 ----------------NAST--RGHT--STLT---------- L ! ! +7cby_C ! ! +---4 ----------------NAST--RGHT--STFT---------- L ! ! ! +1vtn_C +-11 +-------------------5 ----------------NAST--RTHT--ST------------ L ! ! ! +3l2c_A ! ! +----1 ----------------NAST--RTHT--STLT---------- L ! ! +4lg0_A ! ! ------------------NT------NA--IARG-------- L -12 +----------------------------4cyc_B ! ----------------QTVA----QTNA-------------- L ! +8osb_E ! +----------------2 ------------------IA----QTNA-------------- L +-----------8 +5ego_B ! ------------------IA----QCNA--YC---------- L +----------------3rkq_B |
> 4rul_A:CRYSTAL STRUCTURE OF FULL-LENGTH E.COLI TOPOISOMERASE I IN COMPLEX WITH SSDNA
------------------------------------------------RGAGTGFGYGKGTGNGRTFTYTTTRAAGFGAAFAPTRATGRCYTSTST L +----------4rul_A +--------1 ------HCDC--KT--RCRC--RCYTSTPT--WT--PTKTQTRTSTTG------------------------------------------------ L +----2 +----------6cqi_A ! ! ----RTHCDGRT----RCRC--RCYTSTPT--WTKAPAKT--RTSTTG------------------------------------------------ L --3 +-------------------6pcm_B ! ECKC----------DC----DCWCIG--RGRC------VC--RC--TT------------------------------------------------ L +------------------------2o5c_B |
> 4u0y_B:CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAINS OF YVOA IN COMPLEX WITH PALINDROMIC OPERATOR DNA
--VTSARGTA--RT------ L +-------------------6za3_B +----1 --------------RCYGKT +----2 +-------------------2acj_B ! ! ----ITRGECSCSGKG---- L +-3 +------------------------5i2d_R ! ! RC--EGRTRGRGYT------ L --4 +-----------------------------4yo2_A ! ----------------YG-- +-----------------------------3eyi_B |
> 4umm_E:THE CRYO-EM STRUCTURE OF THE PALINDROMIC DNA-BOUND USP-ECR NUCLEAR RECEPTOR REVEALS AN ASYMMETRIC ORGANIZATION WITH ALLOSTERIC DOMAIN POSITIONING
CAECKG--KGRG-- L +---1cit_A +-------------2 --EAKG--KTRG-- L +------4 +---4umm_A ! ! ----KGVT--RG-- L ! +-----------------2c7a_B --5 --ECKGAGKGRG-- L ! +-1hcq_E ! +-------------1 --ECKGAG--RG-- L +--------3 +-4ond_A ! --ECKGAG--KTRG L +---------------4aa6_B |
> 4uno_A:CRYSTAL STRUCTURE OF THE ETS DOMAIN OF HUMAN ETV5 IN COMPLEX WITH DNA
DCKTRGSTRGYA---- L +4bnc_A +--------------------1 DCKTRG--RGYA--KA L +-------2 +5jvt_A ! ! ----RGNTSTATRA-- L --3 +---------------------2o6g_G ! QCKTRGATRGNT---- L +-----------------------------8smh_F |
> 4uqm_A:CRYSTAL STRUCTURE DETERMINATION OF URACIL-DNA N-GLYCOSYLASE (UNG) FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH DNA - NEW INSIGHTS INTO THE ROLE OF THE LEUCINE-LOOP FOR DAMAGE RECOGNITION AND REPAIR
--------PALA-- +4uqm_A +--1 --------PTLA-- +--------------------2 +1emh_A ! ! KT----TTRA---- L +--3 +---4yig_E ! ! ----RA--RCQTNT L --4 +------------------------2dp6_A ! VGRG----PG---- +---------------------------1oe4_B |
> 4wuh_B:CRYSTAL STRUCTURE OF E. FAECALIS DNA BINDING DOMAIN LIAR WILD TYPE COMPLEXED WITH 22BP DNA
--KGTG--KANGYAST-- L +-----------------------------1zlk_A +-1 ----ST--TAQC--ST-- +-2 +-----------------------------8b4b_W ! ! NTHG--RT--YTPT---- L --3 +-----------------------------6qil_A ! --RGTC--DCVA--RGRC L +-----------------------------8hih_Q |
> 4wzs_A:CRYSTAL STRUCTURE OF THE MOT1 N-TERMINAL DOMAIN IN COMPLEX WITH TBP AND NC2 BOUND TO A PROMOTER DNA FRAGMENT
RG +8txv_G +-1 RG +----------------2 +8upf_G ! ! RA +-4 +6a5l_g ! ! RT +-5 +----------------7zs9_e ! ! RT ! ! +-----------8u14_G --6 +------3 RC ! +-----------7ux9_E ! RT +--------------------6px1_A |
> 4wzs_B:CRYSTAL STRUCTURE OF THE MOT1 N-TERMINAL DOMAIN IN COMPLEX WITH TBP AND NC2 BOUND TO A PROMOTER DNA FRAGMENT
----RA---- +-----------------------------7e9c_F ! ------KG-- ! +7nkx_f --7 +----------------3 ----RA--RA ! ! ! +6a5l_g ! ! +-1 ----RG---- ! ! +8upf_G +-----------6 KT-------- L ! +------7cvo_A ! +-------4 HGRTRG---- ! ! +------8rbx_V +--5 ----RT---- ! +7kbd_C +--------------2 ----RC---- +7yqk_C |
> 4xrm_B:HOMODIMER OF TALE TYPE HOMEOBOX TRANSCRIPTION FACTOR MEIS1 COMPLEXES WITH SPECIFIC DNA
--------IAQTNA------ L +-5ego_B +--------------1 RT------NT--NA------ L +------------2 +-1b72_B ! ! --RT----NT----NAIARG L +-3 +----------------4cyc_B ! ! RT------VTQTNARG---- L --4 +-----------------------------8ejp_B ! ----STTAQCST-------- +-----------------------------8b4b_W |
> 4xrs_G:HETERODIMERIC COMPLEX OF TRANSCRIPTION FACTORS MEIS1 AND DLX3 ON SPECIFIC DNA
RA------------IAQTNA---- L +-5ego_B +---------------------1 RT------------NT--NAIARG L ! +-1b72_B +-----3 RT------------VTQTNA--RG L ! ! +---8ejp_B --4 +-------------------2 --RT----------NT--NAIARG L ! +---4cyc_B ! ----STRGQTQAST---------- L +-----------------------------7t8k_B |
> 5a78_B:CRYSTAL STRUCTURE OF THE HOMING ENDONUCLEASE I-CVUI IN COMPLEX WITH I- CREI TARGET (C1221) IN THE PRESENCE OF 2 MM MG REVEALING DNA NOT CLEAVED
STITQAKGRG--STNTQTSTATTC------YT--SC--VCDTRGSTKGTG L +-----------------------------3mxb_B +-1 SALTRGRGNT--KT--STECQGTAHAKA----ST--------KGTC---- L +-2 +-----------------------------6uwj_A ! ! --MTHTEC--------RGRGQGKG----NT--------ET--KTRG---- L +-3 +-----------------------------4z1x_A ! ! ST--------SC--LAHTRTTTMT----LT--NC----YA----YA---- L --4 +-----------------------------7rcf_A ! YTSTTC----------YTTC--EC------RG----IA----RGRG---- L +-----------------------------2qoj_Z |
> 5ay8_E:CRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CONTAINING H3.Y
RG---------- +8jh2_e +------------------1 RG------RT-- +--6 +6px1_A ! ! --------RA-- ! +------------------7e9c_F +--9 RGLC-------- ! ! +8bvw_e ! ! +------------------4 --------RC-- ! +-7 +7ux9_E ! ! --------RC-- -10 +-------------------7yqk_C ! --------RT-- ! +8u14_G ! +--------------------2 --------RG-- ! ! +8upf_G +---8 --------RG-- ! +8txv_G +-------------------5 --------RARA ! +6a5l_g +-3 ----HGRTRG-- +8rbx_V |
> 5cbz_E:ANCMR DNA BINDING DOMAIN - (+)GRE COMPLEX
----KGVT--RG-- L +-----------------------------2c7a_B +-4 --EAKG--KTRG-- L ! +-----------------------------4umm_A ! CAECKG--KGRG-- L --5 +-----1cit_A ! +-----------------2 --ECKGAG--RG-- L ! ! +-----4ond_A +-----3 --ECKGAGKGRG-- L ! +1hcq_E +----------------------1 --ECKGAGKT--RG L +4aa6_B |
> 5ed4_A:STRUCTURE OF A PHOP-DNA COMPLEX
----RG--DTVTSTRG------WT---- L +------------------------6lxn_A ! ------------YG-------------- +----3 +---3eyi_B ! ! +-------------1 ----------RCYG------KT------ ! +------2 +---2acj_B --4 ! --TTKATTQTTG----LTRT----FTYT L ! +-----------------2p7c_B ! ET-------------------------- L +-----------------------------7aud_E |
> 5gtc_H:CRYSTAL STRUCTURE OF COMPLEX BETWEEN DMAP-SH CONJUGATED WITH A KAPOSI'S SARCOMA HERPESVIRUS LANA PEPTIDE (5-15) AND NUCLEOSOME CORE PARTICLE
----RARA +6a5l_g +-1 ----RG-- +---------2 +8txv_G ! ! ----RG-- +--------6 +8upf_G ! ! ----RC-- +-----9 +---------7yqk_C ! ! ----RA-- ! +------------------7e9c_F ! ----RT-- -11 +8u14_G ! +--------------------5 --HGRG-- ! ! +8rbx_V ! ! ----RA-- ! ! +7xsx_a +-10 +--------------3 ----RC-- ! ! +7ux9_E ! +-7 LC------ ! ! ! +8bvw_e +------8 +--------------4 ----RT-- ! +6px1_A ! LA--RG-- +--------------7unc_a |
> 5hdn_C:CRYSTAL STRUCTURE OF HEAT SHOCK FACTOR1-DBD COMPLEX WITH DS-DNA AND TTT
--KTHG---------------- +--------5hdn_C +----------2 ------NCTTNAVTNT------ L ! +--------1pp7_U +-----3 ------DCKT--RGYAKA---- L ! ! +5jvt_A +-4 +------------------1 ------DCKT--RGYA------ L ! ! +4bnc_A --5 ! ------QCKT--RGNT------ L ! +-------------------------8smh_F ! TT----KATG--LTRTKAFTYT L +--------------------------2p7c_B |
> 5hlg_E:STRUCTURE OF REDUCED ABFR BOUND TO DNA
----RGSTRTSTHG--------RA---- L +---------------3zpl_B +-----2 --DCLT--AGTTRG--RG----RA---- L ! ! +5h3r_A +-------3 +---------------1 ------------RCYG----KT------ ! ! +2acj_B --4 ! TT----KATTQTTGLTRTKA----FTYT L ! +---------------------2p7c_B ! --------------YG------------ +-----------------------------3eyi_B |
> 5hod_A:STRUCTURE OF LHX4 TRANSCRIPTION FACTOR COMPLEXED WITH DNA
RARA--IAQTNA---- L +-5ego_B +---------------------1 --RT--NT--NAIARG L ! +-1b72_B --3 RCRT--VTQTNA--RG L ! +---8ejp_B +-------------------2 ----RTNT--NAIARG L +---4cyc_B |
> 5jlw_D:ANTPHD WITH 15BP DNA DUPLEX R-MONOTHIOATED AT CYTIDINE-8
RA------------IAQTNA---- L +-5ego_B +--------------1 RT------------NT--NAIARG L +------------2 +-1b72_B ! ! --RT----------NT--NAIARG L +-3 +----------------4cyc_B ! ! RT------------VTQTNA--RG L +-4 +-----------------------------8ejp_B ! ! ----STRGQTQAST---------- L --5 +-----------------------------7t8k_B ! ----------STTAQCST------ +-----------------------------8b4b_W |
> 5jvt_A:CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF TRANSCRIPTION FACTOR FLI1 IN COMPLEX WITH AN 11-MER DNA GACCGGAAGTG
------------DCKT--RG--RGYA----KA L +5jvt_A +--------------1 ------------DCKT--RGATRCYA------ L +----2 +5e8i_D ! ! ------------DCKT--RGSTRGYA------ L +--3 +---------------4bnc_A ! ! --------------KT--RG--RAYA------ L +-4 +--------------------6vge_A ! ! ------------DCKT--RG--RGYA------ L +-5 +-----------------------1dux_F ! ! ------------ECKT--RGATRGNT------ L +-6 +------------------------1pue_E ! ! --------------KT--RG--RGYA------ L +-7 +-------------------------3wts_C ! ! --------------KT--RG--RGYA------ L +-8 +--------------------------4lg0_B ! ! ------------------TT--CT--NGKG-- L +-9 +---------------------------7oot_B ! ! ----RC-------------------------- +-10 +---------------------------7cow_T ! ! NC----------------TT--CT--NGKG-- L +-11 +---------------------------7rh2_B ! ! ------LTNTHG--RTYTPT------------ L +-12 +----------------------------6qil_A ! ! --------------------NTCT--NGST-- L -13 +----------------------------1if1_B ! --RC---------------------------- +----------------------------6l9z_S |
> 5k5q_D:STRUCTURE OF ASPA-DNA COMPLEX: NOVEL CENTROMERE BINDNG PROTEIN- CENTROMERE COMPLEX
--------RGSTRTSTHG----------------RA---- L +3zpl_B +---1 ----------------NAST--HT--STFT---------- L +-----------------3 +1vtn_C ! ! --------------NAST--RTHT--STLT---------- L +-7 +---4lg0_A ! ! ------DCLT--AGTTRG------RG--------RA---- L ! ! +5h3r_A +-8 +---------------------2 ----------------RC----YG--------KT------ ! ! +2acj_B ! ! --TT------KATTQTTG----LTRT----KA----FTYT L ! ! +-------2p7c_B ! +---------------5 ----------DCKT--RG----RGYA----KA-------- L +---9 +-------5jvt_A ! ! ----------------NAST--HT--STLT---------- L ! ! +------7cby_C ! ! +-----------4 --------------NAST--RTHT--ST------------ L +-10 +------6 +------3l2c_A ! ! ! ----LANTHGTTETYTRG---------------------- L ! ! +------------------1f4k_B +-11 ! ----------------------YG---------------- ! ! +-----------------------------3eyi_B -12 ! RC----EGRTRGRGYT------------------------ L ! +-----------------------------4yo2_A ! ----------NCTTNA------VTNT-------------- L +-----------------------------1pp7_U |
> 5kbj_B:STRUCTURE OF REP-DNA COMPLEX
------------YG-------- +-----------------------------3eyi_B +-1 ----KATTQTTGLTRTKAFTYT L +-2 +-----------------------------2p7c_B ! ! --TTSGLTYA------------ L --3 +-----------------------------2nra_C ! RG-------------------- +-----------------------------8ity_V |
> 5krb_G:GCNF DNA BINDING DOMAIN - OCT4 DR0 COMPLEX
CAECKG--KGRG--RTRT L +---1cit_A +-------------2 --EAKG--KTRG------ L +---3 +---4umm_A ! ! ----KGVT--RG------ L +----4 +-----------------2c7a_B ! ! --ECKGAG--RG------ L --5 +---------------------4ond_A ! --ECKGAGKGRG------ L ! +1hcq_E +-------------------------1 --ECKGAG--KTRG---- L +4aa6_B |
> 5n8o_A:CRYO EM STRUCTURE OF THE CONJUGATIVE RELAXASE TRAI OF THE F/R1 PLASMID SYSTEM
----------------------------VTETRTHTPTVT-- L +-----------------------------6sjf_D +-3 ----------------------------------DT----RT L ! +-----------------------------4n0o_E +-4 --------------KATT------------------------ L ! ! +--------2p7c_B ! +--------------------2 ------RGHTSTFT---------------------------- L +-5 +--------1vtn_C ! ! --SGAT------------------------------------ L ! ! +4rb3_D --6 +----------------------------1 ------------------KTPTPGYTRG-------------- L ! +4mtd_D ! TT---------------------------------------- +-----------------------------8pw0_A |
> 5o6i_A:STRUCTURES AND DYNAMICS OF MESOPHILIC VARIANTS FROM THE HOMING ENDONUCLEASE I-DMOI
YAKGLG--RT----------QG--EC----------------------------------RT----KT L +6x1j_A +-------------------------1 YGRGRG--------------QG--EC------------------------------------YCNGKG L +---2 +1r7m_B ! ! CGRG--ST--TTKARGQTFA--QG--NG----------------HC--SC----LAQGRGQA------ L +-3 +-------------------------4yit_A ! ! SAYCLC--------------------------------NA--RG----RG--DTIC--RG-------- L +-4 +-----------------------------2fld_B ! ! STIT----------QTST--AT--TC--------------------YT--------DTRGST------ L +-5 +-----------------------------3mxb_B ! ! SAIAQG--------QA----QA--TC------------------------------------------ L +-6 +-----------------------------1t9i_B ! ! ----------------------------ACSTICICRCKCIC--EC----------RC---------- L +-7 +-----------------------------1zzi_A ! ! STIGRG--------LTEC--ST--KG------------------TT--NA------MGRTSC------ L +-8 +-----------------------------5t2n_A ! ! ST--SC----RG--HTRT--TT--MT------------------LT--NC----YA----YA------ L --9 +-----------------------------7rcf_A ! SGIG----------RGQG--DG--TA----------------YC--AT--SC--VCKGRG-------- L +-----------------------------6fb0_A |
> 5o9g_E:STRUCTURE OF NUCLEOSOME-CHD1 COMPLEX
RG--RT-- +-----------------------------6px1_A ! RG------ ! +8jh2_e ! +-----------------2 ----RC-- ! +---5 +7ux9_E --9 ! ! ----RA-- ! +-6 +------------------7e9c_F ! ! ! ----RG-- ! +--7 +----------------------8upf_G ! ! ! ----RC-- +-8 +------------------------7yqk_C ! ----RT-- ! +----------8u14_G +----------------4 ----RG-- ! +8txv_G +---------3 ----RARA ! +6a5l_g +-1 --HGRG-- +8rbx_V |
> 5o9g_F:STRUCTURE OF NUCLEOSOME-CHD1 COMPLEX
--RA-- +-----------------------------7e9c_F ! --RT-- ! +8u14_G ! +--------------1 --RG-- --8 +------4 +8upf_G ! ! ! --RC-- ! ! +--------------7yqk_C ! ! --RG-- ! ! +8txv_G +-------7 +----------------3 --RARA ! ! ! +6a5l_g ! +--5 +-2 HGRG-- ! ! ! +8rbx_V +-6 ! --RC-- ! +-----------------7ux9_E ! --RT-- +--------------------6px1_A |
> 5o9g_G:STRUCTURE OF NUCLEOSOME-CHD1 COMPLEX
------RG-- +-----------------------------8upf_G +-9 ------RC-- ! +-----------------------------7yqk_C ! ------RARA ! +6a5l_g ! +-1 ------RG-- ! +-----------------3 +8txv_G ! ! ! --HGRTRG-- -10 +-6 +8rbx_V ! ! ! ------RT-- ! ! ! +-----------8u14_G ! +---7 +------5 ------RC-- ! ! ! +-----------7ux9_E ! ! ! ------RGRG ! ! ! +------8kcb_A +----8 +-------------4 ------RA-- ! +------7e9c_F ! LC-------- ! +8bvw_e +------------------------2 ------RT-- +6px1_A |
> 5t5k_E:STRUCTURE OF HISTONE-BASED CHROMATIN IN ARCHAEA
----RA-- +8rbx_M +--------------2 ----RT-- +-6 +6px1_A ! ! ----RC-- ! +--------------7ux9_E +------7 ----RT-- ! ! +----------8u14_G ! ! ! ----RGRG ! +-----5 +8kcb_A ! ! +-1 ----RARA +---9 +----------3 +6a5l_g ! ! ! HGRTRG-- ! ! +8rbx_V ! ! ----RG-- ! ! +8txv_G -10 ! +------------------4 ----RC-- ! +---8 +7yqk_C ! ! ----RA-- ! +-------------------7e9c_F ! ----RG-- +---------------------------8upf_G |
> 5v8f_E:STRUCTURAL BASIS OF MCM2-7 REPLICATIVE HELICASE LOADING BY ORC-CDC6 AND CDT1
------NAST--HTSTFT-- L +-----------1vtn_C +-----------------1 ------RC----YG----KT +-2 +-----------2acj_B ! ! STTAQC----ST-------- --3 +-----------------------------8b4b_W ! ----NGSA--RGHGSC---- L +-----------------------------6el8_A |
> 5vfx_A:STRUCTURE OF AN ACCESSORY PROTEIN OF THE PCW3 RELAXOSOME IN COMPLEX WITH THE ORIGIN OF TRANSFER (ORIT) DNA
DCKT--RGYA----KA L +5jvt_A +----------------------------1 DCKT--RGYA------ L +-2 +4bnc_A ! ! ------RGNT------ L --3 +-----------------------------8smh_F ! NASTRGHT--STFT-- L +-----------------------------1vtn_C |
> 5vmz_A:KAISO (ZBTB33) E535Q MUTANT ZINC FINGER DNA BINDING DOMAIN IN COMPLEX WITH A DOUBLE CPG-METHYLATED DNA RESEMBLING THE SPECIFIC KAISO BINDING SEQUENCE (KBS)
--TTSGRG--QCYC--NTYGQGFT--RTYG L +----------5vmz_A +----3 RGDCKG----------RGSTDCHGRG---- L ! +----------8e3e_F --4 --SGHG--RGDAETRGRG--DCHG------ L ! +6vtx_A ! +-------1 RG--ECRA--TGECRGRG----ET------ L +-------2 +5wjq_D ! EC----RG--YCKGRGQA----TC------ L +-------8sst_A |
> 5wjq_D:MOUSEZFP568-ZNF2-11 IN COMPLEX WITH DNA
RGSGHGRGYADCTACTST--LTITSTSTHTRG----RG--ECRA--TGECRGRG----ETRG--SAECRG--RGHGQT L +---------------5wjq_D +-------2 ------------------LA----TT--ECRGYG--EC----RG--YCKGRGQA----TC----SC------------ L +--3 +---------------8sst_A ! ! ----------------------------------QT----KGRGRGDCKG----------RGSTDCHG--RG------ L --4 +-----------------------8e3e_F ! --------------------------------------SGHG--RGDAETRGRG--DCHG------------------ L ! +--6vtx_A +-----------------------1 --------------------------------------TTSGRG--QCYC--NTYGQGFT------------------ L +--5vmz_A |
> 5x0y_D:COMPLEX OF SNF2-NUCLEOSOME COMPLEX WITH SNF2 BOUND TO SHL2 OF THE NUCLEOSOME
RG------ +-----------------------------7ccr_H +-9 ----RC-- ! +-----------------------------7yqk_C ! ----RG-- ! +8txv_G ! +-------1 ----RG-- ! ! +8upf_G -10 +----------5 ----RARA ! ! ! +6a5l_g ! +----7 +-------3 --HGRG-- ! ! ! +8rbx_V ! ! ! ----RA-- ! ! +------------------7e9c_F +-----8 ----RA-- ! +7xsx_a ! +------2 ----RC-- ! +------4 +7ux9_E ! ! ! ----RT-- +---------6 +------8u14_G ! ----RT-- +-------------6px1_A |
> 5x11_A:CRYSTAL STRUCTURE OF BACILLUS SUBTILIS PADR IN COMPLEX WITH OPERATOR DNA
--------------NASTRGHT--STLT------ L +7cby_C +----1 --------------NASTRGHT--STFT------ L +--------2 +1vtn_C ! ! --------------NASTRTHT--STLT------ L +----3 +-----4lg0_A ! ! RT--LANTHGTTETYTRG---------------- L +---------4 +--------------1f4k_B ! ! --TT------KATTQTTG--LTRT----KAFTYT L --5 +-------------------2p7c_B ! --------------------YG------------ +-----------------------------3eyi_B |
> 5x5l_H:CRYSTAL STRUCTURE OF RESPONSE REGULATOR ADER DNA BINDING DOMAIN IN COMPLEX WITH AN INTERCISTRONIC REGION
--RGTC--DCVA----RGRC------RC L +----------8hih_Q +------------------1 ----------------RC----YGKT-- +-2 +----------2acj_B ! ! ----HT----RTITYT------------ L +-3 +-----------------------------4kfc_B ! ! --ST--TAQC----ST------------ +-4 +-----------------------------8b4b_W ! ! ------KGTG--KANGYA--ST------ L --5 +-----------------------------1zlk_A ! LGTA--KGTA----HTRG---------- L +-----------------------------6jhe_A |
> 5xfr_B:TERNARY COMPLEX OF MTF2, DNA AND HISTONE
----NGSARGHG--SC-- L +6el8_A +-1 ----NASTRGHT--STFT L +---------------------2 +1vtn_C ! ! ----NASTRTHT--STLT L --3 +-4lg0_A ! DCKTRGST--RGYA---- L +-----------------------4bnc_A |
> 5xxp_A:CRYSTAL STRUCTURE OF CBNR_DBD-DNA COMPLEX
LTNTHG--RTYTPT------------ L +--6qil_A +--------------1 ------------NASTRGHTSTFT-- L +-----------2 +--1vtn_C ! ! --------------RC--YG----KT --3 +-----------------2acj_B ! ------KGTGKANGYAST-------- L +-----------------------------1zlk_A |
> 5yi2_J:STRUCTURE OF LACTOCOCCUS LACTIS ZITR, WILD TYPE IN COMPLEX WITH DNA
--------------RC----YG---- +-----------------------------2acj_B +-1 --NTHG--RT--YTPT--------RT L +-2 +-----------------------------6qil_A ! ! LG------TA--KGTA----HTRG-- L +-3 +-----------------------------6jhe_A ! ! ------ST--TAQC----ST------ --4 +-----------------------------8b4b_W ! ------KGTG--KANGYA--ST---- L +-----------------------------1zlk_A |
> 5z3u_A:STRUCTURE OF SNF2-NUCLEOSOME COMPLEX AT SHL2 IN ADP BEFX STATE
RG-------- +8jh2_e +---------------1 RG----RT-- +------6 +6px1_A ! ! ------RC-- +-7 +---------------7ux9_E ! ! ------RA-- +--8 +----------------------7e9c_F ! ! ------RC-- ! +------------------------7yqk_C ! ------RG-- --9 +8txv_G ! +-------2 ------RG-- ! ! +8upf_G ! +-------4 ------RARA ! ! ! +6a5l_g +-----------5 +------3 --HGRTRG-- ! +8rbx_V ! ------RT-- +---------------8u14_G |
> 5zbx_A:THE CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING HISTONE H3.1 CATD(V76Q, K77D)
RG---- +8jh2_e +---------------1 RGRT-- +------6 +6px1_A ! ! --RC-- +---7 +---------------7ux9_E ! ! --RA-- ! +----------------------7e9c_F ! --RT-- ! +8u14_G --9 +----------3 --RG-- ! ! +8upf_G ! +------------5 --RARA ! ! ! +6a5l_g ! ! ! +-2 --RG-- +--8 +---------4 +8txv_G ! ! --RG-- ! +8rbx_V ! --RC-- +-----------------------7yqk_C |
> 5zjt_E:STRUCTURE OF ABDB/EXD COMPLEX BOUND TO A 'BLACK14' DNA SEQUENCE
RA--IAQTNA---- L +-5ego_B +--------------1 RT--NT--NAIARG L +------------2 +-1b72_B ! ! --RTNT--NAIARG L --3 +----------------4cyc_B ! RT--VTQTNA--RG L +-----------------------------8ejp_B |
> 6a5l_d:RNA POLYMERASE II ELONGATION COMPLEX STALLED AT SHL(-1) OF THE NUCLEOSOME, WITH FOREIGN DNA
RG------ +-----------------------------7ccr_H +-7 ----RC-- +-8 +-----------------------------7yqk_C ! ! ----RA-- ! +-----------------------------7e9c_F ! ----RT-- ! +8u14_G ! +--------------1 ----RG-- --9 ! +8upf_G ! +---4 ----RARA ! ! ! +6a5l_g ! ! ! +-2 ----RG-- ! +-5 +-------------3 +8txv_G ! ! ! ! --HGRG-- ! ! ! +8rbx_V +--------6 ! ----RC-- ! +------------------7ux9_E ! ----RT-- +--------------------6px1_A |
> 6a5l_e:RNA POLYMERASE II ELONGATION COMPLEX STALLED AT SHL(-1) OF THE NUCLEOSOME, WITH FOREIGN DNA
RG---------- +8jh2_e +--------------1 RG------RT-- +---------8 +6px1_A ! ! --------RC-- ! +--------------7ux9_E ! --------RA-- ! +--7xsx_a ! +-------5 --------RG-- ! ! ! +8txv_G ! ! +--2 --------RG-- -12 +------6 +8upf_G ! ! ! --------RARA ! ! ! +6a5l_g ! ! +----------4 ------HGRG-- ! +---10 +8rbx_V ! ! ! --------RA-- ! ! ! +7e9c_F ! ! ! +--------------3 --------RG-- +-11 +--7 +7e9c_G ! ! --------RT-- ! +--------------8u14_G ! --RAAANA---- ! +----------------1jfi_B +-----9 --------RC-- +----------------7yqk_C |
> 6a5l_g:RNA POLYMERASE II ELONGATION COMPLEX STALLED AT SHL(-1) OF THE NUCLEOSOME, WITH FOREIGN DNA
----RG +-----------------------------8upf_G +-5 ----RC ! +-----------------------------7yqk_C ! ----RG ! +8txv_G --6 +-----------------1 HGRTRG ! +----2 +8rbx_V ! ! ! ----RA ! +-3 +------------------7e9c_F ! ! ! ----RC +---4 +-----------------------7ux9_E ! ----RT +-------------------------6px1_A |
> 6a8r_A:CRYSTAL STRUCTURE OF DUX4 HD2 DOMAIN ASSOCIATED WITH ERG DNA BINDING SITE
RA--IAQTNA---- L +-5ego_B +---------------------1 RT--NT--NAIARG L ! +-1b72_B --3 RT--VTQTNA--RG L ! +---8ejp_B +-------------------2 --RTNT--NAIARG L +---4cyc_B |
> 6ako_C:CRYSTAL STRUCTURE OF FOXC2 DBD BOUND TO DBE2 DNA
--------------NAST--RGHT--STFT----------RT L +--------------------1vtn_C +-6 --------RGSTRTSTHG----------------RA------ L ! ! +3zpl_B ! +-------------------1 --------------RC------YG--------KT-------- +-7 +2acj_B ! ! --TT------KATTQTTG----LTRT----KA----FTYT-- L ! ! +-------2p7c_B ! +--------------4 ----------DCKT--RG----RGYA----KA---------- L ! +-------5jvt_A +--9 --------------NAST--RGHT--STLT------------ L ! ! +-----7cby_C ! ! +-2 --------------NAST--RTHT--STLT------------ L ! ! +---------------3 +-----4lg0_A ! ! ! ! RT--LANTHGTTETYTRG------------------------ L +-10 +-8 +-------1f4k_B ! ! ! --------------NAST--RTHT--ST-------------- L ! ! ! +---------3l2c_A ! ! +-------------5 --------------RGNT--RGSTAT--RA------------ L -11 ! +---------2o6g_G ! ! ------------KT--RGAT--RGNT---------------- L ! +---------------------------8smh_F ! ----------------------YG------------------ +-----------------------------3eyi_B |
> 6buz_A:CRYO-EM STRUCTURE OF CENP-A NUCLEOSOME IN COMPLEX WITH KINETOCHORE PROTEIN CENP-N
--RC-- +-----------------------------7ux9_E +-8 --RT-- ! +-----------------------------6px1_A ! --RA-- ! +--7xsx_a ! +-------------3 --RA-- --9 ! +--7e9c_F ! +---6 --RARA ! ! ! +6a5l_g ! ! ! +--------------1 --RG-- ! ! +-4 +8upf_G ! ! ! --RG-- +--------7 +--------------8txv_G ! --RT-- ! +8u14_G ! +--------------2 --RC-- +----5 +7yqk_C ! HGRG-- +---------------8rbx_V |
> 6buz_H:CRYO-EM STRUCTURE OF CENP-A NUCLEOSOME IN COMPLEX WITH KINETOCHORE PROTEIN CENP-N
RG------ +-----------------------------7ccr_H ! ----RT-- ! +8u14_G ! +-------2 ----RG-- ! ! +8upf_G ! +----------4 ----RARA ! ! ! +6a5l_g --9 ! +-------1 ----RC-- ! +-5 +7yqk_C ! ! ! ----RG-- ! ! ! +8txv_G ! +-6 +-----------------3 --HGRG-- ! ! ! +8rbx_V ! +--7 ! ----RC-- ! ! ! +--------------------7ux9_E +----8 ! ----RT-- ! +---------------------6px1_A ! ----RA-- +------------------------7e9c_F |
> 6c0w_A:CRYO-EM STRUCTURE OF HUMAN KINETOCHORE PROTEIN CENP-N WITH THE CENTROMERIC NUCLEOSOME CONTAINING CENP-A
----LT-------- +7ywx_E +----1 ----LA----RG-- +------------------------2 +7unc_a ! ! ----------RA-- +-3 +----7xsx_a ! ! ----LT-------- +-4 +-----------------------------4z5t_A ! ! ----EA------RG +-5 +-----------------------------7n8n_A ! ! RA--ET--RT---- +-6 +-----------------------------4ne1_p ! ! ----------RT-- +-7 +-----------------------------7m1x_C ! ! --RAAANA------ +-8 +-----------------------------1jfi_B ! ! ----------RT-- +-9 +-----------------------------6m4d_C ! ! ----------RT-- +-10 +-----------------------------7lyb_G ! ! ----------RA-- -11 +-----------------------------6t7a_C ! ----------RC-- +-----------------------------6qld_f |
> 6c2s_C:TRANSCRIPTIONAL REPRESSOR, COUR, BOUND TO A 23-MER DNA DUPLEX
----RGSTRTSTHG----------RA---- L +---------------3zpl_B +-----2 --DCLT--AGTTRG----RG----RA---- L ! ! +5h3r_A +-------3 +---------------1 ------------RC--YG----KT------ ! ! +2acj_B +-4 ! TT----KATTQTTG--LTRTKA----FTYT L ! ! +---------------------2p7c_B +-5 ! ----RGTCTA--RGNT--------RT---- L ! ! +-----------------------------4fx4_B --6 ! ----------------YG------------ ! +-----------------------------3eyi_B ! --ITRGECSCSGKG---------------- L +-----------------------------5i2d_R |
> 6cnb_P:YEAST RNA POLYMERASE III INITIAL TRANSCRIBING COMPLEX
------------RCYG----KT------ +---2acj_B +-------------------------1 --DCLT--AGTTRG--RG----RA---- L +-2 +---5h3r_A ! ! --------------YG------------ +-3 +-----------------------------3eyi_B ! ! TT----KATTQTTGLTRTKA----FTYT L --4 +-----------------------------2p7c_B ! ----RGSTRTSTHG--------RA---- L +-----------------------------3zpl_B |
> 6cnc_S:YEAST RNA POLYMERASE III OPEN COMPLEX
RA--YC---------------------- +-----------------------------6f40_W +-1 ------RTSTVTMCKGDCRGTA------ L +-2 +-----------------------------1iv6_A ! ! --RC--RT--------ITQCNAACRG-- L +-3 +-----------------------------6a8r_A ! ! ----RA----------IA--NA------ +-4 +-----------------------------4xrs_G ! ! ------KA--VT--KGDCRGTA------ L +-5 +-----------------------------1w0u_A ! ! ------RTRCET----SAQAKT------ L +-6 +-----------------------------6qec_A ! ! ------RA------KGSAQA-------- L +-7 +-----------------------------6j5b_C ! ! --------------RTVAIANAMCRG-- L +-8 +-----------------------------1le8_A ! ! ------RT------QTVAQT------NA L +-9 +-----------------------------3a01_F ! ! ------RTSTVC--KGDCRG-------- L -10 +-----------------------------1w0t_A ! ------RT--------VAQT------NA L +-----------------------------3lnq_A |
> 6dta_A:BACTERIOPHAGE N4 RNA POLYMERASE II ELONGATION COMPLEX 2
TTKATTQTTGLTRT--KA--FTYT L +-----2p7c_B +-----------------------2 --------RCYG------KT---- +-3 +-----2acj_B ! ! ----------YG------------ --4 +-----------------------------3eyi_B ! --------IAQCNAYC-------- L ! +3rkq_B +----------------------------1 --------IAQTNA---------- L +5ego_B |
> 6el8_A:CRYSTAL STRUCTURE OF THE FORKHEAD DOMAIN OF HUMAN FOXN1 IN COMPLEX WITH DNA
------------NAST--RGHT--STFT------ L +-----------------1vtn_C +---5 ------------NAST--RGHT--STLT------ L ! ! +-----7cby_C ! +-----------3 ------------NAST--RTHT--STLT------ L ! +-----4lg0_A +-7 ------------NAST--RTHT--ST-------- L ! ! +-----------3l2c_A ! ! +------4 --TT----KATTQTTG----LTRT----KAFTYT L ! ! ! +-----------2p7c_B +---8 +--6 --------STRTSTHG------------------ L ! ! ! +3zpl_B ! ! +-----------------2 --------------RC----YG------------ ! ! +2acj_B +-9 ! RT--LANTTTETYTRG------------------ L ! ! +-----------------------1f4k_B ! ! ----------KT--RG----RGYA----KA---- L +-10 ! +5jvt_A ! ! +--------------------------1 --------DCKT--RGST--RGYA---------- L ! ! +4bnc_A -11 ! ----------KT--RGAT--RGNT---------- L ! +---------------------------8smh_F ! --------------------YG------------ +-----------------------------3eyi_B |
> 6es3_K:STRUCTURE OF CDX2-DNA(TCG)
RARA--IAQTNA---- L +-5ego_B +--------------1 --RT--NT--NAIARG L +------------2 +-1b72_B ! ! ----RTNT--NAIARG L --3 +----------------4cyc_B ! --RT--VTQTNA--RG L +-----------------------------8ejp_B |
> 6fbq_A:CRYSTAL STRUCTURE OF THE HUMAN RETINOID X RECEPTOR DNA-BINDING DOMAIN BOUND TO THE HUMAN MEP DR1 RESPONSE ELEMENT, PH 7.0
--EAKG--KTRG-- L +-----------------------------4umm_A ! CAECKG--KGRG-- L ! +----1cit_A +-4 +------------1 ----KGVT--RG-- L ! ! +---2 +----2c7a_B ! ! ! ! --ECKGAG--RG-- L --5 +-------3 +-----------------4ond_A ! ! --ECKGAG--KTRG L ! +---------------------4aa6_B ! --ECKGAGKGRG-- L +-----------------------------1hcq_E |
> 6fq8_A:CLASS 3 : TRANSLOCATED NUCLEOSOME
RG----RT-- +-----------------------------6px1_A ! RG-------- ! +8jh2_e ! +-----------------3 ------RC-- --9 +---5 +7ux9_E ! ! ! ------RA-- ! +---7 +------------------7e9c_F ! ! ! ------RC-- ! ! +----------------------7yqk_C +--8 ------RT-- ! +8u14_G ! +-------------------1 ------RG-- ! ! +8upf_G +------6 ------RG-- ! +8txv_G +------------------4 ------RARA ! +6a5l_g +-2 --HGRTRG-- +8rbx_V |
> 6fqp_B:CRYSTAL STRUCTURE OF TALE HOMEOBOX DOMAIN TRANSCRIPTION FACTOR TGIF1 WITH ITS CONSENSUS DNA
--RT------------NT--NA---- L +-----------------------------1b72_B +-2 RARA------------IAQTNA---- L ! ! +---5ego_B +-3 +-------------------------1 ----RT----------NT--NAIARG L ! ! +---4cyc_B +-4 ! RCRT------------VTQTNA--RG L ! ! +-----------------------------8ejp_B --5 ! ------------STTAQCST------ ! +-----------------------------8b4b_W ! ------STRGQTQAST---------- L +-----------------------------7t8k_B |
> 6fzt_A:CRYSTAL STRUCTURE OF SMAD8_9-MH1 BOUND TO THE GGCGC SITE.
--RGQA--KG L +-----------------------------3kmp_A +-1 --RGQAHTKG L +-2 +-----------------------------5x6g_A ! ! DCRGQC--KG L +-3 +-----------------------------6tbz_A ! ! ----QC--KG --4 +-----------------------------5mey_A ! --RGQC--KG L +-----------------------------5nm9_A |
> 6iod_A:THE STRUCTURE OF UDGX IN COMPLEX WITH SINGLE-STRANDED DNA
DGDG------------LGRG---- +-----------6iod_A +--------1 ------RA----RCQTNT--QGTC L +---2 +-----------2dp6_A ! ! ------------------RG---- +-3 +--------------------1mwi_A ! ! ----KT----CGQT--PG------ --4 +------------------------4z47_A ! --------TT-------------- L +--------------------------4yig_E |
> 6ir9_e:RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH ELF1 AND SPT4/5, STALLED AT SHL(-1) OF THE NUCLEOSOME
RG---------- +8jh2_e +--------------1 RG------RT-- +---------8 +6px1_A ! ! --------RC-- ! +--------------7ux9_E ! --------RA-- ! +--7xsx_a ! +----------6 --------RT-- ! ! ! +8u14_G ! ! +--3 --------RG-- -12 +--7 +8upf_G ! ! ! --------RG-- ! ! ! +8txv_G ! ! +------------5 --------RARA ! +----10 ! +6a5l_g ! ! ! +-4 ------HGRG-- ! ! ! +8rbx_V ! ! ! --------RA-- +-11 ! +7e9c_F ! +----------------2 --------RG-- ! +7e9c_G ! --RAAANA---- ! +----------------1jfi_B +-----9 --------RC-- +----------------7yqk_C |
> 6iro_A:THE CROSSLINKED COMPLEX OF ISWI-NUCLEOSOME IN THE ADP-BOUND STATE
RG----RT-- +-----------------------------6px1_A ! RG-------- ! +8jh2_e ! +-----------------3 ------RC-- ! +---5 +7ux9_E --9 ! ! ------RA-- ! +-6 +------------------7e9c_F ! ! ! ------RC-- ! +--7 +----------------------7yqk_C ! ! ! ------RG-- ! ! +------------------------8upf_G +-8 ------RT-- ! +----------8u14_G ! ! ------RARA +----------------4 +6a5l_g ! +-1 ------RG-- +---------2 +8txv_G ! --HGRTRG-- +8rbx_V |
> 6j5b_C:STRUCTURAL BASIS FOR THE TARGET DNA RECOGNITION AND BINDING BY THE MYB DOMAIN OF PHOSPHATE STARVATION RESPONSE REGULATOR 1
RT--NT--NAIARG L +-----------------------------1b72_B --3 RA--IAQTNA---- L ! +----------------5ego_B +------------2 RT--VTQTNA--RG L ! +---8ejp_B +------------1 --RTNT--NAIARG L +---4cyc_B |
> 6kw4_Y:THE CLASSB RSC-NUCLEOSOME COMPLEX
EG--SCRG L +-----6kw4_Y +-----------1 ------RC +-------2 +-----6ryu_V ! ! --NG--RC --3 +-----------------8wha_K ! ET------ L +-------------------------7aud_E |
> 6kxv_A:CRYSTAL STRUCTURE OF A NUCLEOSOME CONTAINING LEISHMANIA HISTONE H3
------RT-- +-----------------------------6px1_A +-6 ------RC-- +-7 +-----------------------------7ux9_E ! ! ------RA-- +-8 +-----------------------------7e9c_F ! ! RG-------- ! +-----------------------------7ccr_H ! ------RT-- ! +8u14_G --9 +-------1 ------RG-- ! ! +8upf_G ! +----------4 ------RARA ! ! ! +6a5l_g ! ! +-------2 ------RC-- +----------5 +7yqk_C ! ------RG-- ! +8txv_G +-----------------3 --HGRTRG-- +8rbx_V |
> 6l6q_B:STRUCTURAL BASIS OF NR4A2 HOMODIMERS BINDING TO SELECTIVE NUR- RESPONSIVE ELEMENTS
CAECKG--KGRG--RTRT L +---1cit_A +-------------2 --EAKG--KTRG------ L +---3 +---4umm_A ! ! ----KGVT--RG------ L +----4 +-----------------2c7a_B ! ! --ECKGAG--RG------ L --5 +---------------------4ond_A ! --ECKGAGKGRG------ L ! +1hcq_E +-------------------------1 --ECKGAG--KTRG---- L +4aa6_B |
> 6lui_A:CRYSTAL STRUCTURE OF THE SAMD1 WH DOMAIN AND DNA COMPLEX
TT----KATTQTTG----LTRT----KA--FTYT L +-----2p7c_B +------------------4 ------------RC----YG--------KT---- ! +-----2acj_B +-6 ------DCKT--RGST--RGYA------------ L ! ! +4bnc_A ! +-----------------------2 ------DCKT--RG----RGYA----KA------ L ! +5jvt_A ! ----------NAST--RTHT--ST---------- L +-8 +3l2c_A ! ! +----1 ----------NAST--RTHT--STLT-------- L ! ! +--------3 +4lg0_A ! ! ! ! ----------NAST--RGHT--STLT-------- L ! ! +-----------5 +----7cby_C +-9 ! ! ! ----------NAST--RGHT--STFT-------- L ! ! +-7 +-------------1vtn_C ! ! ! ------QCKT--RGAT--RGNT------------ L -10 ! +-------------------------8smh_F ! ! --ITRGECSCSGKG-------------------- L ! +----------------------------5i2d_R ! ------------------YG-------------- +-----------------------------3eyi_B |
> 6m4g_G:STRUCTURAL MECHANISM OF NUCLEOSOME DYNAMICS GOVERNED BY HUMAN HISTONE VARIANTS H2A.B AND H2A.Z.2.2
HGRTRG-- +-----------------------------8rbx_V +-8 ----RC-- ! +-----------------------------7yqk_C ! ----RT-- ! +8u14_G ! +-------2 ----RG-- ! ! +8upf_G --9 +-------4 ----RARA ! ! ! +6a5l_g ! +----5 +-------1 ----RG-- ! ! ! +8txv_G ! ! ! ----RC-- ! ! +---------------7ux9_E +--------7 ----RGRG ! +------8kcb_A ! +-----------3 ----RA-- +-6 +------7e9c_F ! ----RT-- +------------------6px1_A |
> 6n1p_A:DIHEDRAL OLIGOMERIC COMPLEX OF GYRA N-TERMINAL FRAGMENT WITH DNA, SOLVED BY CRYOEM IN C2 SYMMETRY
------NAST--RGHTST------------------ L +7cby_C +------------------1 ------NAST--RGHTST----FT------------ L +---------2 +1vtn_C ! ! TTKATT--QTTG------LTRT--KA---------- L --3 +-------------------2p7c_B ! --------------------------NTATATSTRG L +-----------------------------1dh3_C |
> 6nce_A:CRYSTAL STRUCTURE OF THE HUMAN FOXN3 DNA BINDING DOMAIN IN COMPLEX WITH A FORKHEAD DNA SEQUENCE
------------NAST--RGHT--STFT---- L +--------------------1vtn_C +-6 --TT----KATTQTTG----LTRT----KAFT L ! ! +-----2p7c_B ! +--------------3 --------------RC----YG---------- +----8 +-----2acj_B ! ! ----------KT--RG----RGYA----KA-- L ! ! +5jvt_A ! +---------------------1 ----------KT--RGST--RGYA-------- L ! +4bnc_A ! ------------NAST--RGHT--STLT---- L +-10 +-----7cby_C ! ! +-2 ------------NAST--RTHT--STLT---- L ! ! +--------------4 +-----4lg0_A ! ! ! ! RT--LA--TTETYTRG---------------- L ! ! +---7 +-------1f4k_B ! ! ! ! ------------NAST--RTHT--ST------ L -11 ! ! ! +-----------3l2c_A ! +-9 +----------5 ------RGSTRTSTHG---------------- L ! ! +-----------3zpl_B ! ! ----------KT--RGAT--RGNT-------- L ! +--------------------------8smh_F ! --------------------YG---------- +-----------------------------3eyi_B |
> 6nqa_A:ACTIVE STATE DOT1L BOUND TO THE H2B-UBIQUITINATED NUCLEOSOME, 1-TO-1 COMPLEX
RG---------- +8jh2_e +--------------1 RG------RT-- +-------4 +6px1_A ! ! --------RC-- +-5 +--------------7ux9_E ! ! --------RA-- +-6 +----------------------7e9c_F ! ! --------RC-- +-7 +------------------------7yqk_C ! ! --HGRTRG---- ! +-------------------------8rbx_V +-8 --------RARA ! ! +6a5l_g ! ! +--------------2 --------RG-- --9 +------------3 +8upf_G ! ! --------RG-- ! +--------------8txv_G ! --------RT-- +-----------------------------8u14_G |
> 6pax_A:CRYSTAL STRUCTURE OF THE HUMAN PAX-6 PAIRED DOMAIN-DNA COMPLEX REVEALS A GENERAL MODEL FOR PAX PROTEIN-DNA INTERACTIONS
--RC----IAQCNAYC-- L +---3rkq_B +--------------------3 ----RT--NT--NAIARG L ! +---4cyc_B --4 --RT--QTVAQTNA---- L ! +8osb_E ! +--1 --------IAQTNA---- L +---------------------2 +5ego_B ! RT------IAQCNAMG-- L +--1b72_A |
> 6pwe_G:CRYO-EM STRUCTURE OF NUCLEOSOME CORE PARTICLE
------RG-- +8txv_G +---------------1 ------RG-- +----6 +8upf_G ! ! ------RC-- +-8 +---------------7yqk_C ! ! --HGRTRG-- ! +--------------------8rbx_V +----9 ------RT-- ! ! +8u14_G ! ! +-------3 ------RARA ! +-----------4 +6a5l_g ! ! ------RA-- ! +--------7e9c_F -11 ------RA-- ! +7xsx_a ! +--------------2 ------RC-- ! +----5 +7ux9_E ! ! ! ------RT-- ! +--7 +--------------6px1_A ! ! ! LA----RG-- +-10 +-------------------7unc_a ! LC-------- +----------------------8bvw_e |
> 6pwe_H:CRYO-EM STRUCTURE OF NUCLEOSOME CORE PARTICLE
RG------ +-----------------------------7ccr_H +-10 ----RC-- ! +-----------------------------7yqk_C ! ----RG-- ! +8txv_G ! +--------------1 ----RG-- ! ! +8upf_G ! +-6 ----RT-- -11 ! ! +8u14_G ! ! +-------------4 ----RARA ! +----7 ! +6a5l_g ! ! ! +-3 --HGRG-- ! ! ! +8rbx_V ! ! ! ----RA-- ! ! +----------------7e9c_F +-------9 ----RA-- ! +7xsx_a ! +--------------2 ----RC-- ! +----5 +7ux9_E ! ! ! ----RT-- +-8 +--------------6px1_A ! ----RG-- +-------------------7unc_a |
> 6pww_K:CRYO-EM STRUCTURE OF MLL1 IN COMPLEX WITH RBBP5 AND WDR5 BOUND TO THE NUCLEOSOME
RG--------RT-- +---------------------------6px1_A ! RG------------ ! +8jh2_e ! +-----------------4 ----------RC-- ! ! +7ux9_E ! +---10 ----------RA-- -12 ! ! +7e9c_F ! ! +------------------2 ----------RG-- ! ! +7e9c_G ! ! ----------RA-- ! ! +--7xsx_a ! ! +--6 ----------RG-- +--11 ! ! +8txv_G ! ! +--3 ----------RG-- ! +--------7 +8upf_G ! ! ! ----------RARA ! ! ! +6a5l_g ! +--8 +-----1 ----------RC-- ! ! ! +7yqk_C ! ! ! ----------RT-- +-----9 ! +8u14_G ! +-------------5 ------HGRTRG-- ! +8rbx_V ! --RAAANA------ +-----------------1jfi_B |
> 6px1_A:SET2 BOUND TO NUCLEOSOME
RTRG---- +---------6pww_K +-------------------1 ----RG-- +-2 +---------7e9c_G ! ! ----RART --3 +-----------------------------3x1t_G ! ----RT-- +-----------------------------7jzv_N |
> 6px1_C:SET2 BOUND TO NUCLEOSOME
HGRTRG-- +-----------------------------8rbx_V ! ----RARA ! +6a5l_g ! +--------------1 ----RC-- --9 ! +7yqk_C ! +-------5 ----RT-- ! ! ! +8u14_G ! ! +--------------2 ----RG-- ! ! +8upf_G +------8 ----RG-- ! +-----------8txv_G ! +-------4 ----RC-- ! ! +-----------7ux9_E +--7 ----RGRG ! +------8kcb_A ! +-----------3 ----RA-- +-6 +------7e9c_F ! ----RT-- +------------------6px1_A |
> 6qil_A:THE COMPLEX STRUCTURE OF HSROSR-S1 (VNG0258H/ROSR-S1)
--TT------KATT--QTTG----LTRT----KA----FTYT L +---------------2p7c_B ! ------------------NAST--HT--STLT---------- L +------6 +7cby_C ! ! +----1 ------------------NAST--HT--STFT---------- L ! +---------4 +1vtn_C +--7 ! ----------------NAST--RTHT--STLT---------- L ! ! +-----4lg0_A ! ! ------------------------YG---------------- ! ! +---3eyi_B +-8 +------------------3 ------------------RC----YG--------KT------ ! ! +---2acj_B ! ! ----------------NAST--RTHT--ST------------ L ! ! +-----------3l2c_A +-9 +-------------5 RT--LANTHGTTET--YTRG---------------------- L ! ! +-----------1f4k_B ! ! ----------DCKT----RG----RGYA----KA-------- L +-10 ! +5jvt_A ! ! +--------------------------2 ----------DCKT----RGST--RGYA-------------- L ! ! +4bnc_A -11 ! ----------QCKT----RGAT--RGNT-------------- L ! +---------------------------8smh_F ! ------RG----DTVT----STRG------------WT---- L +-----------------------------6lxn_A |
> 6r25_E:STRUCTURE OF LSD2/NPAC-LINKER/NUCLEOSOME CORE PARTICLE COMPLEX: CLASS 3
--RG---------------- +5z3u_A +--------------1 --RG----------RT---- +--------8 +6px1_A ! ! --RT--RG------------ ! +--------------6pww_K ! --RG----------RT---- ! +----------------7zs9_e ! +-10 ----------------KG-- ! ! ! +7nkx_f ! ! +---------------5 --------------RA--RA ! ! ! +6a5l_g ! +--11 +-3 --------------RG---- ! ! ! +8upf_G -16 ! ! ------------IT------ ! ! ! +------3wkj_D ! +-13 +----------7 --------------RC---- ! ! ! +------7yqk_C ! ! ! --RT----LA----RG---- ! ! ! +--------------7unc_a ! ! +------9 --RCYA--------RG---- ! +-14 ! +7ccr_A ! ! ! +--------------2 --------------RC---- ! ! ! +7ux9_E ! ! ! --------------RT---- +-15 ! +7kbd_C ! +----------------------4 ----------HG--RG---- ! +8rbx_V ! HGRGYG--QC----RG---- ! +------------------7y7i_E +--12 --------LT---------- ! +-----7ywx_E +------------6 --------------RA---- +-----7e9c_F |
> 6r2v_B:ARABIDOPSIS NF-Y/CCAAT-BOX COMPLEX
----RA-- +-----------------------------7e9c_F +-6 ----RT-- +-7 +-----------------------------6px1_A ! ! ----RC-- ! +-----------------------------7ux9_E ! ----RARA ! +6a5l_g --8 +--------------1 ----RG-- ! ! +8upf_G ! +---4 ----RG-- ! ! ! +8txv_G ! ! +-------------3 HGRTRG-- +----------5 +8rbx_V ! ----RT-- ! +8u14_G +-----------------2 ----RC-- +7yqk_C |
> 6r2v_C:ARABIDOPSIS NF-Y/CCAAT-BOX COMPLEX
----RG-- +8txv_G +--------------1 ----RG-- ! +8upf_G +---4 ----RARA ! ! +6a5l_g +--5 +--------------2 ----RC-- ! ! +7yqk_C ! ! ----RA-- ! +------------------7e9c_F +-7 ----RT-- ! ! +8u14_G ! ! +-------------------3 --HGRG-- +------8 +-6 +8rbx_V ! ! ! ----RC-- ! ! +--------------------7ux9_E --9 ! ----RT-- ! +----------------------6px1_A ! RG------ +-----------------------------7ccr_H |
> 6r8y_H:CRYO-EM STRUCTURE OF NCP-6-4PP(-1)-UV-DDB
RG---------------- +3x1t_H +-5 ------------RC---- +-------------6 +7yqk_C ! ! ------------RA--RA +-7 +6a5l_g ! ! ------------RC---- +--10 +--------------7ux9_E ! ! ------------RT---- ! ! +7kbd_C ! +----------------3 --------HG--RG---- +-12 +8rbx_V ! ! --------------KG-- ! ! +7nkx_f ! ! +--------------2 ------------RA---- +-13 +-----9 +7e9c_F ! ! ! ------------RG---- ! ! +--------------8upf_G ! ! ------IT---------- ! ! +3wkj_D ! +----------------------1 RG---------------- +--14 +7ccr_H ! ! ------------RT---- ! ! +7zs9_e ! ! +--------------4 ------------RT---- ! ! +----8 +6px1_A +-15 ! ! ! ------------RG---- ! ! +---11 +--------------7ccr_A ! ! ! ----LA------RG---- -16 ! +-------------------7unc_a ! ! --QC--------RG---- ! +----------------------------7y7i_E ! ----------KT------ L +-----------------------------7cvo_A |
> 6see_H:CLASS2A : CENP-A NUCLEOSOME IN COMPLEX WITH CENP-C CENTRAL REGION
----RT-- +8u14_G +------------------1 ----RG-- ! +8upf_G ! ----RARA +-5 +6a5l_g ! ! +-2 ----RG-- ! ! +---------3 +8txv_G ! ! ! ! ----RC-- +-6 +-------4 +7yqk_C ! ! ! HGRTRG-- ! ! +----------8rbx_V +-7 ! ----RC-- ! ! +--------------------7ux9_E --8 ! ----RT-- ! +----------------------6px1_A ! ----RA-- +------------------------7e9c_F |
> 6sjf_B:CRYO-EM STRUCTURE OF THE RECBCD CHI UNRECOGNISED COMPLEX
----RA--IAQTNA------ L +-----------------------------5ego_B ! RT--RTKTIAQCNA----RT L --4 +-1ig7_A ! +------2 ----RC--IAQCNAYC---- L ! ! +-3rkq_B +--------------------3 --YART--VTQTNAMTKTRT L ! +1jgg_B +--------1 ----RT--IAQCNAMG---- L +1b72_A |
> 6t7a_H:STRUCTURE OF HUMAN SOX11 TRANSCRIPTION FACTOR IN COMPLEX WITH A NUCLEOSOME
RG------ +-----------------------------7ccr_H +-8 ----RC-- ! +-----------------------------7yqk_C ! ----RARA ! +6a5l_g ! +--------------1 ----RG-- ! ! +8upf_G ! +-----4 ----RG-- --9 ! ! +8txv_G ! +-5 +-------------2 --HGRG-- ! ! ! +8rbx_V ! ! ! ----RT-- ! +----6 +--------------------6px1_A ! ! ! ----RT-- ! ! ! +-----------8u14_G +--7 +---------3 ----RC-- ! +-----------7ux9_E ! ----RA-- +--------------------------7e9c_F |
> 6uph_D:STRUCTURE OF A YEAST CENTROMERIC NUCLEOSOME AT 2.7 ANGSTROM RESOLUTION
RG---- +-----------------------------7ccr_H ! --RG-- ! +8txv_G ! +-------2 --RG-- ! ! +8upf_G ! +----------4 --RARA ! ! ! +6a5l_g --9 ! +-------1 --RC-- ! +-5 +7yqk_C ! ! ! --RT-- ! ! ! +8u14_G ! +--6 +-----------------3 --RG-- ! ! ! +8rbx_V ! +-7 ! --RA-- ! ! ! +------------------7e9c_F +------8 ! --RC-- ! +---------------------7ux9_E ! --RT-- +----------------------6px1_A |
> 6vtx_A:CRYSTAL STRUCTURE OF HUMAN KLF4 ZINC FINGER DNA BINDING DOMAIN IN COMPLEX WITH NANOG DNA
--SGHG--RGDAETRGRG--DCHG-- L +6vtx_A +-------1 RG--ECRA--TGECRGRG----ET-- L +--------2 +5wjq_D ! ! EC----RG--YCKGRGQA----TC-- L --4 +-------8sst_A ! --TTSGRG--QCYC--NTYGQGFT-- L ! +----------5vmz_A +-----3 RGDCKG----------RGSTDCHGRG L +----------8e3e_F |
> 6wig_A:STRUCTURE OF STENOFOLIA PROTEIN HD DOMAIN BOUND WITH DNA
--RT------QTVAQTNA------ L +8osb_E +--------1 --RA--------IAQTNA------ L ! +5ego_B +---5 RART--------VTKGNA--KA-- L ! ! +2lkx_A ! +-------3 --RT--------NT--NAIA---- L +---------6 +1b72_B ! ! ------------NCICNARGRG-- L ! ! +4xrm_B +------7 +------------2 ----RT------NT--NAIARG-- L ! ! +4cyc_B ! ! --RT--------IAQCNAMG---- L --8 ! +----1b72_A ! +-----------------4 --RC--------IAQCNAYC---- L ! +----3rkq_B ! ------RCKG----TTTCATDCKG L +-----------------------------4ix7_B |
> 6x0n_f:BRIDGING OF DOUBLE-STRAND DNA BREAK ACTIVATES PARP2/HPF1 TO MODIFY CHROMATIN
--------RA---- +-----------------------------7e9c_F ! ----------KG-- ! +7nkx_f ! +------------------5 --------RC---- ! ! +7yqk_C ! +-10 --------RT---- ! ! ! +7kbd_C ! ! ! +-1 --------RA--RA ! ! +-------------------2 +6a5l_g +-13 ! ! --------RG---- ! ! +--11 +8upf_G ! ! ! ! IT------------ ! ! ! ! +-------------------3wkj_D ! ! ! ! ! --LA----RG---- ! ! ! ! ! +7unc_a ! ! ! ! ! +--------------3 --------RT---- ! ! ! +-9 ! +6px1_A ! ! ! ! +---7 --------RG---- -14 +--12 ! ! ! +7ccr_A ! ! ! ! +--------------4 --------RC---- ! ! +-8 +7ux9_E ! ! ! ----KT-------- L ! ! ! +------7cvo_A ! ! +-----------6 ----HGRTRG---- ! ! +------8rbx_V ! ! --------RT---- ! +-------------------------7zs9_e ! --------RG---- +-----------------------------7y7i_E |
> 6x59_H:THE MOUSE CGAS CATALYTIC DOMAIN BINDING TO HUMAN ASSEMBLED NUCLEOSOME
RG------ +-----------------------------7ccr_H ! ----RARA ! +6a5l_g ! +--------------1 ----RG-- ! ! +8upf_G ! +---4 ----RT-- ! ! ! +8u14_G --9 ! +-------------2 ----RC-- ! +-5 +7yqk_C ! ! ! ----RG-- ! ! ! +8txv_G ! +--6 +-----------------3 --HGRG-- ! ! ! +8rbx_V ! +-7 ! ----RA-- ! ! ! +------------------7e9c_F +------8 ! ----RC-- ! +---------------------7ux9_E ! ----RT-- +----------------------6px1_A |
> 6y42_B:CRYSTAL STRUCTURE OF RSRR COMPLEXED TO A 39 BASEPAIR DNA FRAGMENT OF THE RSRR PROMOTER
--------RC--YG--------KT---- +-----------------------------2acj_B +-2 TTKATTQTTG--LTRT----KA--FTYT L ! ! +--------2p7c_B +-3 +--------------------1 ------NASTRTHT--STLT-------- L ! ! +--------4lg0_A --4 ! ------------YG-------------- ! +-----------------------------3eyi_B ! ------NASTRTHT--ST---------- L +-----------------------------3l2c_A |
> 6y5d_H:STRUCTURE OF HUMAN CGAS (K394E) BOUND TO THE NUCLEOSOME
RG------ +-----------------------------7ccr_H +-8 ----RA-- +-9 +-----------------------------7e9c_F ! ! ----RC-- ! +-----------------------------7yqk_C ! ----RT-- ! +8u14_G ! +-------2 ----RG-- ! ! +8upf_G -10 +-------4 ----RARA ! ! ! +6a5l_g ! +--5 +-------1 ----RG-- ! ! ! +8txv_G ! +---6 ! ----RC-- ! ! ! +---------------7ux9_E ! ! ! ----RT-- +------7 +------------------6px1_A ! ----RGRG ! +8kcb_A +----------------------3 --HGRG-- +8rbx_V |
> 6yov_C:OCT4-SOX2-BOUND NUCLEOSOME - SHL+6
------RT-- +8u14_G +------------------1 ------RG-- ! +8upf_G ! ------RG-- +-9 +8txv_G ! ! +---------5 ------RARA ! ! ! ! +6a5l_g ! +-------7 +-2 ------RC-- +----10 ! +7yqk_C ! ! ! --HGRTRG-- ! ! +----------8rbx_V ! ! ------RA-- ! +-------------------7e9c_F ! ------RA-- -11 +7xsx_a ! +-3 LA----RG-- ! +---------4 +7unc_a ! ! ! ------RT-- ! +----6 +6px1_A ! ! ! LC-------- +----------8 +---------8bvw_e ! ------RC-- +--------------7ux9_E |
> 7at8_D:HISTONE H3 RECOGNITION BY NUCLEOSOME-BOUND PRC2 SUBUNIT EZH2.
--RG------------------ +5z3u_A +--------------1 --RG------------RT---- +--------9 +6px1_A ! ! --RT--RG-------------- ! +--------------6pww_K ! --RG------------RT---- ! +---------------7zs9_e ! +----10 --RCYA----------RG---- ! ! ! +7ccr_A ! ! +---------------2 ----------------RC---- ! ! +7ux9_E ! ! --RT----LA------RG---- -16 ! +----------7unc_a ! ! +--7 ----------HG--RTRG---- ! ! ! +----------8rbx_V ! +-14 +-8 ------------------KG-- ! ! ! ! ! +7nkx_f ! ! ! ! +------------5 ----------------RA--RA ! ! ! ! ! +6a5l_g ! ! ! +-11 +-3 ----------------RG---- ! ! ! ! ! +8upf_G ! ! ! ! ! ----------------RT---- +-15 +--12 ! +7kbd_C ! ! +---------------4 ----------------RC---- ! ! +7yqk_C ! ! ------------IT-------- ! +-----------------3wkj_D ! HGRGYG--QC------RG---- ! +------------------7y7i_E +--13 --------LT------------ ! +-----7ywx_E +------------6 ----------------RA---- +-----7e9c_F |
> 7b0c_A:[4FE-4S]-NSRR COMPLEXED TO 23-BP HMPA1 OPERATOR FRAGMENT
--------------RC----YG--------KT---- +-----------------------------2acj_B +-2 TT------KATTQTTG----LTRT----KA--FTYT L ! ! +--------2p7c_B +-3 +--------------------1 ------------NAST--RTHT--STLT-------- L ! ! +--------4lg0_A +-4 ! --------------------YG-------------- ! ! +-----------------------------3eyi_B --5 ! --------------NAST--HT--STLT-------- L ! +-----------------------------7cby_C ! --VTSARGTA--RT---------------------- L +-----------------------------6za3_B |
> 7b24_C:DTXR-LIKE IRON-DEPENDENT REGULATOR IDER (P39G VARIANT) COMPLEXED WITH COBALT AND ITS CONSENSUS DNA-BINDING SEQUENCE
TT----KATTQTTGLTRTKA--FTYT L +-----------------2p7c_B +-----------2 ------------RCYG----KT---- ! ! +---2acj_B +-3 +-------------1 --DCLT--AGTTRG--RG-------- L ! ! +---5h3r_A --4 ! --------------YG---------- ! +-----------------------------3eyi_B ! ----RGSTRTSTHG------------ L +-----------------------------3zpl_B |
> 7bhy_A:DNA-BINDING DOMAIN OF DEOR IN COMPLEX WITH THE DNA OPERATOR
RT--LANTHGTTETYTRG-------- L +-----------------------------1f4k_B +-1 ------DCLT--AGTTRG--RG---- L +-2 +-----------------------------5h3r_A ! ! --TT------KATTQTTGLTRT--KA L --3 +-----------------------------2p7c_B ! ----------------------YCFA L +-----------------------------6pe2_B |
> 7bzg_B:STRUCTURE OF BACILLUS SUBTILIS HXLR, WILD TYPE IN COMPLEX WITH FORMALDEHYDE AND DNA
----RGSTRTSTHG--------RA-- L +---------------3zpl_B +-----2 --DCLT--AGTTRG--RG----RA-- L ! ! +5h3r_A +-------3 +---------------1 ------------RCYG----KT---- ! ! +2acj_B +-4 ! ------KATTQTTGLTRTKA--FTYT L ! ! +---------------------2p7c_B --5 ! LANTHGTTETYTRG------------ L ! +-----------------------------1f4k_B ! --------------YG---------- +-----------------------------3eyi_B |
> 7c0j_A:CRYSTAL STRUCTURE OF CHIMERIC MUTANT OF GH5 IN COMPLEX WITH Z-DNA
TT------KATTQTTG----LTRT----KAFTYT L +--------2p7c_B +--------------2 ------------NAST--RGHT--STFT------ L ! +--------1vtn_C +---3 --------------------YG------------ ! ! +---3eyi_B +-4 +-------------------1 --------------RC----YG------------ ! ! +---2acj_B +-5 ! --VTSARGTA--RT-------------------- L ! ! +---------------------------6za3_B +-6 ! --------DCKT--RGST--RGYA---------- L ! ! +-----------------------------4bnc_A --7 ! ----ITRGECSCSGKG------------------ L ! +-----------------------------5i2d_R ! ----EGRTRGRGYT-------------------- L +-----------------------------4yo2_A |
> 7c9o_B:CRYSTAL STRUCTURE OF DNA-BOUND CCT/NF-YB/YC COMPLEX (HD1CCT/GHD8/OSNF- YC2)
----RA-- +-----------------------------7e9c_F +-6 ----RT-- +-7 +-----------------------------6px1_A ! ! ----RC-- ! +-----------------------------7ux9_E ! ----RG-- --8 +8txv_G ! +------------------1 ----RG-- ! ! +8upf_G ! ! ----RT-- +----------5 +8u14_G ! +---------3 ----RARA ! ! ! +6a5l_g +-------4 +-2 ----RC-- ! +7yqk_C ! HGRTRG-- +----------8rbx_V |
> 7c9o_C:CRYSTAL STRUCTURE OF DNA-BOUND CCT/NF-YB/YC COMPLEX (HD1CCT/GHD8/OSNF- YC2)
--RT-- +8u14_G +--------------1 --RG-- ! +8upf_G +-4 --RG-- ! ! +8txv_G ! +-------------3 --RC-- +---5 +7yqk_C ! ! --RARA ! ! +6a5l_g +--6 +--------------2 HGRG-- ! ! +8rbx_V +-7 ! --RA-- ! ! +------------------7e9c_F --8 ! --RC-- ! +---------------------7ux9_E ! --RT-- +----------------------6px1_A |
> 7cby_C:STRUCTURE OF FOXG1 DNA BINDING DOMAIN BOUND TO DBE2 DNA SITE
----------------NAST--RGHT--STLT---------- L +7cby_C +----1 ----------------NAST--RGHT--STFT--------RT L +--------------3 +1vtn_C ! ! ------ST--------NAST--RTHT--STLT---------- L ! +-----4lg0_A +--7 ----------RGSTRTSTHG--------------RA------ L ! ! +3zpl_B ! ! +----------------2 ----------------RC------YG---------------- ! +--5 +2acj_B ! ! --TT--------KATTQTTG----LTRT----KA--FTYT-- L +---8 +-----------------2p7c_B ! ! ------ST--------NAST--RTHT--ST------------ L ! ! +---------3l2c_A ! ! +----------4 ----------------RGNT--RGSTAT--RA---------- L --9 +--6 +---------2o6g_G ! ! RT--LA--NTHGTTETYTRG---------------------- L ! +--------------------1f4k_B ! --------------KT--RGAT--RGNT-------------- L +---------------------------8smh_F |
> 7ccr_A:STRUCTURE OF THE 2:2 CGAS-NUCLEOSOME COMPLEX
----RC-- +-----------------------------7ux9_E +-5 ----RT-- +-6 +-----------------------------6px1_A ! ! ----RA-- +-7 +-----------------------------7e9c_F ! ! ----RC-- ! +-----------------------------7yqk_C ! ----RG-- --8 +8txv_G ! +---------------1 ----RG-- ! +---3 +8upf_G ! ! ! HGRTRG-- +---------4 +---------------8rbx_V ! ----RT-- ! +8u14_G +------------------2 ----RARA +6a5l_g |
> 7cli_B:STRUCTURE OF NF-KB P52 HOMODIMER BOUND TO P-SELECTIN KB DNA FRAGMENT
RGRGYTCTECHG---------- L +-----------------------------2o61_B +-2 RGRGYTCCECHG--KG------ L ! ! +1a3q_A --3 +----------------------------1 RCRCYC--ECHC--KT----RG L ! +1svc_P ! RGRGYTCCECHTKTKTPTKTRG L +-----------------------------1nfk_A |
> 7cvo_A:CRYSTAL STRUCTURE OF ARABIDOPSIS CO CCT DOMAIN IN COMPLEX WITH NF- YB3/YC4 AND FT CORE2 DNA
------RGRG +8kcb_A +--------------1 ------RC-- ! +7yqk_C ! ------RG-- +---7 +8txv_G ! ! +-------2 ------RG-- ! ! ! +8upf_G ! +------5 ------RARA +----9 ! +6a5l_g ! ! +-------4 --HGRTRG-- ! ! +8rbx_V ! ! ------RA-- -10 +------------------7e9c_F ! ------RT-- ! +-----------8u14_G ! +-----6 ------RC-- ! ! +-----------7ux9_E +-----8 LC-------- ! +8bvw_e +-----------------3 ------RT-- +6px1_A |
> 7cvo_B:CRYSTAL STRUCTURE OF ARABIDOPSIS CO CCT DOMAIN IN COMPLEX WITH NF- YB3/YC4 AND FT CORE2 DNA
------RA-- +-----------------------------7e9c_F +-8 ------RC-- ! +-----------------------------7ux9_E ! LC-------- ! +8bvw_e --9 +-------------------1 ------RT-- ! ! +6px1_A ! ! ------RARA ! ! +6a5l_g +---------7 +-2 ------RG-- ! +----------3 +8txv_G ! ! ! ------RG-- ! +---5 +8upf_G ! ! ! --HGRTRG-- +----6 +----------8rbx_V ! ------RT-- ! +8u14_G +-------------4 ------RC-- +7yqk_C |
> 7cvq_F:CRYSTAL STRUCTURE OF ARABIDOPSIS CO CCT DOMAIN IN COMPLEX WITH NF- YB2/YC3 AND FT CORE1 DNA
------RARA +6a5l_g +--------------1 ------RC-- ! +7yqk_C +-4 ------RG-- ! ! +8txv_G ! +-------------3 --HGRTRG-- +---5 +8rbx_V ! ! ------RT-- ! ! +8u14_G +--6 +--------------2 ------RG-- ! ! +8upf_G +-7 ! ------RA-- ! ! +------------------7e9c_F +------8 ! ------RC-- ! ! +---------------------7ux9_E --9 ! ------RT-- ! +----------------------6px1_A ! RG-------- +-----------------------------7ccr_H |
> 7d1z_H:CRYO-EM STRUCTURE OF SET8-NUCLEOSOME COMPLEX
--RARA +6a5l_g +-1 --RG-- +---------2 +8txv_G ! ! --RG-- +--------4 +8upf_G ! ! HGRG-- +-5 +---------8rbx_V ! ! --RT-- ! ! +8u14_G +--6 +------------------3 --RC-- ! ! +7yqk_C +-7 ! --RA-- ! ! +------------------7e9c_F --8 ! --RC-- ! +---------------------7ux9_E ! --RT-- +----------------------6px1_A |
> 7d3t_D:CRYSTAL STRUCTURE OF OSPHR2 IN COMPLEX WITH DNA
--------NCICNA--RGRG---- L +4xrm_B +--------------1 RA------IAQTNA---------- L +----5 +5ego_B ! ! --RT----NT----NA----IARG L +---------6 +--------------4cyc_B ! ! RT------NTRG------------ L ! +-------------------1b72_B ! RT------IAQCNA--MG------ L +-7 +---1b72_A ! ! +--------3 RT----QTVAQTNA---------- L ! ! ! ! +8osb_E ! +----------------4 +---2 RT------VTKGNA----KA---- L --8 ! +2lkx_A ! ! RC------IAQCNA--YC------ L ! +------------3rkq_B ! ----NG--NA-------------- L +-----------------------------2kdz_A |
> 7d69_B:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING GIARDIA HISTONES
------RA-- +-----------------------------7e9c_F ! ------RG-- ! +8txv_G ! +------------------1 ------RG-- ! ! +8upf_G --9 ! ------RARA ! +---7 +6a5l_g ! ! ! +--------------2 ------RC-- ! ! ! ! +7yqk_C ! ! +---5 ------RT-- ! ! ! +8u14_G +------8 +-------------4 --HGRTRG-- ! +8rbx_V ! LC-------- ! +8bvw_e ! +--------------3 ------RT-- +-------6 +6px1_A ! ------RC-- +--------------7ux9_E |
> 7d69_D:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING GIARDIA HISTONES
----RC-- +-----------------------------7ux9_E +-7 ----RT-- ! +-----------------------------6px1_A ! LC------ ! +-------8bvw_e ! +-----------2 ----RA-- --8 +--4 +-------7e9c_F ! ! ! ----RG-- ! ! +-------------------8upf_G ! +---5 ----RT-- ! ! ! +---------------8u14_G ! ! +------3 ----RG-- +--6 ! +8txv_G ! +--------------1 ----RARA ! +6a5l_g ! --HGRG-- +--------------------------8rbx_V |
> 7d69_E:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING GIARDIA HISTONES
----RC-- +-----------------------------7ux9_E ! LC------ ! +8bvw_e ! +------------------1 ----RT-- ! +---6 +6px1_A --9 ! ! ----RA-- ! +-7 +------------------7e9c_F ! ! ! ----RC-- ! ! +----------------------7yqk_C ! ! ----RT-- +-----8 +8u14_G ! +---------3 ----RG-- ! ! +8upf_G +-------------5 ----RARA ! +6a5l_g ! +-2 ----RG-- +--------4 +8txv_G ! --HGRG-- +8rbx_V |
> 7d69_G:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING GIARDIA HISTONES
------RC-- +-----------------------------7yqk_C ! ------RARA ! +6a5l_g ! +-----------------1 ------RG-- ! ! +8upf_G ! +---6 ------RG-- ! ! ! +-----------8txv_G -10 ! +-----5 ------RC-- ! +-7 +-----------7ux9_E ! ! ! LC-------- ! ! ! +8bvw_e ! +-8 +---------------------2 ------RT-- ! ! ! +6px1_A ! ! ! ------RGRG ! ! ! +------8kcb_A +----9 +---------------4 ------RA-- ! +------7e9c_F ! ------RT-- ! +8u14_G +-----------------------3 --HGRTRG-- +8rbx_V |
> 7dbh_A:THE MOUSE NUCLEOSOME STRUCTURE CONTAINING H3MM18
------RC-- +-----------------------------7ux9_E +-7 ------RT-- ! +-----------------------------6px1_A ! ------RARA ! +6a5l_g ! +--------------1 ------RG-- ! ! +8upf_G +-8 +---4 ------RG-- ! ! ! ! +8txv_G ! ! ! +-------------3 --HGRTRG-- ! ! +-5 +8rbx_V ! ! ! ! ------RT-- --9 ! ! ! +8u14_G ! +----------6 +-----------------2 ------RC-- ! ! +7yqk_C ! ! ------RA-- ! +------------------7e9c_F ! RG-------- +-----------------------------7ccr_H |
> 7dci_A:CRYSTAL STRUCTURE OF HSF2 DNA-BINDING DOMAIN IN COMPLEX WITH 2-SITE HSE DNA IN THE HEAD-TO-HEAD ORIENTATION
KTHG---------- +--------5hdn_C +-----------2 ----NCTTNAVTNT L ! +--------1pp7_U +----3 ----DCKT--RGYA L ! ! +5jvt_A --4 +-------------------1 ----DCKT--RGYA L ! +4bnc_A ! ----QCKT--RGNT L +-------------------------8smh_F |
> 7dvv_A:HEME SENSOR PROTEIN PEFR FROM STREPTOCOCCUS AGALACTIAE BOUND TO OPERATOR DNA (28-MER)
----RGSTRTSTHG----------RA---- L +---------------3zpl_B +-----2 --DCLT--AGTTRG----RG----RA---- L ! ! +5h3r_A +-------3 +---------------1 ------------RC--YG----KT------ ! ! +2acj_B +-4 ! TT----KATTQTTG--LTRTKA----FTYT L ! ! +---------------------2p7c_B --5 ! ----------------YG------------ ! +-----------------------------3eyi_B ! ----------NCTTNAVTNT---------- L +-----------------------------1pp7_U |
> 7e8d_H:NSD2 E1099K MUTANT BOUND TO NUCLEOSOME
RG---- +-----------------------------7ccr_H ! --RG-- ! +8txv_G ! +-------2 --RG-- ! ! +8upf_G ! +------4 --RARA ! ! ! +6a5l_g --9 ! +-------1 --RC-- ! +-----5 +7yqk_C ! ! ! --RT-- ! ! ! +8u14_G ! +-6 +-------------3 --RG-- ! ! ! +8rbx_V ! +--7 ! --RC-- ! ! ! +--------------------7ux9_E +----8 ! --RT-- ! +---------------------6px1_A ! --RA-- +------------------------7e9c_F |
> 7e9c_A:CRYO-EM STRUCTURE OF THE 1:1 ORC1 BAH DOMAIN IN COMPLEX WITH NUCLEOSOME
RG-------- +8jh2_e +--------------1 RG----RT-- +----------7 +6px1_A ! ! ------RC-- ! +--------------7ux9_E ! ------RA-- ! +-----8rbx_M ! +---------------5 ------RA-- +--10 ! +-----7e9c_F ! ! +-8 ------RT-- ! ! ! ! +8u14_G ! ! ! ! +--------------2 ------RG-- ! ! ! +------6 +8upf_G ! +--9 ! ------RC-- ! ! +--------------7yqk_C -11 ! ------RG-- ! ! +8txv_G ! +---------------------4 ------RARA ! ! +6a5l_g ! +-3 ----HGRG-- ! +8rbx_V ! --RG------ +-----------------------------7ccr_H |
> 7e9c_D:CRYO-EM STRUCTURE OF THE 1:1 ORC1 BAH DOMAIN IN COMPLEX WITH NUCLEOSOME
RG-------- +-----------------------------7ccr_H +-8 ------RA-- ! +-----------------------------7e9c_F ! ------RT-- ! +8u14_G ! +-------2 ------RG-- ! ! +8upf_G ! +----------4 ------RARA --9 ! ! +6a5l_g ! ! +-------1 ------RC-- ! +-------5 +7yqk_C ! ! ! ------RG-- ! ! ! +8txv_G ! +-6 +-----------------3 --HGRTRG-- ! ! ! +8rbx_V +-7 ! ------RC-- ! +--------------------------7ux9_E ! ------RT-- +---------------------------6px1_A |
> 7e9c_G:CRYO-EM STRUCTURE OF THE 1:1 ORC1 BAH DOMAIN IN COMPLEX WITH NUCLEOSOME
----RG-- +-----------------------------8upf_G ! ----RARA ! +6a5l_g ! +-1 ----RG-- ! +--------------3 +8txv_G ! ! ! ----RC-- --9 +-6 +7yqk_C ! ! ! ----RT-- ! ! ! +8u14_G ! +------7 +-------------4 HGRTRG-- ! ! ! +8rbx_V ! ! ! ----RA-- +-----8 +----------------7e9c_F ! ----RA-- ! +7xsx_a ! +--------------2 ----RC-- +--------5 +7ux9_E ! ----RT-- +--------------6px1_A |
> 7ea8_A:HUMAN SETD2 BOUND TO A NUCLEOSOME CONTAINING ONCOHISTONE MUTATIONS
--RG------------------ +5z3u_A +--------------1 --RG------------RT---- +--------9 +6px1_A ! ! --RT--RG-------------- ! +--------------6pww_K ! --RG------------RT---- ! +------------------7zs9_e ! +-12 --------LT------------ ! ! ! +-----7ywx_E ! ! +------------6 ----------------RA---- -16 +-13 +-----7e9c_F ! ! ! --RT----LA------RG---- ! ! ! +--------------7unc_a ! ! +-----10 HGRGYG--QC------RG---- ! ! ! +7y7i_E ! ! +--------------4 ----------------RC---- ! ! +7ux9_E ! ! --RCYA----------RG---- +-15 +-----------------7ccr_A ! ! ------------IT-------- ! ! +------3wkj_D ! +---11 +----7 ----------------RA--RA ! ! ! ! ! +6a5l_g ! ! ! ! +------2 ----------------RC---- ! ! +-----8 +7yqk_C ! ! ! ------------------KG-- +-14 ! +7nkx_f ! +----------5 ----------------RG---- ! +8upf_G ! ----------------RT---- ! +7kbd_C +----------------------3 ----------HG--RTRG---- +8rbx_V |
> 7eg6_A:SNF5 FINGER HELIX BOUND TO THE NUCLEOSOME
RG-------- +8jh2_e +---------------1 RG----RT-- +------5 +6px1_A ! ! ------RC-- +-7 +---------------7ux9_E ! ! ------RA-- +--8 +----------------------7e9c_F ! ! ------RC-- ! +------------------------7yqk_C --9 ------RT-- ! +8u14_G ! +---------------2 ------RG-- ! ! +8upf_G +-----------6 ------RARA ! +6a5l_g ! +-3 ------RG-- +--------------4 +8txv_G ! --HGRTRG-- +8rbx_V |
> 7egp_S:THE STRUCTURE OF SWI/SNF-NUCLEOSOME COMPLEX
LC------ +8bvw_e +--------------1 ----RT-- +-------9 +6px1_A ! ! ----RC-- +-10 +--------------7ux9_E ! ! ----RC-- ! +----------------------7yqk_C ! LA--RG-- ! +------7unc_a ! +------6 ----RA-- -11 ! ! +--7xsx_a ! ! +---5 ----RA-- ! +-7 +--7e9c_F ! ! ! ----RT-- ! ! ! +8u14_G ! ! +-------------2 ----RG-- +--------8 +8upf_G ! ----RARA ! +6a5l_g ! +-3 ----RG-- +-------------4 +8txv_G ! --HGRG-- +8rbx_V |
> 7el3_B:CRYSTAL STRUCTURE OF HPAR-DNA COMPLEX FROM ACINETOBACTER BAUMANNII
--ET--RGTCTGSTRG----KT-- L +6q2b_B +--------------1 VT--HTPTSA--TTKG------YT L +--------------2 +9c4c_G ! ! --------------RC--YG---- +-3 +--------------2acj_B ! ! ------RGTCTA--RGNT--RT-- L --4 +-----------------------------4fx4_B ! ----ITRGECSCSGKG-------- L +-----------------------------5i2d_R |
> 7jgr_B:STRUCTURE OF DROSOPHILA ORC BOUND TO DNA (84 BP) AND CDC6
TTKATTQTTG--LTRT----KA----FTYT L +-----2p7c_B +---1 --------RC--YG----------KT---- +-------------------2 +-----2acj_B ! ! ------NASTRGHT--STFT---------- L +-3 +---------1vtn_C ! ! ------------YG---------------- +-4 +-----------------------------3eyi_B ! ! ----------------------NA------ L --5 +-----------------------------1b72_B ! --------NT----NA----RG-------- L +-----------------------------4cyc_B |
> 7jgr_D:STRUCTURE OF DROSOPHILA ORC BOUND TO DNA (84 BP) AND CDC6
TTKATTQTTG----LTRT----KA--FTYT-- L +-----2p7c_B +---3 --------RC----YG--------KT------ +---------4 +-----2acj_B ! ! ------NAST--RGHT--STFT--------RT L +-----5 +---------1vtn_C ! ! ------NAST--RGHT--STLT---------- L ! ! +-----7cby_C --6 +-------------2 ------NAST--RTHT--STLT---------- L ! +-----4lg0_A ! --DCKT--RG----RGYA----KA-------- L ! +5jvt_A +------------------------1 --DCKT--RGST--RGYA-------------- L +4bnc_A |
> 7jgr_E:STRUCTURE OF DROSOPHILA ORC BOUND TO DNA (84 BP) AND CDC6
------NASTRGHT--STFT------RT L +--------------------1vtn_C +--2 TTKATTQTTG--LTRT----KAFTYT-- L ! ! +-----2p7c_B +-----3 +--------------1 --------RC--YG-------------- ! ! +-----2acj_B --4 ! ------NASTRGHT--STLT-------- L ! +-----------------------7cby_C ! ------------YG-------------- +-----------------------------3eyi_B |
> 7jgr_G:STRUCTURE OF DROSOPHILA ORC BOUND TO DNA (84 BP) AND CDC6
TTKATTQTTG----LTRT----KA--FTYT L +------2p7c_B +-------3 --------RC----YG--------KT---- ! +------2acj_B +---------5 ------NAST--RGHT--STFT-------- L ! ! +------1vtn_C ! +-------4 ------NAST--RTHT--STLT-------- L +---6 +------4lg0_A ! ! --DCKT--RGST--RGYA------------ L ! ! +4bnc_A --7 +-----------------------1 --DCKT--RG----RGYA----KA------ L ! +5jvt_A ! ------NAST--RTHT--ST---------- L ! +---3l2c_A +------------------------2 ------NAST--RGHT--STLT-------- L +---7cby_C |
> 7jps_A:ORC-DNA: HUMAN ORIGIN RECOGNITION COMPLEX (ORC) WITH DNA BOUND IN THE CORE
----------NAST--HT--STFT-------- L +------1vtn_C +-------------3 --ST----NAST--RTHT--STLT-------- L ! +------4lg0_A +---5 TT--KATTQTTG----LTRT----KA--FTYT L ! ! +------2p7c_B ! +-------------2 ----------RC----YG--------KT---- +---6 +------2acj_B ! ! ----DCKT--RGST--RGYA------------ L ! ! +4bnc_A --7 +-----------------------1 ----DCKT--RG----RGYA----KA------ L ! +5jvt_A ! ----------NAST--HT--STLT-------- L ! +-------7cby_C +--------------------4 --------NAST--RTHT--ST---------- L +-------3l2c_A |
> 7jps_D:ORC-DNA: HUMAN ORIGIN RECOGNITION COMPLEX (ORC) WITH DNA BOUND IN THE CORE
RT--LA--NTHGTTETYTRG------------------ L +1f4k_B +----------1 ------------------NAST--HT--STFT------ L ! +1vtn_C +-------3 ----------------NAST--RGHT--STLT------ L ! ! +-----7cby_C +-----4 +----2 ------ST--------NA----RTHT--STLT------ L ! ! +-----4lg0_A +----5 ! --TT--------KATTQTTG----LTRT----KAFTYT L ! ! +------------------2p7c_B --6 ! ----------------NAST--RTHT--ST-------- L ! +------------------------3l2c_A ! ------------------------YG------------ +-----------------------------3eyi_B |
> 7jsa_J:CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF HUMAN TRANSCRIPTION FACTOR ERF IN THE REDUCED FORM, IN COMPLEX WITH DOUBLE-STRANDED DNA ACCGGAAGTG
----DCKT--RG----RGYA--KA L +5jvt_A +--------------------1 ----DCKT--RGST--RGYA---- L +-------2 +4bnc_A ! ! --------RGNT--RGSTATRA-- L +-3 +---------------------2o6g_G ! ! ----QCKT--RGAT--RGNT---- L +-4 +-----------------------------8smh_F ! ! ----NCTTNA------VTNT---- L --5 +-----------------------------1pp7_U ! KTHG-------------------- +-----------------------------5hdn_C |
> 7jzv_N:CRYO-EM STRUCTURE OF THE BRCA1-UBCH5C/BARD1 E3-E2 MODULE BOUND TO A NUCLEOSOME
--------RG-- +-----------------------------8upf_G ! --------RT-- ! +8u14_G ! +--------------3 --------RC-- ! ! +7yqk_C ! +-8 --------RG-- -12 ! ! +8txv_G ! +-------9 +--------------4 --------RARA ! ! ! +6a5l_g ! ! ! ----HGRTRG-- ! ! +---------------8rbx_V ! ! --------RGRG +----11 +------8kcb_A ! +---------------5 --------RA-- ! ! +------7e9c_F ! ! --------RA-- ! ! +7xsx_a +-10 +--------------1 --------RC-- ! ! +7ux9_E ! +-6 --LA----RG-- ! ! ! +7unc_a +-------7 +--------------2 --------RT-- ! +6px1_A ! LC---------- +--------------8bvw_e |
> 7k5x_H:CRYO-EM STRUCTURE OF A CHROMATOSOME CONTAINING HUMAN LINKER HISTONE H1.0
RG------ +-----------------------------7ccr_H ! ----RARA ! +6a5l_g ! +--------------1 ----RG-- ! +-------4 +8upf_G --9 ! ! ----RC-- ! +-7 +--------------7yqk_C ! ! ! ----RA-- ! ! +----------------------7e9c_F ! ! ----RT-- +----8 +-----------8u14_G ! +-----3 ----RC-- ! ! +-----------7ux9_E ! +--5 ----RG-- ! ! ! +8txv_G +---6 +----------------2 --HGRG-- ! +8rbx_V ! ----RT-- +--------------------6px1_A |
> 7k60_H:CRYO-EM STRUCTURE OF A CHROMATOSOME CONTAINING HUMAN LINKER HISTONE H1.10
RG------ +-----------------------------7ccr_H ! ----RG-- ! +8txv_G ! +-------1 ----RG-- ! ! +8upf_G ! +----------4 ----RARA ! ! ! +6a5l_g --9 ! +-------2 ----RC-- ! +-5 +7yqk_C ! ! ! ----RT-- ! ! ! +8u14_G ! +-6 +-----------------3 --HGRG-- ! ! ! +8rbx_V ! +--7 ! ----RC-- ! ! ! +--------------------7ux9_E +----8 ! ----RT-- ! +---------------------6px1_A ! ----RA-- +------------------------7e9c_F |
> 7k63_H:CRYO-EM STRUCTURE OF A CHROMATOSOME CONTAINING CHIMERIC LINKER HISTONE GH1.10-NCH1.4
RG------ +-----------------------------7ccr_H ! ----RT-- ! +8u14_G ! +--------------1 ----RG-- ! ! +8upf_G ! ! ----RARA ! +-----5 +6a5l_g --9 ! ! +-2 ----RG-- ! ! ! +----------3 +8txv_G ! ! ! ! ! ----RC-- ! +-6 +---4 +7yqk_C ! ! ! ! --HGRG-- ! ! ! +----------8rbx_V ! +--7 ! ----RC-- ! ! ! +--------------------7ux9_E +----8 ! ----RT-- ! +---------------------6px1_A ! ----RA-- +------------------------7e9c_F |
> 7k78_E:ANTIBODY AND NUCLEOSOME COMPLEX
--RC-- +-----------------------------7ux9_E +-6 --RT-- +-7 +-----------------------------6px1_A ! ! --RA-- ! +-----------------------------7e9c_F ! --RG-- ! +8txv_G --8 +---------1 --RG-- ! ! +8upf_G ! +--4 --RT-- ! ! ! +8u14_G ! ! +--------3 --RARA +----------------5 ! +6a5l_g ! +-2 --RC-- ! +7yqk_C ! HGRG-- +------------8rbx_V |
> 7kbd_C:NUCLEOSOME IN INTERPHASE CHROMOSOME FORMED IN XENOPUS EGG EXTRACT (OLIGO FRACTION)
----RARA +6a5l_g +--------------1 ----RG-- ! +8upf_G +-5 ----RT-- ! ! +8u14_G +-------6 +-------------2 ----RC-- ! ! +7yqk_C ! ! HGRTRG-- ! +--------------8rbx_V --9 ----RG-- ! +-----------8txv_G ! +-------4 ----RC-- ! ! +-----------7ux9_E +--8 ----RGRG ! +------8kcb_A ! +-----------3 ----RA-- +-7 +------7e9c_F ! ----RT-- +------------------6px1_A |
> 7lv9_A:MARSEILLEVIRUS HETEROTRIMERIC (HEXAMERIC) NUCLEOSOME
------RC-- +-----------------------------7ux9_E ! LA----RG-- ! +7unc_a ! +-----------------1 ------RT-- ! ! +6px1_A ! ! LC-------- ! +-8 +------8bvw_e -11 ! ! +------5 ------RA-- ! ! ! ! ! +--7xsx_a ! ! +---7 +---4 ------RA-- ! +-9 ! +--7e9c_F ! ! ! ! ------RG-- ! ! ! +-------------8upf_G ! ! ! ------RC-- +-------10 +------------------7yqk_C ! ------RG-- ! +8txv_G ! +---------3 ------RARA ! ! ! +6a5l_g +---------6 +-2 --HGRTRG-- ! +8rbx_V ! ------RT-- +----------8u14_G |
> 7lyb_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE IN COMPLEX WITH BRCA1-BARD1-UBCH5C
------RT-- +8u14_G +------------------1 ------RG-- ! +8upf_G ! ------RG-- +----10 +8txv_G ! ! +-------------5 ------RC-- ! ! ! +7yqk_C ! +---9 ------RARA ! ! +6a5l_g ! +--------------4 --HGRTRG-- -12 +8rbx_V ! ------RGRG ! +------8kcb_A ! +---------------6 ------RA-- ! ! +------7e9c_F ! ! ------RA-- ! ! +7xsx_a +-11 +--------------2 ------RC-- ! ! +7ux9_E ! +-7 LC-------- ! ! ! +8bvw_e +-------8 +--------------3 ------RT-- ! +6px1_A ! LA----RG-- +--------------7unc_a |
> 7m1x_C:CRYO-EM STRUCTURE OF NUCLEOSOME CONTAINING MOUSE HISTONE VARIANT H2A.Z
----RARA +6a5l_g +-1 ----RG-- +---------2 +8txv_G ! ! ----RG-- +---------5 +8upf_G ! ! ----RC-- +-7 +---------7yqk_C ! ! ----RC-- +-8 +-------------------7ux9_E ! ! ----RT-- ! ! +8u14_G ! +--------------------3 HGRTRG-- --9 +8rbx_V ! ----RGRG ! +-----8kcb_A ! +------------4 ----RA-- +---6 +-----7e9c_F ! ----RT-- +------------------6px1_A |
> 7mcs_F:CRYO-ELECTRON MICROSCOPY STRUCTURE OF TNSC(1-503)A225V BOUND TO DNA
----RC-------------- +---------------7mcs_F +----------1 --------RT---------- +-2 +---------------7jk2_A ! ! --TT--RA------------ +-3 +--------------------------7jps_B ! ! FT----------YT------ --4 +---------------------------6qem_L ! ----------MT--RTRTIT L +----------------------------7jy6_F |
> 7n8n_B:MELBOURNEVIRUS NUCLEOSOME LIKE PARTICLE
------RARA +6a5l_g +-------------------1 ------RG-- ! +8upf_G ! ------RG-- +-6 +--------8txv_G ! ! +-------4 ------RA-- ! ! ! +--------7e9c_F ! +--5 ------RGRG +-7 ! +8kcb_A ! ! +----------------2 --HGRTRG-- ! ! +8rbx_V +--------8 ! ------RC-- ! ! +-------------------7ux9_E ! ! ------RT-- --9 ! +8u14_G ! +-------------------3 ------RC-- ! +7yqk_C ! RG-------- +-----------------------------7ccr_H |
> 7nkx_a:RNA POLYMERASE II-SPT4/5-NUCLEOSOME-CHD1 STRUCTURE
----RA-- +7xsx_a +--------------1 ----RC-- ! +7ux9_E +--8 LC------ ! ! +8bvw_e ! +--------------2 ----RT-- ! +6px1_A ! ----RARA +-10 +6a5l_g ! ! +-3 ----RG-- ! ! +---------4 +8txv_G ! ! ! ! ----RG-- ! ! +----7 +8upf_G ! ! ! ! --HGRG-- -11 +--9 +---------8rbx_V ! ! ----RT-- ! ! +8u14_G ! +-------------5 ----RC-- ! +7yqk_C ! LA--RG-- ! +------7unc_a +------------6 ----RA-- +------7e9c_F |
> 7nkx_f:RNA POLYMERASE II-SPT4/5-NUCLEOSOME-CHD1 STRUCTURE
----RA-- +-----------------------------7e9c_F ! ----RT-- ! +8u14_G ! +--------------1 ----RG-- ! ! +8upf_G ! +-8 ----RG-- ! ! ! +8txv_G ! ! +-------------5 ----RC-- ! +-----9 +7yqk_C -12 ! ! ----RARA ! ! ! +6a5l_g ! ! +---------------4 --HGRG-- ! ! +8rbx_V ! +-10 ----RA-- ! ! ! +8rbx_M ! ! ! +-2 LA--RG-- ! ! ! +---------3 +7unc_a ! ! ! ! ! ----RT-- +---11 +-----------7 +6px1_A ! ! ----RC-- ! +---------7ux9_E ! LC------ ! +-----8bvw_e +------------------6 ----RA-- +-----7xsx_a |
> 7on1_e:CENP-A NUCLEOSOME IN COMPLEX WITH CENP-C
------RC-- +-----------------------------7ux9_E ! LC-------- ! +8bvw_e ! +------------------1 ------RT-- ! ! +6px1_A ! ! LA----RG-- ! ! +------7unc_a ! ! +------5 ------RA-- ! +---8 ! ! +--7xsx_a -11 ! ! ! +---4 ------RA-- ! ! ! +-6 +--7e9c_F ! ! ! ! ! ------RG-- ! ! ! ! ! +8txv_G ! ! +---7 +-------------2 ------RG-- ! +-9 ! +8upf_G ! ! ! ! ------RARA ! ! ! ! +6a5l_g ! ! ! +--------------3 ------RC-- +-----10 ! +7yqk_C ! ! ------RT-- ! +----------------------8u14_G ! --HGRTRG-- +----------------------8rbx_V |
> 7otq_E:CRYO-EM STRUCTURE OF ALC1/CHD1L BOUND TO A PARYLATED NUCLEOSOME
RG-------- +8jh2_e +---------------1 RG----RT-- +------5 +6px1_A ! ! ------RC-- +---7 +---------------7ux9_E ! ! ------RA-- ! +----------------------7e9c_F ! ------RARA ! +6a5l_g --9 +--------------2 ------RC-- ! +----4 +7yqk_C ! ! ! ------RG-- ! +------6 +--------------8upf_G ! ! ! ------RG-- +-8 +-------------------8txv_G ! ------RT-- ! +-8u14_G +------------------------3 --HGRTRG-- +-8rbx_V |
> 7pet_H:THE 4X177 NUCLEOSOME ARRAY CONTAINING H1
RG------ +-----------------------------7ccr_H +-8 ----RC-- ! +-----------------------------7yqk_C ! ----RARA ! +6a5l_g ! +--------------1 ----RG-- ! ! +8upf_G --9 +---4 ----RG-- ! ! ! +8txv_G ! +---5 +-------------2 --HGRG-- ! ! ! +8rbx_V ! ! ! ----RA-- ! ! +------------------7e9c_F +------7 ----RT-- ! +-----------8u14_G ! +--------3 ----RC-- +-6 +-----------7ux9_E ! ----RT-- +--------------------6px1_A |
> 7prw_B:THE GLUCOCORTICOID RECEPTOR IN COMPLEX WITH VELSECORAT, A PGC1A COACTIVATOR FRAGMENT AND SGK 23BP
--ECKGAG--RG---- L +-----------------------------4ond_A +-2 ----KGVT--RG---- L +-3 +-----------------------------2c7a_B ! ! --ECKGAG--KTRG-- L +-4 +-----------------------------4aa6_B ! ! CAECKG--KGRG---- L ! ! +---1cit_A +-5 +-------------------------1 --EAKG--KTRG---- L ! ! +---4umm_A --6 ! --EAKG--RTRT--RT ! +-----------------------------4umm_E ! --ECKG----RA---- L +-----------------------------5krb_G |
> 7psx_B:STRUCTURE OF HOXB13 BOUND TO HYDROXYMETHYLATED DNA
RT----VTKGNA------KA-- L +2lkx_A +-1 RA----IAQTNA---------- L +---------------------4 +5ego_B ! ! RT----NT--NA----IARG-- L ! +-1b72_B ! RT--QTVAQTNA---------- L ! +-8osb_E +---7 +--3 RT----IAQCNA----MG---- L ! ! ! +-1b72_A ! ! +------------5 ------NCICNARGRG------ L ! ! ! ! +4xrm_B +-8 +-----6 +---2 --RT--NT--NA----IARG-- L ! ! ! +4cyc_B ! ! ! RC----IAQCNA----YC---- L --9 ! +-----------------3rkq_B ! ! ------VTCCNA----QA--RT L ! +---------------------------8g87_X ! ----------------YCFAKC L +---------------------------6pe2_B |
> 7q3o_C:STRUCTURE OF CDX1 BOUND TO HYDROXYMETHYLATED DNA
RARA----IAQTNA------ L +-5ego_B +-----------------------2 --RT----NT--NAIARG-- L ! +-1b72_B ! --RT--QTVAQTNA------ L ! +8osb_E ! +---1 --RT----VTKGNA--KA-- L +-7 +--------3 +2lkx_A ! ! ! ! ----RT--NT--NAIARG-- L ! ! +------5 +---4cyc_B ! ! ! ! --RT----IAQCNAMG---- L ! ! ! ! +----1b72_A +-8 +-----6 +-------4 --RC----IAQCNAYC---- L ! ! ! +----3rkq_B ! ! ! --------NCICRG------ L --9 ! +-------------------4xrm_B ! ! --------VTCCNAQA--RT L ! +---------------------------8g87_X ! --------------YCFAKC L +---------------------------6pe2_B |
> 7r5s_T:STRUCTURE OF THE HUMAN CCAN BOUND TO ALPHA SATELLITE DNA
--RA-- +-----------------------------7e9c_F +-7 --RC-- ! +-----------------------------7yqk_C ! --RARA ! +6a5l_g ! +--------------1 --RG-- ! ! +8upf_G --8 +--4 --RG-- ! ! ! +8txv_G ! ! +-------------2 HGRG-- ! +--5 +8rbx_V ! ! ! --RT-- ! ! ! +-----------8u14_G +--------6 +-----3 --RC-- ! +-----------7ux9_E ! --RT-- +--------------------6px1_A |
> 7r5s_W:STRUCTURE OF THE HUMAN CCAN BOUND TO ALPHA SATELLITE DNA
------RA-- +-----------------------------7e9c_F +-5 ------RC-- +-6 +-----------------------------7ux9_E ! ! ------RT-- +-7 +-----------------------------6px1_A ! ! ------RG-- ! +-----------------------------8upf_G ! ------RARA +-8 +6a5l_g ! ! +--------------1 ------RC-- ! ! ! +7yqk_C ! ! +-------3 ------RG-- ! ! ! ! +8txv_G --9 +------4 +-------------2 --HGRTRG-- ! ! +8rbx_V ! ! ------RT-- ! +----------------------8u14_G ! RG-------- +-----------------------------7ccr_H |
> 7scy_H:NUC147 BOUND TO SINGLE BRCT
--RT-- +8u14_G +---------2 --RG-- ! +8upf_G +--------4 --RARA ! ! +6a5l_g ! ! +-1 --RG-- +-5 +---------3 +8txv_G ! ! ! HGRG-- ! ! +8rbx_V +--6 ! --RC-- ! ! +------------------7ux9_E +-7 ! --RT-- ! ! +--------------------6px1_A --8 ! --RA-- ! +-----------------------7e9c_F ! --RC-- +-------------------------7yqk_C |
> 7t8k_B:BRXR FROM ACINETOBACTER BREX TYPE I PHAGE RESTRICTION SYSTEM BOUND TO DNA
--TTKATTQTTGLTRT----KA-- L +-----------------2p7c_B +-----------2 ------------YG---------- ! ! +---3eyi_B +-3 +-------------1 ----------RCYG--------KT ! ! +---2acj_B --4 ! ----------NT--NAIARG---- L ! +-----------------------------4cyc_B ! RC--------IAQCNAYC------ L +-----------------------------3rkq_B |
> 7tdx_A:STRUCTURE OF FOXP3-DNA COMPLEX
----------NAST--RGHT--STLT-------- L +7cby_C +-----------2 ----------NAST--RGHT--STFT-------- L ! +1vtn_C +------5 --ST------NAST--RTHT--ST---------- L ! ! +3l2c_A +--6 +------------1 ----------NAST--RTHT--STLT-------- L ! ! +4lg0_A ! ! ----RGSTRTSTHG-------------------- L +--8 +-------------------3zpl_B ! ! TT----KATTQTTG----LTRT----KA--FTYT L ! ! +-----2p7c_B ! +----------------4 ----------RC------YG--------KT---- +-9 +-----2acj_B ! ! --------KT--RG----RGYA----KA------ L ! ! +5jvt_A ! ! +--------------------3 --------KT--RGST--RGYA------------ L +-10 +---7 +4bnc_A ! ! ! ----------RGNT--RGSTAT--RA-------- L ! ! +---------------------2o6g_G -11 ! --------KT--RGAT--RGNT------------ L ! +---------------------------8smh_F ! ------------------YG-------------- +-----------------------------3eyi_B |
> 7unc_a:POL II-DSIF-SPT6-PAF1C-TFIIS COMPLEX WITH REWRAPPED NUCLEOSOME
RG------RT-- +----------------------6px1_A ! --------RA-- +-10 +7e9c_F ! ! +--------------2 --------RG-- ! +-------7 +7e9c_G ! ! --RG-------- ! +--------------7ccr_H ! RG---------- ! +8jh2_e -12 +-------------------3 --------RC-- ! +----9 +7ux9_E ! ! ! --------RC-- ! ! +-------------------7yqk_C ! ! --------RA-- ! ! +--7xsx_a +-11 +-------5 --------RARA ! ! ! +6a5l_g ! ! +--1 --------RG-- ! +------6 +8upf_G ! ! ! --------RG-- ! ! ! +8txv_G +------8 +---------4 ----HGRTRG-- ! +8rbx_V ! --------RT-- +-----------------8u14_G |
> 7und_e:POL II-DSIF-SPT6-PAF1C-TFIIS-NUCLEOSOME COMPLEX (STALLED AT +38)
RG----RT-- +-----------------------------6px1_A ! RG-------- ! +8jh2_e ! +-----------------3 ------RC-- ! +---6 +7ux9_E --9 ! ! ------RA-- ! +---7 +------------------7e9c_F ! ! ! ------RC-- ! ! +----------------------7yqk_C ! ! ------RARA +--8 +6a5l_g ! +-1 ------RG-- ! +--------------2 +8txv_G ! ! ! ------RG-- +-----------5 +8upf_G ! ------RT-- ! +8u14_G +-------------4 --HGRTRG-- +8rbx_V |
> 7ux9_A:ARABIDOPSIS DDM1 BOUND TO NUCLEOSOME (H2A.W, H2B, H3.3, H4, WITH 147 BP DNA)
----RARA +6a5l_g +--------------1 ----RC-- +----2 +7yqk_C ! ! ----RG-- +----3 +--------------8upf_G ! ! HGRTRG-- +-4 +-------------------8rbx_V ! ! ----RA-- +-5 +------------------------7e9c_F ! ! ----RC-- --6 +-------------------------7ux9_E ! ----RT-- +--------------------------6px1_A |
> 7ux9_C:ARABIDOPSIS DDM1 BOUND TO NUCLEOSOME (H2A.W, H2B, H3.3, H4, WITH 147 BP DNA)
------RARA +6a5l_g +--------------1 ------RC-- +--------7 +7yqk_C ! ! ------RG-- ! +--------------8upf_G ! ------RT-- ! +------------8u14_G +---10 +-----6 ------RT-- ! ! ! +------------6px1_A ! ! ! ------RA-- ! ! ! +7xsx_a ! +----9 +-----------3 ------RC-- ! ! ! +7ux9_E ! ! +----5 ------RG-- -11 ! ! ! +8txv_G ! ! ! +----------4 ----HGRG-- ! +-8 +8rbx_V ! ! ------RA-- ! ! +7e9c_F ! +----------------2 ------RG-- ! +7e9c_G ! RAAANA---- +----------------------------1jfi_B |
> 7ux9_E:ARABIDOPSIS DDM1 BOUND TO NUCLEOSOME (H2A.W, H2B, H3.3, H4, WITH 147 BP DNA)
RG---- +---------6pww_K +-------------------1 --RG-- +-2 +---------7e9c_G ! ! --RT-- --3 +-----------------------------7jzv_N ! --RART +-----------------------------3x1t_G |
> 7v5n_B:CRYSTAL STRUCTURE OF FAB FRAGMENT OF BEVACIZUMAB BOUND TO DNA APTAMER
TGTGNGYTNGWGNTTTYTTT--YGHGYTYTWG-- L +-7v5n_B +-1 ------------------------------YA-- +---------------------2 +-3vw3_H ! ! ----SCYA--------YT---------------- L --3 +--2fr4_B ! --------------------ST----------WG +------------------------7v5n_E |
> 7v94_A:CRYO-EM STRUCTURE OF THE CAS12C2-SGRNA-TARGET DNA TERNARY COMPLEX
----NGLGQGQTQA--ECNC-- L +-----------------------------7way_A +-1 --------------------AT L +-2 +-----------------------------6ny2_Y ! ! --------------SC------ --3 +-----------------------------7c7l_A ! LTRT------------------ L +-----------------------------7pla_A |
> 7vdt_B:THE MOTOR-NUCLEOSOME MODULE OF HUMAN CHROMATIN REMODELING PBAF- NUCLEOSOME COMPLEX
------RA-- +-----------------------------7e9c_F ! ------RARA ! +6a5l_g ! +--------------1 ------RG-- ! ! +8upf_G ! +-7 ------RT-- ! ! ! +8u14_G ! ! +-------------4 ------RC-- +-11 +------8 +7yqk_C ! ! ! ! ------RG-- ! ! ! ! +8txv_G ! ! ! +-------------5 ----HGRG-- ! ! ! +8rbx_V ! ! +--9 ------RA-- ! ! ! ! +7xsx_a ! ! ! ! +-2 --LA--RG-- -12 ! ! ! +---------3 +7unc_a ! +---10 ! ! ! ------RT-- ! ! +-----------6 +6px1_A ! ! ! ------RC-- ! ! +---------7ux9_E ! ! --LC------ ! +------------------------8bvw_e ! RG-------- +-----------------------------7ccr_H |
> 7vo0_N:STREPTOMYCES COELICOLOR ZINC UPTAKE REGULATOR COMPLEXED WITH ZINC AND DNA (TRIMER OF DIMERS)
TT------KATTQTTG----LTRT----KA--FTYT L +-----2p7c_B +------------4 --------------RC----YG--------KT---- +----------5 +-----2acj_B ! ! ------------NAST--RTHT--STLT-------- L +-6 +------------------4lg0_A ! ! --------------------YG-------------- +-7 +-----------------------------3eyi_B ! ! ------------NAST--RTHT--ST---------- L ! ! +---3l2c_A +-8 +-------------------------3 --------------NAST--HT--STLT-------- L ! ! +---7cby_C +-9 ! --------------NT------NA--IARG------ L ! ! +-----------------------------4cyc_B ! ! --VTSARGTA--RT---------------------- L ! +-----------------------------6za3_B -10 ------------QTVA----QTNA------------ L ! +8osb_E ! +-1 --------------VT----KGNA----KA------ L +-----------------------------2 +2lkx_A ! --------------IA----QTNA------------ L +5ego_B |
> 7vou_C:THE CRYSTAL STRUCTURE OF HUMAN FORKHEAD BOX PROTEIN IN COMPLEX WITH DNA 1
----------------NAST--RGHT--STLT-------- L +-7cby_C +----1 ----------------NAST--RGHT--STFT-------- L +--------------4 +-1vtn_C ! ! ------ST--------NAST--RTHT--STLT-------- L ! +------4lg0_A +--8 --TT--------KATTQTTG----LTRT----KA--FTYT L ! ! +------------------2p7c_B ! +--6 ----------RGSTRTSTHG--------------RA---- L ! ! +-3zpl_B +--9 +----------------3 ----------------RC------YG-------------- ! ! +-2acj_B ! ! ----------------NAST--RTHT--ST---------- L ! ! +----------3l2c_A ! ! +----------5 ----------------RGNT--RGSTAT--RA-------- L +-10 +--7 +----------2o6g_G ! ! ! RT--LA--NTHGTTETYTRG-------------------- L ! ! +---------------------1f4k_B ! ! --------------KT--RG----RGYA----KA------ L -11 ! +-5jvt_A ! +-------------------------2 --------------KT--RGST--RGYA------------ L ! +-4bnc_A ! --------------KT--RGAT--RGNT------------ L +----------------------------8smh_F |
> 7vpz_N:CRYO-EM STRUCTURE OF STREPTOMYCES COELICOLOR TRANSCRIPTION INITIAL COMPLEX WITH ONE ZUR DIMER
RT------TCTGYTRT-------------- L +---------------7vpz_N +------1 --------------RC--YG--------KT +--2 +---------------2acj_B ! ! ------------NASTRTHT--STLT---- L +-3 +----------------------4lg0_A ! ! --VTSARGTA--RT---------------- L +-4 +-------------------------6za3_B ! ! --------------NT----NA--IARG-- L --5 +--------------------------4cyc_B ! --------------IA--QTNA-------- L +---------------------------5ego_B |
> 7wlr_D:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING KOMAGATAELLA PASTORIS HISTONES
--RC-- +-----------------------------7yqk_C ! --RARA ! +6a5l_g ! +--------------1 --RG-- ! ! +8upf_G ! +-----7 --RG-- -11 ! ! +8txv_G ! ! +-------------4 --RG-- ! +-9 +8rbx_V ! ! ! --RT-- ! ! ! +--------8u14_G ! ! +-----------5 --RA-- ! ! +--------7e9c_F +-----10 --RA-- ! +7xsx_a ! +--------------2 --RT-- ! ! +6px1_A ! +-6 LARG-- ! ! ! +7unc_a +-------8 +-------------3 --RC-- ! +7ux9_E ! LC---- +--------------8bvw_e |
> 7wlr_E:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING KOMAGATAELLA PASTORIS HISTONES
RG-------- +8jh2_e +---------------1 RG----RT-- +------6 +6px1_A ! ! ------RC-- +---7 +---------------7ux9_E ! ! ------RA-- ! +----------------------7e9c_F ! ------RG-- ! +8txv_G --9 +---------------2 ------RG-- ! ! +8upf_G ! +-------5 ------RT-- ! ! ! +-8u14_G ! ! +-------------4 ------RARA +--8 ! +6a5l_g ! +-3 --HGRTRG-- ! +8rbx_V ! ------RC-- +-----------------------7yqk_C |
> 7wlr_G:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING KOMAGATAELLA PASTORIS HISTONES
------RC-- +-----------------------------7yqk_C +-11 --HGRTRG-- ! +-----------------------------8rbx_V ! ------RG-- ! +8txv_G ! +-1 ------RG-- -12 +-----------------------4 +8upf_G ! ! ! ------RARA ! ! +6a5l_g ! ! ------RT-- ! ! +-----------8u14_G +----10 +------6 LA----RG-- ! ! +-----------7unc_a ! +---8 ------RGRG ! ! ! +------8kcb_A ! ! +-----------5 ------RA-- ! ! +------7e9c_F +-9 ------RA-- ! +7xsx_a ! +--------------2 ------RC-- ! ! +7ux9_E +-------7 LC-------- ! +8bvw_e +--------------3 ------RT-- +6px1_A |
> 7wnh_D:CRYSTAL STRUCTURE OF NURR1 BINDING TO NBRE
CAECKG--KGRG----RTRT L +----1cit_A +-----------3 --ECKGAG--RG-------- L ! +----4ond_A +-5 --ECKG----RA-------- L ! ! +-5krb_G ! +--------------2 --EAKG--KTRG-------- L --6 +-4umm_A ! --EAKG--RTRT--RT---- ! +4umm_E ! +--------------1 ----KGVT--RG-------- L +--4 +2c7a_B ! --ECKGAG--KTRG------ L +---------------4aa6_B |
> 7x74_H:CRYO-EM STRUCTURE OF STREPTOMYCES COELICOLOR TRANSCRIPTION INITIAL COMPLEX WITH TWO ZUR DIMERS
--------------RC----YG--------KT------ +-----------------------------2acj_B ! TT------KATTQTTG----LTRT----KA----FTYT L ! +--------2p7c_B ! +-------------4 --------------NAST--HT--STFT---------- L +-10 ! +--------1vtn_C ! ! +--7 --------------NAST--HT--STLT---------- L ! ! ! ! +-----7cby_C ! ! ! ! +------------3 ------------NAST--RTHT--STLT---------- L ! +---9 +---6 +-----4lg0_A +-11 ! ! ------------NAST--RTHT--ST------------ L ! ! ! +------------------3l2c_A ! ! ! ------RGSTRTSTHG----------------RA---- L +-12 ! +-------------------------3zpl_B ! ! ! --------------------YG---------------- ! ! +-----------------------------3eyi_B ! ! --------------NT------NA--IARG-------- L ! +-----------------------------4cyc_B +-13 --------------VT----KGNA----KA-------- L ! ! +2lkx_A ! ! +--------------1 --------------IA----QTNA-------------- L ! ! +---------5 +5ego_B ! ! ! ! --------------NC----ICNA--RGRG-------- L -14 +----8 +--------------4xrm_B ! ! ------------QTVA----QTNA-------------- L ! ! +---8osb_E ! +--------------------2 --------------IA----QCNA--YC---------- L ! +---3rkq_B ! --VTSARGTA--RT------------------------ L +-----------------------------6za3_B |
> 7xjg_C:CRYO-EM STRUCTURE OF E.COLI RETRON-EC86 IN COMPLEX WITH ITS EFFECTOR AT 2.5 ANGSTROM
--TT------KATTQTTG--LTRT----KA--FTYT L +-------2p7c_B +--2 ----------DCKT--RG--RGYA----KA------ L +-------------3 +-------5jvt_A ! ! --------------NASTRGHT--STFT-------- L ! +----------1vtn_C +----5 --------------------YG-------------- ! ! +---3eyi_B ! ! +------------1 ----------------RC--YG--------KT---- --6 +-------4 +---2acj_B ! ! ------DCLT--AGTTRG----RG------------ L ! +----------------5h3r_A ! RT--LANTHGTTETYTRG------------------ L +-----------------------------1f4k_B |
> 7xsx_a:RNA POLYMERASE II ELONGATION COMPLEX TRANSCRIBING A NUCLEOSOME (EC49)
LC-------- +8bvw_e +--1 ------RT-- +-----------6 +6px1_A ! ! ------RA-- +--9 +--7xsx_a ! ! ------RG-- ! +--------------8upf_G +-10 ------RA-- ! ! +8rbx_M ! ! +------2 LA----RG-- ! +----------7 +7unc_a ! ! ------RA-- +--------11 +------7e9c_F ! ! ------RT-- ! ! +-8u14_G ! ! +--------5 --HGRTRG-- ! ! ! +-8rbx_V ! +------8 ------RARA -12 ! +6a5l_g ! ! +-3 ------RG-- ! +---------4 +8txv_G ! ! ------RC-- ! +7yqk_C ! ------RC-- +---------------------------7ux9_E |
> 7xv6_B:CRYSTAL STRUCTURE OF THE HUMAN TR4 DNA-BINDING DOMAIN WITH C-TERMINAL EXTENSION (DBD-CTE) HOMODIMER BOUND TO DR1 RESPONSE ELEMENT
--EAKG--RTRT--RT +4umm_E +---1 CAECKG--KGRG---- L +------------2 +1cit_A ! ! --ECKGAG--RG---- L +------4 +---4ond_A ! ! --ECKG----RA---- L ! ! +----5krb_G +-5 +-----------3 --ECKGAG--KTRG-- L ! ! +----4aa6_B --6 ! --EAKG--KTRG---- L ! +-----------------------4umm_A ! ----KGVT--RG---- L +------------------------2c7a_B |
> 7xvn_C:STRUCTURAL BASIS FOR DNA RECOGNITION FEATURE OF RETINOID-RELATED ORPHAN RECEPTORS
CAECKG--KGRG----RTRT L +---1cit_A +-------------2 --EAKG--KTRG-------- L +-------4 +---4umm_A ! ! ----KGVT--RG--RC---- L ! +-----------------2c7a_B --6 --EAKG--RTRTRT------ ! +-4umm_E ! +--------------------1 --ECKGAG--RG-------- L ! ! +-4ond_A +--5 --ECKG----RA-------- L ! +----5krb_G +-----------------3 --ECKGAGKT---------- L +----4aa6_B |
> 7y7i_E:CHICKEN KNL2 IN COMPLEX WITH THE CENP-A NUCLEOSOME
RG----RT-- +-----------------------------6px1_A ! RG-------- ! +8jh2_e ! +-----------------2 ------RC-- ! +---4 +7ux9_E ! ! ! ------RA-- +-9 +-6 +------------------7e9c_F ! ! ! ! ------RC-- ! ! +--7 +----------------------7yqk_C ! ! ! ! ----HGRG-- ! ! ! +------------------------8rbx_V ! ! ! ------RARA ! +-8 +6a5l_g -10 ! +--------------1 ------RG-- ! ! +----3 +8upf_G ! ! ! ! ------RT-- ! +-------5 +--------------8u14_G ! ! ------RG-- ! +-------------------8txv_G ! --RG------ +-----------------------------7ccr_H |
> 7ywx_E:STRUCTURE OF THE HUMAN CCAN CENP-A ALPHA-SATELLITE COMPLEX
----RC-- +-----------------------------7ux9_E +-10 ----RT-- ! +-----------------------------6px1_A ! LA--RG-- ! +------7unc_a ! +------4 ----RA-- ! ! ! +--7xsx_a ! ! +---3 ----RA-- ! +-6 +--7e9c_F -11 ! ! ----RG-- ! ! ! +8txv_G ! +-7 +------------2 ----RARA ! ! ! +6a5l_g ! ! ! --HGRG-- ! +-8 +--------------8rbx_V ! ! ! LC------ ! ! ! +---------8bvw_e +-----------9 +------5 ----RG-- ! +---------8upf_G ! ----RT-- ! +8u14_G +----------------1 ----RC-- +7yqk_C |
> 7yz7_A:CRYSTAL STRUCTURE OF THE ZEBRAFISH FOXH1 BOUND TO THE TGTGGATT SITE
------------NAST--RGHT--STLT-------- L +--7cby_C +----------------3 ------------NAST--RTHT--STLT-------- L ! ! +4lg0_A ! +--1 ------------NAST--RGHT--STFT-------- L +-6 +1vtn_C ! ! --TT----KATTQTTG----LTRT----KA--FTYT L ! ! +-------2p7c_B +--7 +-----------4 ----------KT--RG----RGYA----KA------ L ! ! +-------5jvt_A ! ! ----------RTSTHG--------------RA---- L ! ! +3zpl_B +--8 +--------------------2 --------------RC----YG-------------- ! ! +2acj_B ! ! ------------NAST--RTHT--ST---------- L --9 ! +-----------3l2c_A ! +------------5 RT--LAHGTTETYTRG-------------------- L ! +-----------1f4k_B ! ----------KT--RGAT--RGNT------------ L +---------------------------8smh_F |
> 7yzb_A:CRYSTAL STRUCTURE OF THE HUMAN FOXH1 BOUND TO THE TGTGGATT SITE
----------NAST--RGHT--STFT---- L +------------1vtn_C +--------------3 ------------RG----RGYA----KA-- L ! +------------5jvt_A ! ----------NAST--RGHT--STLT---- L ! +-----7cby_C ! +-------------1 ----------NAST--RTHT--STLT---- L +-7 +-4 +-----4lg0_A ! ! ! ! TT----KATTQTTG----LTRT----KAFT L ! ! +-----5 +-------------------2p7c_B ! ! ! ! ----------NAST--RTHT--ST------ L ! ! ! ! +---------3l2c_A +-8 +-6 +----------2 ------------RGNTRGSTAT--RA---- L ! ! ! +---------2o6g_G ! ! ! --------KT--RGAT--RGNT-------- L --9 ! +--------------------------8smh_F ! ! ----------NC----ICNA--RGRG---- L ! +-----------------------------4xrm_B ! --KTHG------------------------ +-----------------------------5hdn_C |
> 7yze_A:CRYSTAL STRUCTURE OF THE HUMAN FOXA2 BOUND TO THE TGTTTACT SITE (FORKHEAD MOTIF GTAAACA)
----------------NASTRGHT--STLT---- L +7cby_C +----1 ----------------NASTRGHT--STFT---- L +-------------3 +1vtn_C ! ! ----------------NASTRTHT--STLT---- L +----5 +-----4lg0_A ! ! ----------RGSTRTSTHG------------RA L ! ! +3zpl_B ! +------------------2 ----------------RC----YG---------- ! +2acj_B --8 ------ST--------NASTRTHT--ST------ L ! +---------3l2c_A ! +----------4 ----------------RGNTRGSTAT--RA---- L ! +--6 +---------2o6g_G ! ! ! --TT--------KATTQTTG--LTRT----KA-- L +-7 +--------------------2p7c_B ! RT--LA--NTHGTTETYTRG-------------- L +-----------------------1f4k_B |
> 7yzg_A:CRYSTAL STRUCTURE OF THE XENOPUS FOXH1 BOUND TO THE TGTGGATT SITE
----------NASTRGHT--STLT-------- L +--7cby_C +------------------2 ----------NASTRTHT--STLT-------- L ! ! +4lg0_A ! +--1 ----------NASTRGHT--STFT-------- L ! +1vtn_C +---7 --TT--KATTQTTG--LTRT----KA--FTYT L ! ! +-----2p7c_B ! ! +------------3 ------------RC--YG-------------- ! +--5 +-----2acj_B --8 ! --------KT--RG--RGYA----KA------ L ! +------------------5jvt_A ! ----------NASTRTHT--ST---------- L ! +----------3l2c_A ! +---------4 ------STRTSTHG------------RA---- L +----6 +----------3zpl_B ! RT--LATTETYTRG------------------ L +--------------------1f4k_B |
> 7zs9_e:YEAST RNA POLYMERASE II TRANSCRIPTION PRE-INITIATION COMPLEX WITH THE +1 NUCLEOSOME (COMPLEX A)
RG------------ +8jh2_e +--------------1 RG--------RT-- +---------9 +6px1_A ! ! ----------RC-- ! +--------------7ux9_E ! ----------RA-- ! +--7xsx_a ! +-------6 ----------RT-- ! ! ! +8u14_G ! ! +--3 ----------RG-- -12 +---7 +8upf_G ! ! ! ----------RG-- ! ! ! +8txv_G ! ! +---------5 ----------RARA ! +-------8 ! +6a5l_g ! ! ! +-4 ------HGRTRG-- ! ! ! +8rbx_V ! ! ! ----------RA-- +-11 ! +7e9c_F ! +--------------2 ----------RG-- ! +7e9c_G ! --RAAANA------ ! +----------------1jfi_B +----10 ----------RC-- +----------------7yqk_C |
> 8aag_A:H1-BOUND PALINDROMIC NUCLEOSOME, STATE 1
RG----RT-- +-----------------------------6px1_A ! RG-------- ! +8jh2_e ! +-----------------2 ------RC-- ! +----5 +7ux9_E --9 ! ! ------RA-- ! +-7 +------------------7e9c_F ! ! ! --HGRTRG-- ! ! +-----------------------8rbx_V ! ! ------RG-- +---8 +8txv_G ! +--------------1 ------RG-- ! ! +8upf_G ! +-------4 ------RT-- ! ! ! +8u14_G +--6 +-------------3 ------RARA ! +6a5l_g ! ------RC-- +----------------------7yqk_C |
> 8atf_Q:NUCLEOSOME-BOUND INO80 ATPASE
--RG------------RT---- +6px1_A +------------------------1 --RT--RG-------------- ! +6pww_K ! --RT----LA------RG---- ! +------7unc_a ! +---------7 ----------------RA---- ! ! +------7e9c_F +-14 +----11 --RG------------RT---- ! ! ! ! +--------------7zs9_e ! ! ! +-8 --RCYA----------RG---- ! ! ! ! +7ccr_A ! ! ! +--------------2 ----------------RC---- ! ! ! +7ux9_E ! +-13 HGRGYG--QC------RG---- ! ! +----------------7y7i_E ! ! ! ----------------RT---- ! ! +--10 +7kbd_C ! ! ! ! +-3 ----------------RA--RA -15 ! ! +----------------4 +6a5l_g ! ! ! ! ----------HG--RTRG---- ! +-12 +8rbx_V ! ! ------------------KG-- ! ! +7nkx_f ! ! +---------------5 ----------------RG---- ! ! ! +8upf_G ! +----9 ------------IT-------- ! ! +-----3wkj_D ! +---------6 ----------------RC---- ! +-----7yqk_C ! ----------KT---------- L +---------------------------7cvo_A |
> 8b4h_A:ISTA TRANSPOSASE CLEAVED DONOR COMPLEX
RA----IAQTNA---- L +----5ego_B +----------------2 --RT--NT--NAIARG L ! +----4cyc_B --4 ----QTVAQTNA---- L ! +-8osb_E ! +--1 ------IAQCNAMG-- L +----------------3 +-1b72_A ! ------IAQCNAYC-- L +----3rkq_B |
> 8bvw_e:RNA POLYMERASE II PRE-INITIATION COMPLEX WITH THE DISTAL +1 NUCLEOSOME (PIC-NUC18W)
RG--------RT-- +---------------------------6px1_A ! RG------------ ! +8jh2_e ! +------------------3 ----------RC-- ! +---9 +7ux9_E -12 ! ! ----------RC-- ! ! +-------------------7yqk_C ! ! ----------RA-- ! ! +--7xsx_a ! ! +------------5 ----------RG-- ! ! ! +--8upf_G +--11 +--7 ----------RA-- ! ! ! +7e9c_F ! ! +---------------1 ----------RG-- ! +-8 +7e9c_G ! ! ! ----------RT-- ! ! ! +8u14_G +--10 +-----------------4 ------HGRTRG-- ! +8rbx_V ! --RAAANA------ ! +---------------1jfi_B +---6 ----------RARA ! +6a5l_g +---------------2 ----------RG-- +8txv_G |
> 8bzm_E:FOXK1-ELF1-HETERODIMER BOUND TO DNA
--------------NAST--RGHT--STFT------RT L +-----------------1vtn_C +--5 --------------NAST--RGHT--STLT-------- L ! ! +-----7cby_C ! +-----------2 ----ST--------NAST--RTHT--STLT-------- L ! +-----4lg0_A +--6 --------RGSTRTSTHG--------------RA---- L ! ! +3zpl_B ! ! +----------------1 ----------------RC----YG-------------- ! +--4 +2acj_B +--7 ! TT--------KATTQTTG----LTRT----KA--FT-- L ! ! +-----------------2p7c_B ! ! ----ST--------NAST--RTHT--ST---------- L +-8 ! +---------3l2c_A ! ! +-------------3 ----------------RGNTRGSTAT--RA-------- L ! ! +---------2o6g_G --9 ! --LA--NTHGTTETYTRG-------------------- L ! +--------------------------1f4k_B ! ------------KT--RGAT--RGNT------------ L +---------------------------8smh_F |
> 8cef_H:ASYMMETRIC DIMERIZATION IN A TRANSCRIPTION FACTOR SUPERFAMILY IS PROMOTED BY ALLOSTERIC INTERACTIONS WITH DNA
--ECKG----RA----PA--RC L +5krb_G +---1 CAECKG--KGRG----RTRT-- L +--------3 +1cit_A ! ! ----KGVT--RG---------- L +--4 +---2c7a_B ! ! --ECKGAG--RG---------- L +-5 +------------4ond_A ! ! --EAKG--RTRT--RT------ ! ! +4umm_E --6 +---------------2 --EAKG--KTRG---------- L ! +4umm_A ! --ECKGAG--KTRG-------- L +----------------4aa6_B |
> 8ceo_r:YEAST RNA POLYMERASE II TRANSCRIPTION PRE-INITIATION COMPLEX WITH CORE MEDIATOR AND THE +1 NUCLEOSOME
--RT--RG---------------- +6pww_K +--------------1 --RG--------------RT---- +-9 +6px1_A ! ! --RG--------------RT---- +-----10 +--------------7zs9_e ! ! --RT------LA------RG---- ! ! +7unc_a ! +--------------4 ------------------RC---- ! +7ux9_E ! --------------------KG-- ! +7nkx_f +-13 +----------------5 ------------------RA--RA ! ! ! ! +6a5l_g ! ! ! +-2 ------------------RG---- ! ! +---11 +8upf_G ! ! ! ! ------------IT---------- ! ! ! ! +------3wkj_D ! +-12 +----------6 ------------------RC---- +-14 ! +------7yqk_C ! ! ! ------------------RT---- ! ! ! +7kbd_C ! ! +----------------------3 --------------HGRTRG---- ! ! +8rbx_V -15 ! --RCYA------------RG---- ! ! +-------7ccr_A ! +---------------7 ------------------RA---- ! +-------7e9c_F ! HGRGYG----QC------RG---- ! +---------7y7i_E +---------------8 --------RG-------------- +---------7ccr_H |
> 8com_A:STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
--------RT-- +---------------------------6px1_A ! --------RC-- ! +---------------------------7ux9_E ! ! --------RA-- -11 ! +--7xsx_a ! ! +----------5 --------RG-- ! ! ! ! +8txv_G ! ! ! +--1 --------RG-- ! ! +---6 +8upf_G +-10 ! ! --------RT-- ! ! ! +8u14_G ! ! +------------4 --------RARA ! +----8 ! +6a5l_g ! ! ! +-3 ----HGRTRG-- ! ! ! +8rbx_V ! ! ! --------RA-- +----9 ! +7e9c_F ! +-----------------2 --------RG-- ! +7e9c_G ! RAAANA------ ! +----------------1jfi_B +-----7 --------RC-- +----------------7yqk_C |
> 8com_B:STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
----RA-- +-----------------------------7e9c_F ! ----RARA ! +6a5l_g ! +--------------1 ----RC-- ! +----2 +7yqk_C --6 ! ! ----RG-- ! +----3 +--------------8upf_G ! ! ! HGRTRG-- ! +-4 +-------------------8rbx_V ! ! ! ----RC-- +---5 +------------------------7ux9_E ! ----RT-- +-------------------------6px1_A |
> 8com_C:STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
----------RG-- +--------------8upf_G +-------7 ----------RG-- ! ! +7e9c_G ! +--------------1 ------HGRTRG-- ! +8rbx_V ! ----------RARA ! +6a5l_g +-10 +-----------2 ----------RG-- ! ! +------6 +8txv_G ! ! ! ! ----------RT-- ! ! +-8 +-----------6px1_A ! ! ! ! ----------RA-- ! ! ! ! +7xsx_a ! +-9 +------------------3 ----------RC-- +----11 ! +7ux9_E ! ! ! ----------RGRG ! ! ! +------8kcb_A ! ! +-------------5 ----------RA-- ! ! +------7e9c_F +-12 ! ----------RT-- ! ! ! +8u14_G ! ! +----------------------4 ----------RC-- -13 ! +7yqk_C ! ! RG------------ ! +-----------------------------7ccr_H ! --RAAANA------ +-----------------------------1jfi_B |
> 8com_H:STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
RG---------- +--------------------------7ccr_H ! --RAAANA---- ! +-----------1jfi_B ! +--7 --------RA-- ! ! +-----------7e9c_F ! +-8 --------RA-- ! ! ! +7xsx_a ! ! +--------------2 --------RC-- +-11 ! +7ux9_E ! ! ! --------RG-- ! ! +-9 +7e9c_G ! ! ! ! +-1 --------RT-- ! ! ! ! +------3 +8u14_G ! ! ! ! ! ! --------RG-- ! ! ! ! ! +8upf_G ! ! ! +---------6 --------RG-- -12 +-------10 ! +8txv_G ! ! +-----5 --------RARA ! ! ! +6a5l_g ! ! +-4 ------HGRG-- ! ! +8rbx_V ! ! --------RT-- ! +-----------------6px1_A ! --------RC-- +----------------------------7yqk_C |
> 8cww_A:STRUCTURE OF S. CEREVISIAE HOP1 CBR BOUND TO A NUCLEOSOME
RG---------- +8jh2_e +--------------1 RG------RT-- +-------5 +6px1_A ! ! --------RC-- +-6 +--------------7ux9_E ! ! --------RA-- +--8 +----------------------7e9c_F ! ! --------RC-- ! +------------------------7yqk_C ! --------RG-- +-9 +8txv_G ! ! +-------2 --------RG-- ! ! ! +8upf_G ! ! +--------------4 --------RARA ! ! ! ! +6a5l_g -10 +----7 +-------3 ----HGRTRG-- ! ! +8rbx_V ! ! --------RT-- ! +----------------------8u14_G ! --RG-------- +-----------------------------7ccr_H |
> 8ejp_B:CRYSTAL STRUCTURE OF THE HOMEODOMAIN OF PLATYPUS SDUX IN COMPLEX WITH DNA CONTAINING 5-BROMOURACIL
--RART----VTKGNA--KA L +2lkx_A +-1 RA--RA----IAQTNA---- L +--------3 +5ego_B ! ! ----RT----NT--NAIARG L +----------6 +-1b72_B ! ! ----RC----IAQCNAYC-- L ! +----------3rkq_B +-------7 ----RT----IAQCNAMG-- L ! ! +----1b72_A ! +----------------5 ----RT--QTVAQTNA---- L ! ! +--8osb_E --8 +-4 ----------NCICNARGRG L ! ! +4xrm_B ! +--2 ------RT--NT--NAIARG L ! +4cyc_B ! ----RT--YTNC--NAKG-- L +-----------------------------8pi8_B |
> 8eml_B:CRYSTAL STRUCTURE OF GSX2 HOMEODOMAIN IN COMPLEX WITH DNA
RT----IAQCNAMG---- L +---1b72_A +---4 RT--QTVAQTNA------ L ! ! +8osb_E ! +---1 RA----IAQTNA------ L +------5 +5ego_B ! ! RT----VTKGNA--KA-- L ! ! +-2lkx_A +----6 +-----3 RT----NT--NAIARG-- L ! ! +-1b72_B ! ! ------NCICNARGRG-- L +-------7 ! +4xrm_B ! ! +-------------2 --RT--NT--NAIARG-- L ! ! +4cyc_B +-8 ! RC----IAQCNAYC---- L ! ! +-------------------3rkq_B --9 ! ------VTCCNAQA--RT L ! +---------------------------8g87_X ! ------------YCFAKC L +---------------------------6pe2_B |
> 8g57_E:STRUCTURE OF NUCLEOSOME-BOUND SIRTUIN 6 DEACETYLASE
RG-------- +8jh2_e +---------------1 RG----RT-- +------5 +6px1_A ! ! ------RC-- +-7 +---------------7ux9_E ! ! ------RA-- +--8 +----------------------7e9c_F ! ! ------RC-- ! +------------------------7yqk_C --9 ------RT-- ! +8u14_G ! +---------------2 ------RG-- ! ! +8upf_G +-----------6 ------RARA ! +6a5l_g ! +--------------3 ------RG-- +-4 +8txv_G ! --HGRTRG-- +--------------8rbx_V |
> 8gxq_D:PIC-MEDIATOR IN COMPLEX WITH +1 NUCLEOSOME (T40N) IN MH-BINDING STATE
----------RG------------ +3x1t_H +----------3 ------------------RC---- ! +7yqk_C +----8 --------------IT-------- ! ! +------3wkj_D ! +---7 ------------------RA--RA ! ! +6a5l_g +------11 +------2 ------------------RG---- ! ! +8upf_G ! ! --------------------KG-- ! ! +7nkx_f ! +---------------1 ------------------RA---- ! +7e9c_F +----13 ------------------RT---- ! ! +7kbd_C ! ! +---------------------4 ----------------HGRG---- ! ! ! +8rbx_V ! ! ! ------------LA----RG---- ! +-12 +7unc_a ! ! +--------------5 ------------------RT---- +-14 ! +-9 +6px1_A ! ! ! ! ! ------------------RT---- ! ! +-----10 +--------------7zs9_e ! ! ! ------------------RG---- ! ! ! +7ccr_A +-15 ! +--------------6 ------------------RC---- ! ! ! +7ux9_E ! ! ! ----------RG------------ -16 ! +-----------------------------7ccr_H ! ! NTATATSTRG-------------- L ! +-----------------------------1dh3_C ! ------------------RG---- +-----------------------------7y7i_E |
> 8gxs_D:PIC-MEDIATOR IN COMPLEX WITH +1 NUCLEOSOME (T40N) IN H-BINDING STATE
----------RG------------ +-----------------------------7ccr_H ! --------------IT-------- ! +------3wkj_D ! +---7 ------------------RA--RA ! ! ! +6a5l_g ! ! +------2 ------------------RG---- ! +----8 +8upf_G +-14 ! ! ----------RG------------ ! ! ! ! +3x1t_H ! ! +------11 +----------3 ------------------RC---- ! ! ! ! +7yqk_C ! ! ! ! --------------------KG-- ! ! ! ! +7nkx_f ! ! ! +---------------1 ------------------RA---- ! ! ! +7e9c_F ! +----13 ------------------RT---- ! ! +7kbd_C ! ! +-------------------4 ----------------HGRG---- +-15 ! ! +8rbx_V ! ! ! ! ------------------RT---- ! ! +--12 +7zs9_e ! ! ! +--------------5 ------------------RT---- ! ! ! +-9 +6px1_A ! ! ! ! ! ------------LA----RG---- ! ! +---10 +--------------7unc_a -16 ! ! ------------------RG---- ! ! ! +7ccr_A ! ! +--------------6 ------------------RC---- ! ! +7ux9_E ! ! NTATATSTRG-------------- L ! +-----------------------------1dh3_C ! ------------------RG---- +-----------------------------7y7i_E |
> 8h0v_h:RNA POLYMERASE II TRANSCRIBING A CHROMATOSOME (TYPE I)
RG------ +-----------------------------7ccr_H +-8 ----RG-- ! +-----------------------------8upf_G ! ----RARA ! +6a5l_g ! +-1 ----RG-- ! +--------------2 +8txv_G ! ! ! ----RC-- --9 +-4 +7yqk_C ! ! ! ----RT-- ! ! ! +8u14_G ! +---5 +-------------3 --HGRG-- ! ! ! +8rbx_V ! +-6 ! ----RA-- ! ! ! +----------------7e9c_F +-------7 ! ----RC-- ! +--------------------7ux9_E ! ----RT-- +---------------------6px1_A |
> 8h7a_A:CRYSTAL STRUCTURE OF THE DIMER FORM KAT6A WH DOMAIN WITH ITS BOUND DOUBLE STRANDED DNA
------NASTRTHT--STLT-------- L +4lg0_A +------------------------1 ------NASTRGHT--STFT-------- L ! +1vtn_C +----4 TTKATTQTTG--LTRT----KA--FTYT L ! ! +-----2p7c_B +-5 +------------------2 --------RC--YG--------KT---- ! ! +-----2acj_B ! ! ------------YG-------------- --6 +-----------------------------3eyi_B ! ------NASTRGHT--STLT-------- L ! +------7cby_C +----------------------3 ------NASTRTHT--ST---------- L +------3l2c_A |
> 8hbm_B:STRUCTURAL BASIS OF THE FARNESOID X RECEPTOR/RETINOID X RECEPTOR HETERODIMER ON INVERTED REPEAT DNA
----KGVT--RG---- L +-----------------------------2c7a_B ! --EAKG--RTRT--RT ! +4umm_E ! +----1 CAECKG--KGRG---- L ! +--------------2 +1cit_A --6 ! ! --ECKGAG--KTRG-- L ! +--3 +----4aa6_B ! ! ! --EAKG--KTRG---- L ! +-4 +-------------------4umm_A ! ! ! --ECKGAG--RG---- L +----5 +----------------------4ond_A ! --ECKG----RA---- L +------------------------5krb_G |
> 8hcl_A:ZEBRAFISH IRF-10 DBD COMPLEX WITH DNA
HTLT----RGNTRGSTAT--RA-- L +-----------------------------2o6g_G +-3 ----QCKTRGAT--RGNT------ L ! +-----------------------------8smh_F +-4 ----DCKTRG----RGYA----KA L ! ! +5jvt_A ! +----------------------------2 ----DCKTRGST--RGYA------ L --5 +4bnc_A ! ----------STRTHT--ST---- L ! +3l2c_A +-----------------------------1 ----------STRTHT--STLT-- L +4lg0_A |
> 8he5_a:RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH RAD26 AND ELF1, STALLED AT SHL(-3.5) OF THE NUCLEOSOME
RG--------RT-- +---------------------------6px1_A ! RG------------ ! +8jh2_e ! +------------------3 ----------RC-- -12 +---9 +7ux9_E ! ! ! ----------RC-- ! ! +-------------------7yqk_C ! ! ----------RA-- ! ! +--7xsx_a +--11 +------------5 ----------RG-- ! ! +--8upf_G ! +---7 ----------RA-- ! ! ! +7e9c_F ! ! +---------------1 ----------RG-- +--10 +7e9c_G ! --RAAANA------ ! +---------------1jfi_B ! ! ----------RG-- +---8 +8txv_G ! +---------4 ----------RARA ! ! ! +6a5l_g +----6 +-2 ------HGRTRG-- ! +8rbx_V ! ----------RT-- +----------8u14_G |
> 8hig_A:CO-CRYSTAL STRUCTURE OF C-TERMINAL DNA BINDING DOMAIN OF SACCHAROPOLYSPORA ERYTHRAEA GLNR IN COMPLEX WITH ITS COGNATE PROMOTER DNA
--RG--DTVT----STRG------WT---- L +------------------------6lxn_A ! ------------------YG---------- --3 +---3eyi_B ! +-------------1 ------------RC--------KT------ +------2 +---2acj_B ! TT--KATT--QTTG----LTRT----FTYT L +-----------------2p7c_B |
> 8ik5_C:TRANSCRIPTION FACTOR LMX1A HOMEOBOX DOMAIN IN COMPLEX WITH WNT1 PROMOTER
--RART------------VTKGNA------KA L +2lkx_A +-1 RA--RA------------IAQTNA-------- L +----------------------3 +5ego_B ! ! ----RT------------NT--NA----IARG L ! +-1b72_B ! ----RT----------QTVAQTNA-------- L +----7 +8osb_E ! ! +-2 ----RT------------IAQCNA----MG-- L ! ! +-------------4 +1b72_A ! ! ! ! ------------------NCICNARGRG---- L ! +-------6 +--4xrm_B --8 ! ----RC------------IAQCNA----YC-- L ! ! +---3rkq_B ! +------------5 ------RT----------NT--NA----IARG L ! +---4cyc_B ! ------AALAITHTKT---------------- +-----------------------------2ofi_A |
> 8ity_O:HUMAN RNA POLYMERASE III PRE-INITIATION COMPLEX CLOSED DNA 1
TTKATTQTTGLTRTKA--FTYT---------------- L +---------------------2p7c_B ! ----------YG-------------------------- +-------3 +---3eyi_B ! ! +------------1 --------RCYG----KT-------------------- ! +----2 +---2acj_B --4 ! ----------------------DCLT--AGTTRGRGRA L ! +----------------5h3r_A ! ------------------------RGSTRTSTHG--RA L +-----------------------------3zpl_B |
> 8j91_C:CRYO-EM STRUCTURE OF NUCLEOSOME CONTAINING ARABIDOPSIS THALIANA HISTONES
------RG---- +-----------------------------8upf_G +-10 ------RC---- ! +-----------------------------7yqk_C ! ------RT---- ! +7kbd_C ! +-1 ------RA--RA +-11 +---------------3 +6a5l_g ! ! ! ! --HGRTRG---- ! ! +----------7 +8rbx_V ! ! ! ! ------RA---- ! ! ! +---------------7e9c_F ! ! ! --------KG-- ! +--9 +--7nkx_f ! ! +-------------5 LA----RG---- ! ! ! ! +7unc_a +-12 ! ! +-4 ------RC---- ! ! ! ! +7ux9_E ! ! +---------8 ------RG---- ! ! ! +7ccr_A ! ! ! +--------------2 ------RT---- +-13 ! +-6 +6px1_A ! ! ! ! ------RT---- ! ! ! +--------------7zs9_e ! ! ! --KT-------- L -14 ! +-----------------------------7cvo_A ! ! IT---------- ! +-----------------------------3wkj_D ! ------RG---- +-----------------------------7y7i_E |
> 8j9v_A:CRYO-EM STRUCTURE OF THE AFRICAN SWINE FEVER VIRUS TOPOISOMERASE 2 COMPLEXED WITH CUT02ADNA AND ETOPOSIDE (EDI-1)
NAST--RGHT--STFT-------------------------------- L +-----------------------------1vtn_C +-1 ------------------DGICLGWGQGKTLTKGFGFG---------- L +-2 +-----------------------------4y0f_A ! ! --------------------------------------NTATATSTRG L --3 +-----------------------------1dh3_C ! --NAST--RGHT--STLT------------------------------ L +-----------------------------7cby_C |
> 8jcc_D:HUMAN HISTONE H2B VARIANT H2BFWT CRYO-EM STRUCTURE WITH 601 DNA SEQUENCE
IT---------- +------3wkj_D +---------------6 ------RC---- ! +------7yqk_C ! ------RT---- ! +7kbd_C +-11 +--------------2 ------RG---- ! ! ! +8upf_G ! ! +-7 ------RA--RA ! ! ! ! +6a5l_g ! ! ! +-------------5 --HGRTRG---- ! +----10 +8rbx_V ! ! --------KG-- ! ! +7nkx_f +---12 +----------------1 ------RA---- ! ! +7e9c_F ! ! ------RT---- ! ! +7zs9_e ! ! +--------------4 ------RT---- ! ! +-8 +6px1_A +-13 ! ! ! ------RG---- ! ! +-------9 +--------------7unc_a ! ! ! ------RG---- ! ! ! +7ccr_A -14 ! +---------------3 ------RC---- ! ! +7ux9_E ! ! --KT-------- L ! +----------------------------7cvo_A ! ------RG---- +----------------------------7y7i_E |
> 8jh2_e:RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH ELF1, SPT4/5 AND FOREIGN DNA, STALLED AT SHL(-1) OF THE NUCLEOSOME
--RT--RG-------------- +6pww_K +------------------------1 --RG------------RT---- ! +6px1_A ! --RG------------RT---- ! +--------------7zs9_e ! +------9 --RT----LA------RG---- ! ! ! +7unc_a ! ! +-------------4 ----------------RC---- ! ! +7ux9_E -14 ! ------------------KG-- ! +-12 +7nkx_f ! ! ! +-------------5 ----------------RG---- ! ! ! ! +8upf_G ! ! ! +-8 ----------------RT---- ! ! ! ! ! +7kbd_C ! ! ! ! +--------------2 ----------------RC---- ! ! +---10 +7yqk_C ! ! ! ------------IT-------- +-13 ! +---------3wkj_D ! +------7 ----------------RA--RA ! ! +6a5l_g ! +---------3 ----------HG--RTRG---- ! +8rbx_V ! --RCYA----------RG---- ! +------7ccr_A ! +-----------6 ----------------RA---- +--11 +------7e9c_F ! HGRGYG--QC------RG---- +------------------7y7i_E |
> 8jhf_A:NATIVE SUV420H1 BOUND TO 167-BP NUCLEOSOME
----RT-- +-----------------------------6px1_A +-6 ----RC-- +-7 +-----------------------------7ux9_E ! ! ----RA-- ! +-----------------------------7e9c_F ! ----RT-- ! +8u14_G --8 +---------2 ----RG-- ! ! +8upf_G ! +--4 ----RARA ! ! ! +6a5l_g ! ! ! +-1 ----RG-- +----------------5 +---------3 +8txv_G ! ! ----RC-- ! +7yqk_C ! HGRTRG-- +------------8rbx_V |
> 8kb5_A:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CONTAINING H3.8
RT----LA------RG---- +7unc_a +--------------1 RG------------RT---- +-8 +6px1_A ! ! RT--RG-------------- +--------9 +--------------6pww_K ! ! RG------------RT---- ! ! +7zs9_e ! +-------------4 --------------RC---- ! +7ux9_E ! RG------------------ ! +-------------------5z3u_A +-16 ! RCYA----------RG---- ! ! +-14 +-----------------7ccr_A ! ! ! ! ! ----------------KG-- ! ! ! +-11 +7nkx_f ! ! ! ! +--------------5 --------------RG---- ! ! ! ! ! +8upf_G ! ! ! +-10 ----------IT-------- ! +-15 ! +------3wkj_D ! ! +--------7 --------------RA--RA ! ! ! +6a5l_g -17 ! +------2 --------------RC---- ! ! +7yqk_C ! ! RGYG--QC------RG---- ! ! +------------------7y7i_E ! +-13 ------LT------------ ! ! +-----7ywx_E ! +------------6 --------------RA---- ! +-----7e9c_F ! --------KT---------- L ! +-----------------7cvo_A +-----12 --------------RT---- ! +7kbd_C +-----------------3 --------HG--RTRG---- +8rbx_V |
> 8kcb_A:COMPLEX OF DDM1-NUCLEOSOME(H2A) COMPLEX WITH DDM1 BOUND TO SHL2
----HGRTRG---- +-----------------------------8rbx_V ! --------RA--RA ! +6a5l_g ! +--------------1 --------RG---- ! +------------6 +8upf_G +-12 ! ! --------RC---- ! ! ! +--------------7yqk_C ! ! ! --------RT---- ! ! ! +-------------------7kbd_C ! ! ! +-8 --------RT---- ! ! ! ! ! +7zs9_e ! +-11 ! +------------------3 --------RC---- ! ! +-9 +7ux9_E ! ! ! ! ----------KG-- ! ! ! ! +--7nkx_f +-13 ! ! +------------------5 LA------RG---- ! ! ! ! ! +7unc_a ! ! +--10 +--2 --------RT---- ! ! ! +6px1_A ! ! ! ----KT-------- L ! ! ! +-7cvo_A -14 ! ! +----------------4 --------RA---- ! ! +----7 +-7e9c_F ! ! ! --IT---------- ! ! +------------------3wkj_D ! ! --------RG---- ! +-----------------------------7ccr_A ! --------RG---- +-----------------------------7y7i_E |
> 8kcb_D:COMPLEX OF DDM1-NUCLEOSOME(H2A) COMPLEX WITH DDM1 BOUND TO SHL2
IT-------- +------3wkj_D +----------5 ----RC---- ! +------7yqk_C +------8 ----RA--RA ! ! +6a5l_g ! +-----------------1 ----RG---- ! +8upf_G ! ----RT---- ! +7kbd_C +-11 +------------------4 ----RG---- ! ! ! +8rbx_V ! ! +-9 ------KG-- ! ! ! ! +7nkx_f ! ! ! ! +----------------2 ----RA---- ! ! ! +-7 +7e9c_F ! ! ! ! ----RC---- +-12 +--10 +----------------7ux9_E ! ! ! ----RG---- ! ! ! +7unc_a ! ! ! +--------------3 ----RT---- ! ! +-----6 +6px1_A +-13 ! ! ----RT---- ! ! ! +--------------7zs9_e ! ! ! ----RG---- -14 ! +---------------------------7ccr_A ! ! ----RG---- ! +-----------------------------7y7i_E ! --KT------ L +-----------------------------7cvo_A |
> 8oja_A:HSV-1 DNA POLYMERASE-PROCESSIVITY FACTOR COMPLEX IN EXONUCLEASE STATE
------IT----------------------------QGQAVT--FT--IGNGSGYGFT--VAKTLTKARG-- L +----------------3iay_A +---1 PIPIVIIIPGFIKGRINTNTFCQGMGDAYTRGWGDG------WG---------------------------- L +--------2 +----------------2xhb_A ! ! --------------------------RT--------RC----------LC--SCYG--FAYA--------RG L --3 +--------------------8g9l_A ! ----------------------------------------------RC------------------------ +-----------------------------8wpe_G |
> 8osb_E:TWIST1-TCF4-ALX4 COMPLEX ON SPECIFIC DNA
RT--QTVAQTNA------ L +8osb_E +--------1 RA----IAQTNA------ L ! +5ego_B +---5 RT----VTKGNA--KA-- L ! ! +2lkx_A ! +-------3 RT----NT--NA------ L +-----6 +1b72_B ! ! ------NCICNARGRG-- L ! ! +4xrm_B +-------7 +------------2 --RT--NT--NAIARG-- L ! ! +4cyc_B ! ! RT----IAQCNAMG---- L --8 ! +----1b72_A ! +-------------4 RC----IAQCNAYC---- L ! +----3rkq_B ! ------VTCCNAQA--RT L +--------------------------8g87_X |
> 8pmf_A:TRANSCRIPTION FACTOR BARHL2 BOUND TO DNA SEQUENCES
----RT----IAQCNA----MG---- L +----1b72_A ! --RART----VTKGNA------KA-- L +------------5 +2lkx_A ! ! +-1 RA--RA----IAQTNA---------- L ! +--3 +5ego_B ! ! ----RT----NT--NA----IARG-- L ! +-1b72_B +---------7 ----RT--QTVAQTNA---------- L ! ! +--8osb_E ! ! +---------4 ----------NCICNARGRG------ L ! ! ! ! +4xrm_B +-8 +----6 +-2 ------RT--NT--NA----IARG-- L ! ! ! +4cyc_B ! ! ! ----RC----IAQCNA----YC---- L --9 ! +------------3rkq_B ! ! ----------VTCCNA----QA--RT L ! +---------------------------8g87_X ! --------------------YCFAKC L +---------------------------6pe2_B |
> 8po8_A:STRUCTURE OF ESCHERICHIA COLI HRPA IN COMPLEX WITH ADP AND OLIGONUCLEOTIDE POLY(DC)11 FORMING AN I-MOTIF
ICKC---------------- L +-----------------------------7aud_E +-2 ----RTQTVAQTNA------ L ! ! +8osb_E +-3 +-----------------------------1 ----RA--IAQTNA------ L ! ! +5ego_B --4 ! ----RTKTIAQCNA----RT L ! +-----------------------------1ig7_A ! ----RT--VTQTNAMTKTRT L +-----------------------------1jgg_B |
> 8pw0_A:MANGANESE-DEPENDENT TRANSCRIPTIONAL REPRESSOR DR2539 COMPLEXED WITH MANGANESE AND BOUND TO DR1709 PROMOTOR
--------RGSTRTSTHG--------RA---- L +---------------3zpl_B +-----2 ------DCLT--AGTTRG--RG----RA---- L ! ! +5h3r_A +-------3 +---------------1 ----------------RCYG----KT------ ! ! +2acj_B +-4 ! --TT------KATTQTTGLTRTKA----FTYT L ! ! +---------------------2p7c_B --5 ! RT--LANTHGTTETYTRG-------------- L ! +-----------------------------1f4k_B ! ------------------YG------------ +-----------------------------3eyi_B |
> 8q72_D:E. COLI PLASMID-BORNE JETABCD(E248A) CORE IN A CLEAVAGE-COMPETENT STATE
TT----KATTQTTG----------LTRT----KAFTYT L +-----------------------------2p7c_B +-2 --KTHG-------------------------------- ! ! +-----------5hdn_C +-3 +-----------------1 ------------DCKT--RGST--RGYA---------- L ! ! +-----------4bnc_A --4 ! ------------------------YG------------ ! +-----------------------------3eyi_B ! ----------------NAST--RGHT--STLT------ L +-----------------------------7cby_C |
> 8r3g_D:CENTRAL GLYCOLYTIC GENES REGULATOR (CGGR) BOUND TO DNA OPERATOR
--DCLT--AGTTRG--RG-------- L +5h3r_A +---------------1 ------------RCYG----KT---- +----2 +2acj_B ! ! ----RGSTRTSTHG------------ L +--3 +---------------3zpl_B ! ! --------------YG---------- --4 +--------------------3eyi_B ! TT----KATTQTTGLTRTKA--FTYT L +-----------------------2p7c_B |
> 8rbx_M:STRUCTURE OF INTEGRATOR-PP2A BOUND TO A PAUSED RNA POLYMERASE II-DSIF- NELF-NUCLEOSOME COMPLEX
LA------RG---- +7unc_a +--------------1 --------RT---- +--7 +6px1_A ! ! --------RT---- +---9 +--------------7zs9_e ! ! --------RG---- ! ! +------7ccr_A ! +----------5 --------RA---- +--11 +------7e9c_F ! ! QC------RG---- ! ! +---------------7y7i_E ! ! ! ----------KG-- ! +-----8 +7nkx_f ! ! +------4 --------RG---- ! ! ! +8upf_G +-12 +-------6 --------RA--RA ! ! ! +6a5l_g ! ! +-------2 --------RC---- ! ! +7yqk_C ! ! --IT---------- +-13 ! +--------------------3wkj_D ! ! +---10 --------RT---- ! ! ! +7kbd_C ! ! +--------------------3 ----HGRTRG---- -14 ! +8rbx_V ! ! --------RC---- ! +---------------------------7ux9_E ! ----KT-------- L +-----------------------------7cvo_A |
> 8rm6_A:CRYSTAL STRUCTURE OF HUMAN ANDROGEN RECEPTOR DNA BINDING DOMAIN BOUND TO ITS RESPONSE ELEMENT: C3(1)ARE
--EAKG--KTRG-- L +-----------------------------4umm_A +-4 ----KGVT--RG-- L ! +-----------------------------2c7a_B ! CAECKG--KGRG-- L --5 +-----1cit_A ! +-----------------2 --ECKGAG--RG-- L ! ! +-----4ond_A +-----3 --ECKGAGKGRG-- L ! +1hcq_E +----------------------1 --ECKGAG--KTRG L +4aa6_B |
> 8siy_G:ORIGIN RECOGNITION COMPLEX ASSOCIATED (ORCA) PROTEIN BOUND TO H4K20ME3-NUCLEOSOME
RG----RT-- +---------------------------6px1_A ! RG-------- ! +8jh2_e ! +------------------4 ------RC-- ! +----9 +7ux9_E -11 ! ! ------RC-- ! ! +-------------------7yqk_C ! ! ------RA-- ! ! +--7xsx_a ! ! +----------6 ------RT-- +-10 ! ! +8u14_G ! ! +--1 ------RG-- ! +---7 +8upf_G ! ! ! ------RG-- ! ! ! +8txv_G ! ! +------------5 ------RARA +------8 ! +6a5l_g ! +-3 --HGRTRG-- ! +8rbx_V ! ------RA-- ! +7e9c_F +-----------------2 ------RG-- +7e9c_G |
> 8sro_B:FOXP3 TETRAMER ON TTTG REPEATS
--------NAST--RGHT--STFT-------- L +--------------------1vtn_C +-6 TT--KATTQTTG----LTRT----KA--FTYT L ! ! +-----2p7c_B ! +--------------3 ----------RC----YG--------KT---- +--7 +-----2acj_B ! ! ------KT--RGST--RGYA------------ L ! ! +4bnc_A ! +---------------------2 ------KT--RG----RGYA----KA------ L ! +5jvt_A +-8 --------NAST--RGHT--STLT-------- L ! ! +------7cby_C ! ! +---------4 --ST----NAST--RTHT--ST---------- L ! ! ! ! +3l2c_A +-9 +--------5 +------1 --ST----NAST--RTHT--STLT-------- L ! ! ! +4lg0_A ! ! ! ------RTSTHG----------------RA-- L -10 ! +----------------3zpl_B ! ! ------KT--RGAT--RGNT------------ L ! +---------------------------8smh_F ! ----TG--RGRG--YC---------------- L +-----------------------------4yo2_A |
> 8svd_T:STRUCTURE OF M. BAIXIANGNINGIAE DARR-DNA COMPLEX REVEALS NOVEL DIMER- OF-DIMERS DNA BINDING
----TTKA--YGYG L +8sva_T +-----------------------1 VT--AGDTTTYTLA L ! +5gpc_B --3 ----TTKA--YGYA L ! +---------------8svd_T +-------2 VTRG----QTHTHT L +---------------5vl9_A |
> 8sxt_A:STRUCTURE OF LINE-1 ORF2P WITH TEMPLATE:PRIMER HYBRID
FGFG------ +------------------8sxt_A ! ------RTPT L --3 +8gh6_A ! +--------------1 --YANA---- L +---2 +8oz7_A ! FCYA------ +--------------6ar1_A |
> 8txv_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE UBIQUITYLATED AT HISTONE H2A K15 IN COMPLEX WITH RNF168 (CLASS 1)
--------RG---- +-----------------------------8upf_G +-12 --------RC---- ! +-----------------------------7yqk_C ! --------RA--RA ! +--------------6a5l_g ! +-------6 KG------RT---- ! ! ! +7kbd_C ! ! +--------------1 ----HGRTRG---- +-13 +--9 +8rbx_V ! ! ! ! ----------KG-- ! ! ! ! +7nkx_f ! ! ! +----------------------2 --------RA---- ! ! ! +7e9c_F ! ! ! ----KT-------- L ! ! ! +-----------------7cvo_A ! +--11 +--7 --------RG---- ! ! ! ! +7ccr_A ! ! ! +-----------------3 --------RC---- -14 ! ! +7ux9_E ! ! +-8 --LA----RG---- ! ! ! ! +7unc_a ! ! ! ! +--------------4 --------RT---- ! +-10 +-----5 +6px1_A ! ! ! --------RT---- ! ! +--------------7zs9_e ! ! --IT---------- ! +----------------------3wkj_D ! --------RG---- +-----------------------------7y7i_E |
> 8u14_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE UBIQUITYLATED AT HISTONE H2A LYSINE 15 IN COMPLEX WITH RNF168-UBCH5C (CLASS 2)
--------RG---- +-----------------------------8upf_G +-12 --------RC---- ! +-----------------------------7yqk_C ! --------RA--RA ! +-------6a5l_g ! +--------4 --------RA---- ! ! +-------7e9c_F +-13 +----------6 KG------RT---- ! ! ! ! +7kbd_C ! ! ! +----------------1 ----HGRTRG---- ! ! ! +8rbx_V ! ! ! ----------KG-- ! ! ! +--7nkx_f ! +-11 +--------------3 --------RC---- ! ! +----7 +--7ux9_E ! ! ! ! ----KT-------- L ! ! +-9 +-----------------7cvo_A -14 ! ! ! --IT---------- ! ! ! +----------------------3wkj_D ! ! ! --LA----RG---- ! +--10 +7unc_a ! ! +--------------2 --------RT---- ! ! +----5 +6px1_A ! ! ! ! --------RG---- ! +---8 +--------------7ccr_A ! ! --------RT---- ! +-------------------7zs9_e ! --------RG---- +-----------------------------7y7i_E |
> 8uvk_B:COSR DNA BOUND FORM II
--RG--DTVTSTRG--------WT---- L +------------------------6lxn_A ! ----------YG---------------- +----3 +---3eyi_B ! ! +-------------1 --------RCYG--------KT------ ! +------2 +---2acj_B +-4 ! TTKATTQTTG----LTRTKA----FTYT L ! ! +-----------------2p7c_B --5 ! --RG--DTVTST--RG------RC---- L ! +-----------------------------4nhj_A ! --------VTKGNAKA------------ L +-----------------------------2lkx_A |
> 8v6v_X:CRYO-EM STRUCTURE OF DOUBLY-BOUND SNF2H-NUCLEOSOME COMPLEX
----------RC-- +-----------------------------6ryu_V ! ------NG--RC-- --3 +--8wha_K ! +---------------------1 EG------SCRG-- L +----2 +--6kw4_Y ! ETNGRG----ICKC L +------------------------7aud_E |
> 8vfz_O:CRYO-EM STRUCTURE OF FOXA1 IN COMPLEX WITH ALBN1 NUCLEOSOME (CLASS 2)
----------------NAST--RGHT--STFT------RTRA L +------------1vtn_C +--------------4 --------------KT--RG----RGYA----KA-------- L ! +------------5jvt_A ! ----------------NAST--RGHT--STLT---------- L ! +-----7cby_C ! +-------------2 ------ST--------NAST--RTHT--STLT---------- L +-9 +---5 +-----4lg0_A ! ! ! ! RT--LA--NTHGTTETYTRG---------------------- L ! ! +-7 +-------------------1f4k_B ! ! ! ! ----------RGSTRTSTHG----------------RA---- L ! ! ! ! +-3zpl_B ! ! ! +---------------------1 ------------------RC----YG--------KT------ ! +--8 +-2acj_B -10 ! ------ST--------NAST--RTHT--ST------------ L ! ! +----------3l2c_A ! ! +---------3 ----------------RGNT--RGSTAT--RA---------- L ! +---6 +----------2o6g_G ! ! --TT--------KATTQTTG----LTRT----KA-------- L ! +--------------------2p7c_B ! --------------KT--RGAT--RGNT-------------- L +----------------------------8smh_F |
> 8wg5_E:CRYO-EM STRUCTURE OF USP16 BOUND TO H2AK119UB NUCLEOSOME
--RT----LA----RG---- +7unc_a +--------------1 --RG----------RT---- +-8 +6px1_A ! ! --RG----------RT---- +--------9 +--------------7zs9_e ! ! --RT--RG------------ ! ! +6pww_K ! +-------------5 --------------RC---- ! +7ux9_E ! --RCYA--------RG---- ! +--------7ccr_A ! +-------7 --------------RC---- -14 ! +--------7yqk_C ! +--10 ----------------KG-- ! ! ! +7nkx_f ! ! +----------------2 --------------RA---- ! +-12 +7e9c_F ! ! ! ----------IT-------- ! ! ! +-----3wkj_D ! ! +--------------6 --------------RG---- +-13 +-----8upf_G ! HGRGYG--QC----RG---- ! +----------------7y7i_E ! ! --------------RT---- +---11 +7kbd_C ! +-3 --------------RA--RA +----------------4 +6a5l_g ! ------------HGRG---- +8rbx_V |
> 8wha_K:STRUCTURE OF DDM1-NUCLEOSOME COMPLEX IN THE ADP-BEFX STATE WITH DDM1 BOUND TO SHL2 AND SHL-2
--NG--RC-- +-8wha_K +-------------1 ------RC-- +---------2 +-6ryu_V ! ! EG--SCRG-- L --3 +---------------6kw4_Y ! ------ICKC L +-------------------------7aud_E |
> 8xas_E:CRYSTAL STRUCTURE OF ATARR1-DBD IN COMPLEX WITH A DNA FRAGMENT
RA------IAQTNA------ L +-5ego_B +--------------2 RT------NT--NAIARG-- L +---------5 +-1b72_B ! ! --RT----NT--NAIARG-- L ! +----------------4cyc_B ! RT----QTVAQTNA------ L ! +8osb_E ! +--1 --------VTKGNA--KA-- L +--8 +--------3 +2lkx_A ! ! ! ! RT------IAQCNAMG---- L ! ! +----4 +--1b72_A ! ! ! ! --------NCRG-------- L ! ! +-------6 +-----------4xrm_B +-9 ! ! ! RC------IAQCNAYC---- L ! ! +-7 +----------------3rkq_B ! ! ! --------VTCCNAQA--RT L -10 ! +------------------------8g87_X ! ! ----NG--NA---------- L ! +-----------------------------2kdz_A ! ----RGDTVTSTRG------ L +-----------------------------6lxn_A |
> 8xgc_4:STRUCTURE OF YEAST REPLISOME ASSOCIATED WITH FACT AND HISTONE HEXAMER, COMPOSITE MAP
RG---------------------- +-----------------------------5bk4_C +-1 ----------RCYG----KT---- +-2 +-----------------------------2acj_B ! ! ------------YG---------- --3 +-----------------------------3eyi_B ! --TTKATTQTTGLTRTKA--FTYT L +-----------------------------2p7c_B |
> 9b8u_A:CRYSTAL STRUCTURE OF CRX-RET4 OLIGONUCLEOTIDE COMPLEX
RT--QTVAQTNA-------- L +8osb_E +-1 RT----VTKGNA----KA-- L +--2 +2lkx_A ! ! RA----IAQTNA-------- L +-------------4 +5ego_B ! ! RT----NT--NA--IARG-- L +-----6 +--1b72_B ! ! ------NCICRGRG------ L ! ! +4xrm_B ! +----------------3 --RT--NT--NA--IARG-- L +---8 +4cyc_B ! ! RT----IAQCNA--MG---- L ! ! +----1b72_A ! ! +-------------5 RC----IAQCNA--YC---- L +--9 +---7 +----3rkq_B ! ! ! --------------YCFAKC L ! ! +------------------6pe2_B -10 ! ------VTCCNA--QA--RT L ! +--------------------------8g87_X ! RT------YTNC----NAKG L +-----------------------------8pi8_B |
> 9c4c_G:THE STRUCTURE OF TWO MNTR DIMERS BOUND TO THE NATIVE MNEP PROMOTER SEQUENCE
--TT------KATTQTTGLTRTKA--FTYT L +-----2p7c_B +-----------------------1 ----------------RCYG----KT---- +-2 +-----2acj_B ! ! ------------------YG---------- --3 +-----------------------------3eyi_B ! RT--LANTHGTTETYTRG------------ L +-----------------------------1f4k_B |
> 9ezz_A:BACTERIAL HISTONE PROTEIN HBB FROM BDELLOVIBRIO BACTERIOVORUS BOUND TO DNA
--------KG-- +7nkx_f +----------------2 ------RA---- +---8 +7e9c_F ! ! ------RC---- ! +----------------7ux9_E ! --KT-------- L ! +-7cvo_A ! +-------------5 ------RA--RA ! ! ! +6a5l_g +-11 ! +-3 ------RC---- ! ! +-7 +7yqk_C ! ! ! ! ------RT---- ! ! ! ! +7kbd_C ! ! +-9 +---------------4 ------RG---- ! ! ! ! +8upf_G ! ! ! ! LA----RG---- +----12 +-10 ! +----------7unc_a ! ! ! +------6 ----HG------ ! ! ! +----------8rbx_V ! ! ! ------RT---- ! ! +------------------7zs9_e +-13 ! ------RG---- ! ! ! +7ccr_A ! ! +----------------------1 ------RT---- -14 ! +6px1_A ! ! QC----RG---- ! +----------------------------7y7i_E ! IT---------- +----------------------------3wkj_D |